OurProteinFactory

Definitions

1. PROVIDER: Organization providing the ORIGINAL MATERIAL. The name and address of this party will be specified in an implementing letter.
2. PROVIDER SCIENTIST: The name and address of this party will be specified in an implementing letter.
3. RECIPIENT: Organization receiving the ORIGINAL MATERIAL. The name and address of this party will be specified in an implementing letter.
4. RECIPIENT SCIENTIST: The name and address of this party will be specified in an implementing letter.
5. ORIGINAL MATERIAL: The description of the material being transferred will be specified in an implementing letter.
6. MATERIAL: ORIGINAL MATERIAL, and PROGENY. The MATERIAL shall not include: (a) MODIFICATIONS, or (b) other substances created by the RECIPIENT through the use of the MATERIAL which are not MODIFICATIONS, PROGENY, or UNMODIFIED DERIVATIVES.
7. PROGENY: Unmodified descendant from the MATERIAL, such as virus from virus, cell from cell, or organism from organism, DNA/RNA duplicated by DNA/RNA supplied by the PROVIDER, purified or fractionated subsets of the ORIGINAL MATERIAL.
8. UNMODIFIED DERIVATIVES: Substances created by the RECIPIENT which constitute an unmodified functional subunit or product expressed by the ORIGINAL MATERIAL. Some examples include: proteins expressed by DNA/RNA supplied by the PROVIDER, or monoclonal antibodies secreted by a hybridoma cell line.
9. MODIFICATIONS: Substances created by the RECIPIENT which contain/incorporate the MATERIAL, and UNMODIFIED DERIVATIVES.
10. COMMERCIAL PURPOSES: The sale, lease, license, or other transfer of the MATERIAL or MODIFICATIONS to a for-profit organization. COMMERCIAL PURPOSES shall also include uses of the MATERIAL or MODIFICATIONS by any organization, including RECIPIENT, to perform contract research, to screen compound libraries, to produce or manufacture products for general sale, or to conduct research activities that result in any sale, lease, license, or transfer of the MATERIAL or MODIFICATIONS to a for-profit organization. However, industrially sponsored academic research shall not be considered a use of the MATERIAL or MODIFICATIONS for COMMERCIAL PURPOSES per se, unless any of the above conditions of this definition are met.
11. NONPROFIT ORGANIZATION(S): A university or other institution of higher education or an organization any nonprofit scientific or educational organization qualified under a nonprofit organization statute. As used herein, the term also includes government agencies.

Terms and Conditions of this Agreement

1. The PROVIDER retains ownership of the MATERIAL, including any MATERIAL contained or incorporated in MODIFICATIONS.

2. The RECIPIENT retains ownership of: (a) MODIFICATIONS (except that, the PROVIDER retains ownership rights to the MATERIAL included therein), and (b) those substances created through the use of the MATERIAL or MODIFICATIONS, but which are not PROGENY, UNMODIFIED DERIVATIVES or MODIFICATIONS (i.e., do not contain the ORIGINAL MATERIAL, PROGENY, UNMODIFIED DERIVATIVES). If either 2 (a) or 2 (b) results from the collaborative efforts of the PROVIDER and the RECIPIENT, joint ownership may be negotiated.

a) is to be used solely for teaching and academic research purposes;
b) will not be used in human subjects, in clinical trials, or for diagnostic purposes involving human subjects without the written consent of the PROVIDER;
c) is to be used only at the RECIPIENT organization and only in the RECIPIENT SCIENTIST's laboratory under the direction of the RECIPIENT SCIENTIST or others working under his/her direct supervision;
d) will not be transferred to anyone else outside the RECIPIENT organization without the prior written consent of the PROVIDER.

4. The RECIPIENT and the RECIPIENT SCIENTIST agree to refer to the PROVIDER any request for the MATERIAL from anyone other than those persons working under the RECIPIENT SCIENTIST's direct supervision. To the extent supplies are available, the PROVIDER or the PROVIDER SCIENTIST agrees to make the MATERIAL available, under a separate implementing letter to this Agreement or other agreement having terms consistent with the terms of this Agreement, to other scientists (at least those at NONPROFIT ORGANIZATION(S)) who wish to replicate the RECIPIENT SCIENTIST's research; provided that such other scientists reimburse the PROVIDER for any costs relating to the preparation and distribution of the MATERIAL.

a) The PROVIDER and/or the PROVIDER SCIENTIST shall have the right, without restriction, to distribute substances created by the PROVIDER through the use of the ORIGINAL MATERIAL only if those substances are not PROGENY, UNMODIFIED DERIVATIVES, or MODIFICATIONS.
b) Under a separate implementing letter to this Agreement (or an agreement at least as protective of the PROVIDER's rights), the RECIPIENT and/or the RECIPIENT SCIENTIST may distribute substances created by the RECIPIENT through the use of the ORIGINAL MATERIAL only if those substances are not PROGENY, UNMODIFIED DERIVATIVES, or MODIFICATIONS.
c) The PROVIDER and/or the PROVIDER SCIENTIST shall have the right, without restriction, to distribute MODIFICATIONS to NONPROFIT ORGANIZATION(S) for research and teaching purposes only.
d) The PROVIDER and/or the PROVIDER SCIENTIST shall have the right, without restriction, to distribute MATERIAL for COMMERCIAL PURPOSES. It is recognized by the PROVIDER that such COMMERCIAL PURPOSES may NOT require a commercial license from the RECIPIENT and the RECIPIENT has no obligation to grant a commercial license to its ownership interest in the MATERIAL. Nothing in this paragraph, however, shall prevent the PROVIDER from granting commercial licenses under the PROVIDER's intellectual property rights claiming such MATERIAL, or methods of their manufacture or their use.
e) The RECIPIENT and/or the RECIPIENT SCIENTIST shall have the right, without restriction, to distribute MODIFICATIONS for COMMERCIAL PURPOSES. It is recognized by the RECIPIENT that such COMMERCIAL PURPOSES may NOT require a commercial license from the PROVIDER and the PROVIDER has no obligation to grant a commercial license to its ownership interest in the MATERIAL incorporated in the MODIFICATIONS. Nothing in this paragraph, however, shall prevent the RECIPIENT from granting commercial licenses under the RECIPIENT's intellectual property rights claiming such MODIFICATIONS, or methods of their manufacture or their use.

6. The RECIPIENT acknowledges that the MATERIAL is or may be the subject of a patent application. Except as provided in this Agreement, no express or implied licenses or other rights are provided to the RECIPIENT under any patents, patent applications, trade secrets or other proprietary rights of the PROVIDER, including any altered forms of the MATERIAL made by the PROVIDER. In particular, no express or implied licenses or other rights are provided to use the MATERIAL, MODIFICATIONS, or any related patents of the PROVIDER for COMMERCIAL PURPOSES.

7. If the RECIPIENT desires to use or license the MATERIAL for COMMERCIAL PURPOSES, the RECIPIENT agrees, in advance of such use, to negotiate in good faith with the PROVIDER to establish the terms of a commercial license. It is understood by the RECIPIENT that the PROVIDER shall have no obligation to grant such a license to the RECIPIENT, and may grant exclusive or non-exclusive commercial licenses to others, or sell or assign all or part of the rights in the MATERIAL to any third party(ies), subject to any pre-existing rights held by others and obligations to the Federal Government.

8. If the PROVIDER desires to use or license the MODIFICATIONS for COMMERCIAL PURPOSES, the PROVIDER agrees, in advance of such use, to negotiate in good faith with the RECIPIENT to establish the terms of a commercial license. It is understood by the PROVIDER that the RECIPIENT shall have no obligation to grant such a license to the PROVIDER, and may grant exclusive or non-exclusive commercial licenses to others, or sell or assign all or part of the rights in the MODIFICATIONS to any third party(ies), subject to any pre-existing rights held by others and obligations to theGovernment.

9. The PROVIDER is free to file patent application(s) claiming inventions made by the PROVIDER through the use of the MODIFICATIONS but agrees to notify the RECIPIENT upon filing a patent application claiming MATERIAL or method(s) of manufacture or use(s) of the MATERIAL.

10. The RECIPIENT is free to file patent application(s) claiming inventions made by the RECIPIENT through the use of the MATERIAL but agrees to notify the PROVIDER upon filing a patent application claiming MODIFICATIONS or method(s) of manufacture or use(s) of the MATERIAL.

11. Any MATERIAL delivered pursuant to this Agreement is understood to be experimental in nature and may have hazardous properties. The PROVIDER MAKES NO REPRESENTATIONS AND EXTENDS NO WARRANTIES OF ANY KIND, EITHER EXPRESSED OR IMPLIED. THERE ARE NO EXPRESS OR IMPLIED WARRANTIES OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE, OR THAT THE USE OF THE MATERIAL WILL NOT INFRINGE ANY PATENT, COPYRIGHT, TRADEMARK, OR OTHER PROPRIETARY RIGHTS.

12. Except to the extent prohibited by law, the RECIPIENT assumes all liability for damages which may arise from its use, storage or disposal of the MATERIAL. The PROVIDER will not be liable to the RECIPIENT for any loss, claim or demand made by the RECIPIENT, or made against the RECIPIENT by any other party, due to or arising from the use of the MATERIAL by the RECIPIENT, except to the extent permitted by law when caused by the gross negligence or willful misconduct of the PROVIDER.

13. This agreement shall not be interpreted to prevent or delay publication of research findings resulting from the use of the MATERIAL or the MODIFICATIONS. The PROVIDER SCIENTIST agrees to provide appropriate acknowledgment of the source of the MODIFICATIONS in all publications. The RECIPIENT SCIENTIST agrees to provide appropriate acknowledgment of the source of the MATERIAL in all publications.

14. The PROVIDER agrees to use the MODIFICATIONS in compliance with all applicable statutes and regulations, including Public Health Service and National Institutes of Health regulations and guidelines such as, for example, those relating to research involving the use of animals or recombinant DNA. The RECIPIENT agrees to use the MATERIAL in compliance with all applicable statutes and regulations, including Public Health Service and National Institutes of Health regulations and guidelines such as, for example, those relating to research involving the use of animals or recombinant DNA.

i) if termination should occur under 15(a), the RECIPIENT shall be bound to the PROVIDER by the least restrictive terms applicable to the MATERIAL obtained from the then-available resources; and
ii) if termination should occur under 15(b) or (d) above, the RECIPIENT will discontinue its use of the MATERIAL and will, upon direction of the PROVIDER, return or destroy any remaining MATERIAL. The RECIPIENT, at its discretion, will also either destroy the MODIFICATIONS or remain bound by the terms of this agreement as they apply to MODIFICATIONS; and
iii) In the event the PROVIDER terminates this Agreement under 15( c) other than for breach of this Agreement or for cause such as an imminent health risk or patent infringement, the PROVIDER will defer the effective date of termination for a period of up to one year, upon request from the RECIPIENT, to permit completion of research in progress. Upon the effective date of termination, or if requested, the deferred effective date of termination, RECIPIENT will discontinue its use of the MATERIAL and will, upon direction of the PROVIDER, return or destroy any remaining MATERIAL. The RECIPIENT, at its discretion, will also either destroy the MODIFICATIONS or remain bound by the terms of this agreement as they apply to MODIFICATIONS.

16.Paragraphs 6, 11 and 12 shall survive termination.

17.The MATERIAL is provided at no cost, or with an optional transmittal fee solely to reimburse the PROVIDER for its preparation and distribution costs. If a fee is requested by the PROVIDER, the amount will be indicated in an implementing letter. Main Text Ends Here.

RECIPIENT: Kangma-Healthcode (Shanghai) Biotech Co. Ltd.
RECIPIENT SCIENTIST: Rongrong Zhan
RECIPIENT ADDRESS: Building 15, Lane 118 Furonghua Road, Shanghai 201321, CHINA
RECIPIENT TEL: 021-58086922
RECIPIENT EMAIL: customer@healthcodon.com

cov pid 1 [ . . . . : . . . 80 1 2019nCoV 100.0% 100.0% --attaaag------gttta--tacct----tcccaggtaacaaaccaaccaactttcgatctcttgtaga--tctg-tt 2 SARS 95.5% 77.9% atatt--ag------gtttt--tacct----acccagg-aa-aagccaaccaacct-cgatctcttgtaga--tctg-tt 3 MERS 74.7% 47.2% g-atttaagtgaatagcttggctatctcacttcc-------------------cct-cgttctcttgcagaactttgatt consensus/100% ..ATT..AG......GsTTs..TAsCT....sCC...................CsT.CGsTCTCTTGsAGA..TsTG.TT consensus/90% ..ATT..AG......GsTTs..TAsCT....sCC...................CsT.CGsTCTCTTGsAGA..TsTG.TT consensus/80% ..ATT..AG......GsTTs..TAsCT....sCC...................CsT.CGsTCTCTTGsAGA..TsTG.TT consensus/70% ..ATT..AG......GsTTs..TAsCT....sCC...................CsT.CGsTCTCTTGsAGA..TsTG.TT cov pid 81 . 1 . . . . : . 160 1 2019nCoV 100.0% 100.0% ctctaaacgaactt---taaaa--tctgt--------gtg--gctgtcactcggctg------------cat------gc 2 SARS 95.5% 77.9% ctctaaacgaactt---taaaa--tctgt--------gta--gctgtcgctcggctg------------cat------gc 3 MERS 74.7% 47.2% tt---aacgaacttaaataaaagccctgttgtttagcgtatcgttg-cacttgtctggtgggattgtggcattaatttgc consensus/100% sT...AACGAACTT...TAAAA..sCTGT........GTu..GsTG.CuCTsGsCTG............CAT......GC consensus/90% sT...AACGAACTT...TAAAA..sCTGT........GTu..GsTG.CuCTsGsCTG............CAT......GC consensus/80% sT...AACGAACTT...TAAAA..sCTGT........GTu..GsTG.CuCTsGsCTG............CAT......GC consensus/70% sT...AACGAACTT...TAAAA..sCTGT........GTu..GsTG.CuCTsGsCTG............CAT......GC cov pid 161 . . . 2 . . . . 240 1 2019nCoV 100.0% 100.0% tt------------agtgcactcacgc---------agtataatt--aataactaa---ttactgtc-----gttgacag 2 SARS 95.5% 77.9% ct------------agtgcacctacgc---------agtataaac--aataa-taaattttactgtc-----gttgacaa 3 MERS 74.7% 47.2% ctgctcatctaggcagtggacatatgctcaacactgggtataattctaat---tgaa---tactatttttcagtt----a consensus/100% sT............AGTGsACssAsGC.........uGTATAAss..AAT...TuA....TACTuTs.....GTT....u consensus/90% sT............AGTGsACssAsGC.........uGTATAAss..AAT...TuA....TACTuTs.....GTT....u consensus/80% sT............AGTGsACssAsGC.........uGTATAAss..AAT...TuA....TACTuTs.....GTT....u consensus/70% sT............AGTGsACssAsGC.........uGTATAAss..AAT...TuA....TACTuTs.....GTT....u cov pid 241 : . . . . 3 . . 320 1 2019nCoV 100.0% 100.0% gacacgagtaactcgtctatctt------ctgcaggc----tgcttacggtttcgtcc---gtgttgcagccgatcatca 2 SARS 95.5% 77.9% gaaacgagtaactcgtccctctt------ctgcagac----tgcttacggtttcgtcc---gtgttgcagtcgatcatca 3 MERS 74.7% 47.2% ga-gcg------tcgtgtctcttgtacgtct-cggtcacaatac--acggtttcgtccggtgcgtggca----at--tcg consensus/100% GA.uCG......TCGTsssTCTT......CT.CuGsC....TuC..ACGGTTTCGTCC...GsGTsGCA....AT..TCu consensus/90% GA.uCG......TCGTsssTCTT......CT.CuGsC....TuC..ACGGTTTCGTCC...GsGTsGCA....AT..TCu consensus/80% GA.uCG......TCGTsssTCTT......CT.CuGsC....TuC..ACGGTTTCGTCC...GsGTsGCA....AT..TCu consensus/70% GA.uCG......TCGTsssTCTT......CT.CuGsC....TuC..ACGGTTTCGTCC...GsGTsGCA....AT..TCu cov pid 321 . . : . . . . 4 400 1 2019nCoV 100.0% 100.0% g--cacatctaggt--ttcgtccg---ggtgtgaccg---aaag--------gtaag-atggag-agc-cttgtccctgg 2 SARS 95.5% 77.9% g--catacctaggt--ttcgtccg---ggtgtgaccg---aaag--------gtaag-atggag-agc-cttgttcttgg 3 MERS 74.7% 47.2% gggcacatc-atgtctttcgt--ggctggtgtgaccgcgcaaggtgcgcgcggtacgtatcgagcagcgc---------- consensus/100% G..CAsAsC.AsGT..TTCGT..G...GGTGTGACCG...AAuG........GTAsG.ATsGAG.AGC.C.......... consensus/90% G..CAsAsC.AsGT..TTCGT..G...GGTGTGACCG...AAuG........GTAsG.ATsGAG.AGC.C.......... consensus/80% G..CAsAsC.AsGT..TTCGT..G...GGTGTGACCG...AAuG........GTAsG.ATsGAG.AGC.C.......... consensus/70% G..CAsAsC.AsGT..TTCGT..G...GGTGTGACCG...AAuG........GTAsG.ATsGAG.AGC.C.......... cov pid 401 . . . . : . . . 480 1 2019nCoV 100.0% 100.0% tttcaac---gagaaaaca-------cacgt----ccaact----cagtttg------------cctg--t------ttt 2 SARS 95.5% 77.9% tgtcaac---gagaaaaca-------cacgt----ccaact----cagtttg------------cctg--t------cct 3 MERS 74.7% 47.2% --tcaactctga-aaaacatcaagaccatgtgtctctaactgtgccactctgtggttcaggaaacctggttgaaaaactt consensus/100% ..TCAAC...GA.AAAACA.......CAsGT....CsAACT....CAsTsTG............CCTG..T......ssT consensus/90% ..TCAAC...GA.AAAACA.......CAsGT....CsAACT....CAsTsTG............CCTG..T......ssT consensus/80% ..TCAAC...GA.AAAACA.......CAsGT....CsAACT....CAsTsTG............CCTG..T......ssT consensus/70% ..TCAAC...GA.AAAACA.......CAsGT....CsAACT....CAsTsTG............CCTG..T......ssT cov pid 481 . 5 . . . . : . 560 1 2019nCoV 100.0% 100.0% aca----ggttc---gc-gacg----tgc--------tcgta-----cgtg--gctt----tggag--ac---------- 2 SARS 95.5% 77.9% tca----ggtta---ga-gacg----tgc--------tagtg-----cgtg--gctt----cgggg--ac---------- 3 MERS 74.7% 47.2% tcaccatggttcatggatggcgaaaatgcctatgaagtggtgaaggccatgttacttaaaaaggagccacttctctatgt consensus/100% sCA....GGTTs...Gs.GuCG....TGC........TsGTu.....CuTG..uCTT....sGGuG..AC.......... consensus/90% sCA....GGTTs...Gs.GuCG....TGC........TsGTu.....CuTG..uCTT....sGGuG..AC.......... consensus/80% sCA....GGTTs...Gs.GuCG....TGC........TsGTu.....CuTG..uCTT....sGGuG..AC.......... consensus/70% sCA....GGTTs...Gs.GuCG....TGC........TsGTu.....CuTG..uCTT....sGGuG..AC.......... cov pid 561 . . . 6 . . . . 640 1 2019nCoV 100.0% 100.0% -----tccg------tgga------gga---------ggtctt-------atc------agaggcac-------gtcaac 2 SARS 95.5% 77.9% -----tctg------tgga------aga---------ggccct-------atc------ggaggcac-------gtgaac 3 MERS 74.7% 47.2% gcccatccggctggctggacacactagacacctcccaggtcctcgtgtgtacctggttgagaggctcattgcttgtgaaa consensus/100% .....TCsG......TGGA......uGA.........GGsCsT.......AsC......uGAGGCsC.......GTsAAs consensus/90% .....TCsG......TGGA......uGA.........GGsCsT.......AsC......uGAGGCsC.......GTsAAs consensus/80% .....TCsG......TGGA......uGA.........GGsCsT.......AsC......uGAGGCsC.......GTsAAs consensus/70% .....TCsG......TGGA......uGA.........GGsCsT.......AsC......uGAGGCsC.......GTsAAs cov pid 641 : . . . . 7 . . 720 1 2019nCoV 100.0% 100.0% atc---------ttaa--agatggcacttgtggc-ttagtagaagttg-aaaaaggcgttttgcct--------caactt 2 SARS 95.5% 77.9% acc---------tcaa--aaatggcacttgtggt-ctagtaga-gctggaaaaaggcgtactgccc--------cagctt 3 MERS 74.7% 47.2% atccattcatggttaaccaattgg--cttatagctctagt----gc----aaatggca----gcctggttggcacaactt consensus/100% AsC.........TsAA..AusTGG..CTTuTuGs.sTAGT....Gs....AAAsGGCu....GCCs........CAuCTT consensus/90% AsC.........TsAA..AusTGG..CTTuTuGs.sTAGT....Gs....AAAsGGCu....GCCs........CAuCTT consensus/80% AsC.........TsAA..AusTGG..CTTuTuGs.sTAGT....Gs....AAAsGGCu....GCCs........CAuCTT consensus/70% AsC.........TsAA..AusTGG..CTTuTuGs.sTAGT....Gs....AAAsGGCu....GCCs........CAuCTT cov pid 721 . . : . . . . 8 800 1 2019nCoV 100.0% 100.0% ----gaacagccctat----gtgttcatcaaacgttcggatgctcgaact---gcacc--tcatggtcat---gttatgg 2 SARS 95.5% 77.9% ----gaacagccctat----gtgttcattaaacgttctgatgc-----cttaagcaccaatcacggccacaaggtc---g 3 MERS 74.7% 47.2% tgcagggcaagcctattggtatgttc--------ttc-------------------cc--ttatg---ac---------a consensus/100% ....GuuCAusCCTAT....uTGTTC........TTC...................CC..TsAsG...As.........u consensus/90% ....GuuCAusCCTAT....uTGTTC........TTC...................CC..TsAsG...As.........u consensus/80% ....GuuCAusCCTAT....uTGTTC........TTC...................CC..TsAsG...As.........u consensus/70% ....GuuCAusCCTAT....uTGTTC........TTC...................CC..TsAsG...As.........u cov pid 801 . . . . : . . . 880 1 2019nCoV 100.0% 100.0% ttgagctggtagcagaactcgaaggc-----attc---------agtacggtcgtagtggtgag-----acacttggtgt 2 SARS 95.5% 77.9% ttgagctggttgcagaaatggacggc-----attc---------agtacggtcgtagcggtata-----acactgggagt 3 MERS 74.7% 47.2% tcgaacttgtcacag-----gaaagcaaaatattctcctgcgcaagtatggccgtggtggt-tatcactacac------- consensus/100% TsGAuCTsGTsuCAG.....GAsuGC.....ATTC.........AGTAsGGsCGTuGsGGT.su.....ACAC....... consensus/90% TsGAuCTsGTsuCAG.....GAsuGC.....ATTC.........AGTAsGGsCGTuGsGGT.su.....ACAC....... consensus/80% TsGAuCTsGTsuCAG.....GAsuGC.....ATTC.........AGTAsGGsCGTuGsGGT.su.....ACAC....... consensus/70% TsGAuCTsGTsuCAG.....GAsuGC.....ATTC.........AGTAsGGsCGTuGsGGT.su.....ACAC....... cov pid 881 . 9 . . . . : . 960 1 2019nCoV 100.0% 100.0% ccttgtccctcatgtgggcga---aataccagtggcttaccgcaaggttctt---cttcgtaagaacggtaataaaggag 2 SARS 95.5% 77.9% actcgtgccacatgtgggcga---aaccccaattgcataccgcaatgttctt---cttcgtaagaacggtaataagggag 3 MERS 74.7% 47.2% -cccattccac-tatgagcgagacaacacc------------------tcttgccct------ga--------------- consensus/100% .CssuTsCCsC.TuTGuGCGA...AAssCC..................TCTT...CT......GA............... consensus/90% .CssuTsCCsC.TuTGuGCGA...AAssCC..................TCTT...CT......GA............... consensus/80% .CssuTsCCsC.TuTGuGCGA...AAssCC..................TCTT...CT......GA............... consensus/70% .CssuTsCCsC.TuTGuGCGA...AAssCC..................TCTT...CT......GA............... cov pid 961 . . . 0 . . . . 1040 1 2019nCoV 100.0% 100.0% ctggtggccatag------ttacggcgccgat-ctaaag----------------tcatt-tgactta------------ 2 SARS 95.5% 77.9% ccggtggtcatag------ctatggcatcgat-ctaaag----------------tc-ttatgactta------------ 3 MERS 74.7% 47.2% ---gtgg--atggacgattttgaggcg--gatcctaaaggcaaatatgcccagaatc----tg-cttaagaagttgattg consensus/100% ...GTGG..ATuG......sTusGGCu..GAT.CTAAAG................TC....TG.CTTA............ consensus/90% ...GTGG..ATuG......sTusGGCu..GAT.CTAAAG................TC....TG.CTTA............ consensus/80% ...GTGG..ATuG......sTusGGCu..GAT.CTAAAG................TC....TG.CTTA............ consensus/70% ...GTGG..ATuG......sTusGGCu..GAT.CTAAAG................TC....TG.CTTA............ cov pid 1041 : . . . . 1 . . 1120 1 2019nCoV 100.0% 100.0% --ggcgacg-------agct--------------tggcactgat------cc--ttatgaag---------attttcaa- 2 SARS 95.5% 77.9% --ggtgacg-------agct--------------tggcactgat------cccatt--gaag---------attatgaa- 3 MERS 74.7% 47.2% gcggtgatgtcactccagttgaccaatacatgtgtggcgttgatggaaaacccatt----agtgcctacgcatttttaat consensus/100% ..GGsGAsG.......AGsT..............TGGCusTGAT......CC..TT....AG.........ATTsTsAA. consensus/90% ..GGsGAsG.......AGsT..............TGGCusTGAT......CC..TT....AG.........ATTsTsAA. consensus/80% ..GGsGAsG.......AGsT..............TGGCusTGAT......CC..TT....AG.........ATTsTsAA. consensus/70% ..GGsGAsG.......AGsT..............TGGCusTGAT......CC..TT....AG.........ATTsTsAA. cov pid 1121 . . : . . . . 2 1200 1 2019nCoV 100.0% 100.0% ---gaaaactggaaca-ctaaacatagcagtggtgttac-ccgtgaactcatgcgtgagcttaacggaggg-gca-taca 2 SARS 95.5% 77.9% ---caaaactggaaca-ctaagcatggcagtggtgc-actccgtgaactcactcgtgagctcaatggaggt-gcagt-ca 3 MERS 74.7% 47.2% ggccaaggatggaataaccaaac-tggc--tgatgt-------tga-----------agc-----ggacgtcgcag--ca consensus/100% ...sAAuusTGGAAsA.CsAAuC.TuGC..TGuTGs.......TGA...........AGC.....GGAsGs.GCA...CA consensus/90% ...sAAuusTGGAAsA.CsAAuC.TuGC..TGuTGs.......TGA...........AGC.....GGAsGs.GCA...CA consensus/80% ...sAAuusTGGAAsA.CsAAuC.TuGC..TGuTGs.......TGA...........AGC.....GGAsGs.GCA...CA consensus/70% ...sAAuusTGGAAsA.CsAAuC.TuGC..TGuTGs.......TGA...........AGC.....GGAsGs.GCA...CA cov pid 1201 . . . . : . . . 1280 1 2019nCoV 100.0% 100.0% ctcgct-atgtcgat------------------aacaactt-------ctg---tggccctgatggctaccctcttgagt 2 SARS 95.5% 77.9% ctcgct-atgtcgac------------------aacaattt-------ctg---tggcccagatgggtaccctcttgatt 3 MERS 74.7% 47.2% cgtgctgatgacgaaggcttcatcacattaaagaacaatctatatagattggtttggc----atg---------ttga-- consensus/100% CssGCT.ATGsCGAs..................AACAAssT.......sTG...TGGC....ATG.........TTGA.. consensus/90% CssGCT.ATGsCGAs..................AACAAssT.......sTG...TGGC....ATG.........TTGA.. consensus/80% CssGCT.ATGsCGAs..................AACAAssT.......sTG...TGGC....ATG.........TTGA.. consensus/70% CssGCT.ATGsCGAs..................AACAAssT.......sTG...TGGC....ATG.........TTGA.. cov pid 1281 . 3 . . . . : . 1360 1 2019nCoV 100.0% 100.0% gcattaaagaccttctagcacgtgctggtaaagcttca---tgcactttgtccgaa-caa-ctggacttt----attga- 2 SARS 95.5% 77.9% gcatcaaagattttctcgcacgcgcgggcaag---tcaatgtgcactctttccgaa-caa-cttgattac----atcga- 3 MERS 74.7% 47.2% gcgt-aaagacgttc---------------------ca----------tatcctaagcaatct--atttttactattaat consensus/100% GCuT.AAAGAssTTC.....................CA..........TsTCCsAA.CAA.CT..AsTss....ATsuA. consensus/90% GCuT.AAAGAssTTC.....................CA..........TsTCCsAA.CAA.CT..AsTss....ATsuA. consensus/80% GCuT.AAAGAssTTC.....................CA..........TsTCCsAA.CAA.CT..AsTss....ATsuA. consensus/70% GCuT.AAAGAssTTC.....................CA..........TsTCCsAA.CAA.CT..AsTss....ATsuA. cov pid 1361 . . . 4 . . . . 1440 1 2019nCoV 100.0% 100.0% --------cactaagagg--ggtgt-----atactgctgccgtgaacat----------ga-gcatgaaatt-----gct 2 SARS 95.5% 77.9% ------gtcg--aagaga--ggtgt-----ctactgctgccgtgaccat----------ga-gcatgaaatt-----gcc 3 MERS 74.7% 47.2% agtgtggtc--caaaaggatggtgttgaaaacactcct-cc-tcactattttactcttggatgca--aaattttaacgct consensus/100% ........C...AAuAGu..GGTGT.....ssACTsCT.CC.TsAssAT..........GA.GCA..AAATT.....GCs consensus/90% ........C...AAuAGu..GGTGT.....ssACTsCT.CC.TsAssAT..........GA.GCA..AAATT.....GCs consensus/80% ........C...AAuAGu..GGTGT.....ssACTsCT.CC.TsAssAT..........GA.GCA..AAATT.....GCs consensus/70% ........C...AAuAGu..GGTGT.....ssACTsCT.CC.TsAssAT..........GA.GCA..AAATT.....GCs cov pid 1441 : . . . . 5 . . 1520 1 2019nCoV 100.0% 100.0% tggtacac--------------ggaacg----ttctgaaaagagctatgaattg---cagacaccttttgaaattaaatt 2 SARS 95.5% 77.9% tggttcac--------------tgagcg----ctctgataagagctacga---gcaccagacacccttcgaaattaa--- 3 MERS 74.7% 47.2% -----caccccacgcaacaagtggagtggcgtttctga------ct------tgt--------ccct------------- consensus/100% .....CAC..............sGAusG....sTCTGA......CT.......G.........CCsT............. consensus/90% .....CAC..............sGAusG....sTCTGA......CT.......G.........CCsT............. consensus/80% .....CAC..............sGAusG....sTCTGA......CT.......G.........CCsT............. consensus/70% .....CAC..............sGAusG....sTCTGA......CT.......G.........CCsT............. cov pid 1521 . . : . . . . 6 1600 1 2019nCoV 100.0% 100.0% g---gcaaagaaa------tttgacaccttcaatgg---ggaat---------gtccaaattttgtattt-cc-cttaaa 2 SARS 95.5% 77.9% gagtgccaagaaa------tttgacactttcaaagg---ggaat---------gcccaaagtttgtgttt-cctctta-a 3 MERS 74.7% 47.2% -----caaacaaaaactccttt-acaccttctatggtaaggagtcacttgagaacccaa--cctacatttacc------a consensus/100% .....CsAAsAAA......TTT.ACACsTTCsAsGG...GGAuT.........usCCAA..ssTusuTTT.CC......A consensus/90% .....CsAAsAAA......TTT.ACACsTTCsAsGG...GGAuT.........usCCAA..ssTusuTTT.CC......A consensus/80% .....CsAAsAAA......TTT.ACACsTTCsAsGG...GGAuT.........usCCAA..ssTusuTTT.CC......A consensus/70% .....CsAAsAAA......TTT.ACACsTTCsAsGG...GGAuT.........usCCAA..ssTusuTTT.CC......A cov pid 1601 . . . . : . . . 1680 1 2019nCoV 100.0% 100.0% ttccataatcaagactattcaaccaagggttga-----aaag-------aaaaagcttgat----ggctt-tatggg--- 2 SARS 95.5% 77.9% ctcaaaagtcaaagtcattcaaccacgtgttga-----aaag-------aaaaagactgag----ggttt-catggggcg 3 MERS 74.7% 47.2% ctccg----------cattca--------ttgagtgtggaagttgtggtaa------tgattcctggcttaca-ggg--- consensus/100% sTCsu..........sATTCA........TTGA.....uAAG.......AA......TGAs....GGsTT.sA.GGG... consensus/90% sTCsu..........sATTCA........TTGA.....uAAG.......AA......TGAs....GGsTT.sA.GGG... consensus/80% sTCsu..........sATTCA........TTGA.....uAAG.......AA......TGAs....GGsTT.sA.GGG... consensus/70% sTCsu..........sATTCA........TTGA.....uAAG.......AA......TGAs....GGsTT.sA.GGG... cov pid 1681 . 7 . . . . : . 1760 1 2019nCoV 100.0% 100.0% --tagaattcgatctgtctatcca---gtt----------------gcgtcaccaaatgaatgcaaccaaatg-tgc-ct 2 SARS 95.5% 77.9% tata-----cgctctgtgtaccct---gtt----------------gcatctccacaggagtgtaac--aata-tgcact 3 MERS 74.7% 47.2% -----aa-------tg-ctatccaagggtttgcctgtggatgtggggcatcat-------atacagct-aatgatg---- consensus/100% ..............TG.sTAsCCs...GTT................GCuTCss.......uTusAuC..AATu.TG.... consensus/90% ..............TG.sTAsCCs...GTT................GCuTCss.......uTusAuC..AATu.TG.... consensus/80% ..............TG.sTAsCCs...GTT................GCuTCss.......uTusAuC..AATu.TG.... consensus/70% ..............TG.sTAsCCs...GTT................GCuTCss.......uTusAuC..AATu.TG.... cov pid 1761 . . . 8 . . . . 1840 1 2019nCoV 100.0% 100.0% t-tcaactctcatgaagtgtgatcattgtggtgaaacttcatggcagacgggcgattttgttaaagcca------cttgc 2 SARS 95.5% 77.9% tgtctaccttgatgaaatgtaatcattgcgatgaagtttcatggcagacgtgcgactttctgaaagcca------cttgt 3 MERS 74.7% 47.2% --tc---------gaagtccaatcatc--------------tggca------tgatt------aagccaaatgctctt-- consensus/100% ..TC.........GAAuTssuATCATs..............TGGCA......sGAsT......AAGCCA......CTT.. consensus/90% ..TC.........GAAuTssuATCATs..............TGGCA......sGAsT......AAGCCA......CTT.. consensus/80% ..TC.........GAAuTssuATCATs..............TGGCA......sGAsT......AAGCCA......CTT.. consensus/70% ..TC.........GAAuTssuATCATs..............TGGCA......sGAsT......AAGCCA......CTT.. cov pid 1841 : . . . . 9 . . 1920 1 2019nCoV 100.0% 100.0% gaattttgtggcactgagaatttg-------actaaagaaggtgcc-actacttgtg------gttacttacc--ccaaa 2 SARS 95.5% 77.9% gaacattgtggcactgaaaattta-------gttattgaagg-acctactacatgtg------ggtacctacctacta-- 3 MERS 74.7% 47.2% ---ctttgtg---ct----acttgcccctttgct----aagg------------gtgatagctgtt-ctt-----cta-- consensus/100% ...ssTTGTG...CT....AsTTu.......usT....AAGG............GTG......GsT.CsT.....CsA.. consensus/90% ...ssTTGTG...CT....AsTTu.......usT....AAGG............GTG......GsT.CsT.....CsA.. consensus/80% ...ssTTGTG...CT....AsTTu.......usT....AAGG............GTG......GsT.CsT.....CsA.. consensus/70% ...ssTTGTG...CT....AsTTu.......usT....AAGG............GTG......GsT.CsT.....CsA.. cov pid 1921 . . : . . . . 0 2000 1 2019nCoV 100.0% 100.0% a-tgctgttgttaaa-at-ttattgtccagcatgtcacaattcagaagtagg------acct----gagc------atag 2 SARS 95.5% 77.9% a-tgctgtagtgaaa-atgcca-tgtcctgcctgtcaagacccagagattgg------acct----gagc------atag 3 MERS 74.7% 47.2% attgc-------aaacat-tca--gt------tg------ctcag---ttggttagttacctttctgaacgctgtaatgt consensus/100% A.TGC.......AAA.AT.ssA..GT......TG......ssCAG...TsGG......ACCT....GAuC......ATus consensus/90% A.TGC.......AAA.AT.ssA..GT......TG......ssCAG...TsGG......ACCT....GAuC......ATus consensus/80% A.TGC.......AAA.AT.ssA..GT......TG......ssCAG...TsGG......ACCT....GAuC......ATus consensus/70% A.TGC.......AAA.AT.ssA..GT......TG......ssCAG...TsGG......ACCT....GAuC......ATus cov pid 2001 . . . . : . . . 2080 1 2019nCoV 100.0% 100.0% tcttgccgaataccataa------------tgaatctggcttgaaaaccattcttcgtaagggtggtcgcacta----tt 2 SARS 95.5% 77.9% tgttgcagattatcacaaccactcaaacattgaa----actcga--------ctccgcaagggaggtaggactagatgt- 3 MERS 74.7% 47.2% tattgctgatt----------------c--taagtc----------------cttcaca------------ct---tat- consensus/100% TsTTGCsGAsT...................TuAu..................CTsCusA............CT.....T. consensus/90% TsTTGCsGAsT...................TuAu..................CTsCusA............CT.....T. consensus/80% TsTTGCsGAsT...................TuAu..................CTsCusA............CT.....T. consensus/70% TsTTGCsGAsT...................TuAu..................CTsCusA............CT.....T. cov pid 2081 . 1 . . . . : . 2160 1 2019nCoV 100.0% 100.0% gcctttggaggctgtgt-gtt--ctcttatgttggttgccat---aacaagtgtgcctattgggttccacgtgc-tagcg 2 SARS 95.5% 77.9% ---tttggaggctgtgt-gtt--tgcctatgttggctgctat---aataagcgtgcctactgggttcctcgtgc-tagtg 3 MERS 74.7% 47.2% --ctttggtggc---gtagcttacgcctactttgg-----atgtgaggaag-gtac-tat---gtactttgtgcctagag consensus/100% ...TTTGGsGGC...GT.GsT..ssCsTAssTTGG.....AT...AusAAG.GTuC.TAs...GTsCsssGTGC.TAGsG consensus/90% ...TTTGGsGGC...GT.GsT..ssCsTAssTTGG.....AT...AusAAG.GTuC.TAs...GTsCsssGTGC.TAGsG consensus/80% ...TTTGGsGGC...GT.GsT..ssCsTAssTTGG.....AT...AusAAG.GTuC.TAs...GTsCsssGTGC.TAGsG consensus/70% ...TTTGGsGGC...GT.GsT..ssCsTAssTTGG.....AT...AusAAG.GTuC.TAs...GTsCsssGTGC.TAGsG cov pid 2161 . . . 2 . . . . 2240 1 2019nCoV 100.0% 100.0% ctaac---------------at------aggttgtaaccat----acaggtgt-tgttggaga--aggttccgaaggtct 2 SARS 95.5% 77.9% ctgat---------------attggctcagg------ccat----actggcat-tactggtgacaatgt---ggagacct 3 MERS 74.7% 47.2% ctaagtctgttgtctcaaggattgg---agact----ccatctttacaggc-tgtactgg------------------ct consensus/100% CTuAs...............AT......AGu......CCAT....ACsGGs.T.TusTGG..................CT consensus/90% CTuAs...............AT......AGu......CCAT....ACsGGs.T.TusTGG..................CT consensus/80% CTuAs...............AT......AGu......CCAT....ACsGGs.T.TusTGG..................CT consensus/70% CTuAs...............AT......AGu......CCAT....ACsGGs.T.TusTGG..................CT cov pid 2241 : . . . . 3 . . 2320 1 2019nCoV 100.0% 100.0% t-aatgacaaccttcttgaaata------ctccaaaaagag----aaa---gtcaacatcaatattgttggt---gact- 2 SARS 95.5% 77.9% tgaatgaggatctccttgagata------ct-------gagtcgtgaacgtgttaacattaacattgttggc---gatt- 3 MERS 74.7% 47.2% --------------cttggaacaaggtcactc-------------aaat-tgctaacat----gttcttggaacagactc consensus/100% ..............CTTGuuAsA......CT..............uAA...GssAACAT....uTTsTTGGs...GAsT. consensus/90% ..............CTTGuuAsA......CT..............uAA...GssAACAT....uTTsTTGGs...GAsT. consensus/80% ..............CTTGuuAsA......CT..............uAA...GssAACAT....uTTsTTGGs...GAsT. consensus/70% ..............CTTGuuAsA......CT..............uAA...GssAACAT....uTTsTTGGs...GAsT. cov pid 2321 . . : . . . . 4 2400 1 2019nCoV 100.0% 100.0% ---------ttaaactt--aat---gaagag---atcgccatt-attttg-----gca--tcttttt----------ct- 2 SARS 95.5% 77.9% ---------ttca--tttgaat---gaagag---gttgccatc-attttg-----gca--tctttct----------ct- 3 MERS 74.7% 47.2% agcattcccttaa-ctt----tgtgggagagttcgttgtcaacgatgttgtcctcgcaattctctctggaaccacaacta consensus/100% .........TTsA..TT....T...GuAGAG...uTsGsCAss.ATsTTG.....GCA..TCTsTsT..........CT. consensus/90% .........TTsA..TT....T...GuAGAG...uTsGsCAss.ATsTTG.....GCA..TCTsTsT..........CT. consensus/80% .........TTsA..TT....T...GuAGAG...uTsGsCAss.ATsTTG.....GCA..TCTsTsT..........CT. consensus/70% .........TTsA..TT....T...GuAGAG...uTsGsCAss.ATsTTG.....GCA..TCTsTsT..........CT. cov pid 2401 . . . . : . . . 2480 1 2019nCoV 100.0% 100.0% -------------------gcttccacaa--gtg----cttttgtggaaactgtgaaaggtt---tggattataaagcat 2 SARS 95.5% 77.9% -------------------gcttctacaa--gtg----cctttattgacactataaagagtc---ttgattacaagtctt 3 MERS 74.7% 47.2% atgttgacaaaatacgccagcttct-caaaggtgtcaccctt----gaca--------agttgcgt-gatta-------t consensus/100% ...................GCTTCs.CAA..GTG....CsTT....GAsA........uGTs...T.GATTA.......T consensus/90% ...................GCTTCs.CAA..GTG....CsTT....GAsA........uGTs...T.GATTA.......T consensus/80% ...................GCTTCs.CAA..GTG....CsTT....GAsA........uGTs...T.GATTA.......T consensus/70% ...................GCTTCs.CAA..GTG....CsTT....GAsA........uGTs...T.GATTA.......T cov pid 2481 . 5 . . . . : . 2560 1 2019nCoV 100.0% 100.0% tcaaa--caaattgttgaatcctgtg--gtaattttaaagttacaaaaggaaaagc---taaaaaaggtgcc-------- 2 SARS 95.5% 77.9% tcaaaacc--attgttgagtcctgcg--gtaactataaagttaccaagggaaa-gcccgt--aaaaggtgct-------- 3 MERS 74.7% 47.2% tta----------gctga---ctatgacgtagc-----agtcac------------------------tgccggcccatt consensus/100% TsA..........GsTGA...CTusG..GTAus.....AGTsAC........................TGCs........ consensus/90% TsA..........GsTGA...CTusG..GTAus.....AGTsAC........................TGCs........ consensus/80% TsA..........GsTGA...CTusG..GTAus.....AGTsAC........................TGCs........ consensus/70% TsA..........GsTGA...CTusG..GTAus.....AGTsAC........................TGCs........ cov pid 2561 . . . 6 . . . . 2640 1 2019nCoV 100.0% 100.0% --tgga-----------atattggtga-acagaaat--caat---------actgagtcctctttatgcatttgcatcag 2 SARS 95.5% 77.9% --tgga-----------acattggaca-acagagat--cagttttaacaccactg---------tgtggttttccctcac 3 MERS 74.7% 47.2% catggataatgctattaatgttggtggtacag-gattacagt---------a-tg---ccgc------------catta- consensus/100% ..TGGA...........AsuTTGGssu.ACAG.uAT..CAuT.........A.TG...................CsTsA. consensus/90% ..TGGA...........AsuTTGGssu.ACAG.uAT..CAuT.........A.TG...................CsTsA. consensus/80% ..TGGA...........AsuTTGGssu.ACAG.uAT..CAuT.........A.TG...................CsTsA. consensus/70% ..TGGA...........AsuTTGGssu.ACAG.uAT..CAuT.........A.TG...................CsTsA. cov pid 2641 : . . . . 7 . . 2720 1 2019nCoV 100.0% 100.0% aggctgc---tcgtgttgtac-gatcaattttctcccgcact--ctt----ga-------aactgctcaaaattctgtgc 2 SARS 95.5% 77.9% aggctgc---tggtgttat-cagatcaatttttgcgcgcaca--ctt----gatgcagcaaaccactca--attcc---- 3 MERS 74.7% 47.2% ---ctgcaccttatgt----------agttct------cactggcttaggtga----g---------------tcc---- consensus/100% ...CTGC...TsuTGT..........AuTTsT......CACs..CTT....GA....................TCs.... consensus/90% ...CTGC...TsuTGT..........AuTTsT......CACs..CTT....GA....................TCs.... consensus/80% ...CTGC...TsuTGT..........AuTTsT......CACs..CTT....GA....................TCs.... consensus/70% ...CTGC...TsuTGT..........AuTTsT......CACs..CTT....GA....................TCs.... cov pid 2721 . . : . . . . 8 2800 1 2019nCoV 100.0% 100.0% gtgttttacagaaggccgctataacaatactagat--ggaatttc---acagt-attcactgagactcatt---gatgct 2 SARS 95.5% 77.9% -tgatttgcaaagagcagctgtcaccatacttgat--ggtatttctgaacagtcatt-ac---gtcttgtc---gacgcc 3 MERS 74.7% 47.2% ----ttta-agaaagttgc---aaccataccgtataagg--ttt----gca-------act----ct-gttaaggatact consensus/100% ....TTTu.AuAuuGssGC...sACsATACsssAT..GG..TTT....uCA.......AC.....CT.uTs...GAsuCs consensus/90% ....TTTu.AuAuuGssGC...sACsATACsssAT..GG..TTT....uCA.......AC.....CT.uTs...GAsuCs consensus/80% ....TTTu.AuAuuGssGC...sACsATACsssAT..GG..TTT....uCA.......AC.....CT.uTs...GAsuCs consensus/70% ....TTTu.AuAuuGssGC...sACsATACsssAT..GG..TTT....uCA.......AC.....CT.uTs...GAsuCs cov pid 2801 . . . . : . . . 2880 1 2019nCoV 100.0% 100.0% atgatgttcac-a--tctgatttggct-actaacaatctagttgta--------------atggcctacattacaggtgg 2 SARS 95.5% 77.9% atg--gtttat-acttcagacctg-ctcaccaacagtgtcattatt--------------atggcatatgtaactggtgg 3 MERS 74.7% 47.2% ctg--gcttatta---------tg-ct--c--acagcgt-gttgtacagagtttttccttatgacatggatt-ctggtg- consensus/100% sTG..GsTsAs.A.........TG.CT..C..ACAussT.uTTuTs..............ATGuCsTusuTs.CsGGTG. consensus/90% sTG..GsTsAs.A.........TG.CT..C..ACAussT.uTTuTs..............ATGuCsTusuTs.CsGGTG. consensus/80% sTG..GsTsAs.A.........TG.CT..C..ACAussT.uTTuTs..............ATGuCsTusuTs.CsGGTG. consensus/70% sTG..GsTsAs.A.........TG.CT..C..ACAussT.uTTuTs..............ATGuCsTusuTs.CsGGTG. cov pid 2881 . 9 . . . . : . 2960 1 2019nCoV 100.0% 100.0% tgttgttca---------------------------gttgacttcgcagtggctaacta-----------------acat 2 SARS 95.5% 77.9% tcttgtaca---------------------------acagacttctcagtggttgtcta-----------------a--t 3 MERS 74.7% 47.2% ---tgt-catcctttagtgaactactttttgattgcgttgatctttcagtagct-tctacctattttttagtccgca--t consensus/100% ...TGT.CA...........................ussGAssTssCAGTuGsT.sCTA.................A..T consensus/90% ...TGT.CA...........................ussGAssTssCAGTuGsT.sCTA.................A..T consensus/80% ...TGT.CA...........................ussGAssTssCAGTuGsT.sCTA.................A..T consensus/70% ...TGT.CA...........................ussGAssTssCAGTuGsT.sCTA.................A..T cov pid 2961 . . . 0 . . . . 3040 1 2019nCoV 100.0% 100.0% ctt------------t--ggc-act---gtttatg---aaaa-----act------caaac--ccgt-------cctt-- 2 SARS 95.5% 77.9% ctt------------ttgggc-actactgt---tg---aaaa-----act------caggc--ctat-------cttt-- 3 MERS 74.7% 47.2% cttgcaagataagact--ggcgact----t-tatgtctacaattattacttcctgccaaactgctgttagtaagcttcta consensus/100% CTT............T..GGC.ACT....T...TG...AsAA.....ACT......CAuuC..CsuT.......CsTs.. consensus/90% CTT............T..GGC.ACT....T...TG...AsAA.....ACT......CAuuC..CsuT.......CsTs.. consensus/80% CTT............T..GGC.ACT....T...TG...AsAA.....ACT......CAuuC..CsuT.......CsTs.. consensus/70% CTT............T..GGC.ACT....T...TG...AsAA.....ACT......CAuuC..CsuT.......CsTs.. cov pid 3041 : . . . . 1 . . 3120 1 2019nCoV 100.0% 100.0% ga---ttggcttgaaga----gaagt-----tta----aggaaggtgtagagtttctt---agagacggttgggaa-att 2 SARS 95.5% 77.9% ga---atggattgaggc----gaaac-----ttagtgcagga----gttgaatttctc---aaggatgcttgggag-att 3 MERS 74.7% 47.2% gatacatgttttgaagctacagaagcaacattta-----------------acttcttgtta--gat--ttggcaggatt consensus/100% GA...sTGssTTGAuGs....GAAus.....TTA.................usTTCTs...A..GAs..TTGGsAu.ATT consensus/90% GA...sTGssTTGAuGs....GAAus.....TTA.................usTTCTs...A..GAs..TTGGsAu.ATT consensus/80% GA...sTGssTTGAuGs....GAAus.....TTA.................usTTCTs...A..GAs..TTGGsAu.ATT consensus/70% GA...sTGssTTGAuGs....GAAus.....TTA.................usTTCTs...A..GAs..TTGGsAu.ATT cov pid 3121 . . : . . . . 2 3200 1 2019nCoV 100.0% 100.0% gtt--aaatttatctc----a--acctgtgcttgtg----------aaa-----ttgtc---ggtggacaaattgtcacc 2 SARS 95.5% 77.9% ctc--aaattt--ctc----attacaggtgtttttg----------aca-----tcgtcaagggt---caaat----ac- 3 MERS 74.7% 47.2% gttcagaatctttctccgcaa-------tgcctatgtgtacacttcacaagggtttgt----ggtggtcaa--------- consensus/100% sTs..uAATsT..CTC....A.......TGssTsTG..........AsA.....TsGT....GGT...CAA......... consensus/90% sTs..uAATsT..CTC....A.......TGssTsTG..........AsA.....TsGT....GGT...CAA......... consensus/80% sTs..uAATsT..CTC....A.......TGssTsTG..........AsA.....TsGT....GGT...CAA......... consensus/70% sTs..uAATsT..CTC....A.......TGssTsTG..........AsA.....TsGT....GGT...CAA......... cov pid 3201 . . . . : . . . 3280 1 2019nCoV 100.0% 100.0% tgtgcaaagg-----------aa-a----ttaagg-------a-gagtg-ttcagacattctttaa-gcttg-taaataa 2 SARS 95.5% 77.9% -------aggttgcttcagataaca----tcaaggattgtgta-aaatgcttca--------ttgatg-ttg-ttaacaa 3 MERS 74.7% 47.2% tg-gca-aagtttct-------acacttgtcaa---------acaagtg-tt-agac------------ttgcttaataa consensus/100% .......AuG............A.A....TsAA.........A.uAuTG.TT.A...............TTG.TsAAsAA consensus/90% .......AuG............A.A....TsAA.........A.uAuTG.TT.A...............TTG.TsAAsAA consensus/80% .......AuG............A.A....TsAA.........A.uAuTG.TT.A...............TTG.TsAAsAA consensus/70% .......AuG............A.A....TsAA.........A.uAuTG.TT.A...............TTG.TsAAsAA cov pid 3281 . 3 . . . . : . 3360 1 2019nCoV 100.0% 100.0% atttttggc-tttg---tgtgc--tgactcta-tcattattggtggagctaaacttaaagccttg---------aattta 2 SARS 95.5% 77.9% ------ggcactcgaaatgtgcattga-tcaagtcactatcgctggcgc-------aaag--ttgcgatcactcaactta 3 MERS 74.7% 47.2% ------gg-----g---tatgca------------acttttgc-------atac--aaag-------gtc--t---cctg consensus/100% ......GG.....G...TuTGC.............AsTsTsGs.............AAAG................ssTu consensus/90% ......GG.....G...TuTGC.............AsTsTsGs.............AAAG................ssTu consensus/80% ......GG.....G...TuTGC.............AsTsTsGs.............AAAG................ssTu consensus/70% ......GG.....G...TuTGC.............AsTsTsGs.............AAAG................ssTu cov pid 3361 . . . 4 . . . . 3440 1 2019nCoV 100.0% 100.0% gg-------tgaaa----catt--tgtcacgcactcaaa----gggattgtacagaaagtgtgttaaat-c----cagag 2 SARS 95.5% 77.9% gg-------tgaagtcttcat----------cgctcaaagcaagggactttaccgtcagtgt-----atacgtggca-ag 3 MERS 74.7% 47.2% ggctggttctaaaa---tcattgctgtta-----tc--------------tacag---------------c--ggca-gg consensus/100% GG.......TuAAu....CAT.............TC..............TACsG...............C....CA.uG consensus/90% GG.......TuAAu....CAT.............TC..............TACsG...............C....CA.uG consensus/80% GG.......TuAAu....CAT.............TC..............TACsG...............C....CA.uG consensus/70% GG.......TuAAu....CAT.............TC..............TACsG...............C....CA.uG cov pid 3441 : . . . . 5 . . 3520 1 2019nCoV 100.0% 100.0% aagaaactggc--cta-----ctcat-----gcct---------------ctaa----aagccc---caa-aaga----- 2 SARS 95.5% 77.9% gagcagctg-caacta-----ctcat-----gcct---------------ctta----aggcac---caa-aaga----- 3 MERS 74.7% 47.2% gagt--ct-----ctaatattcccatcgggaacctattactgtgtcaccactaaggctaagtccgttcaacaagatcttg consensus/100% uAGs..CT.....CTA.....CsCAT.....uCCT...............CTsA....AuGssC...CAA.AAGA..... consensus/90% uAGs..CT.....CTA.....CsCAT.....uCCT...............CTsA....AuGssC...CAA.AAGA..... consensus/80% uAGs..CT.....CTA.....CsCAT.....uCCT...............CTsA....AuGssC...CAA.AAGA..... consensus/70% uAGs..CT.....CTA.....CsCAT.....uCCT...............CTsA....AuGssC...CAA.AAGA..... cov pid 3521 . . : . . . . 6 3600 1 2019nCoV 100.0% 100.0% a-attatctt-cttagagggagaaacacttcccacagaagtgttaaca--------------gaggaagttgt-cttgaa 2 SARS 95.5% 77.9% a-gtaacctttctt-gaaggtga-----tt--caca-------tgacacagtacttacctctgaggaggttgttctcaag 3 MERS 74.7% 47.2% acgttattttgcct----ggtga---gttttcca-agaag------ca--gt-------t---agga--ctg--ctccaa consensus/100% A.uTsAssTT.CsT....GGsGA.....TT..CA.A..........CA...............AGGA..sTG..CTssAu consensus/90% A.uTsAssTT.CsT....GGsGA.....TT..CA.A..........CA...............AGGA..sTG..CTssAu consensus/80% A.uTsAssTT.CsT....GGsGA.....TT..CA.A..........CA...............AGGA..sTG..CTssAu consensus/70% A.uTsAssTT.CsT....GGsGA.....TT..CA.A..........CA...............AGGA..sTG..CTssAu cov pid 3601 . . . . : . . . 3680 1 2019nCoV 100.0% 100.0% -----------------aactg---gtgatttac---aaccattaga-acaacctactag-tgaagctgttga-agctcc 2 SARS 95.5% 77.9% -----------------aac-g---gtga---actcgaagcactcgagacgccc--------------gttgatagcttc 3 MERS 74.7% 47.2% cctactgacaattctacaactgttagtg--ttactgtatccagta---aca------tggttgaaactgttg-------- consensus/100% .................AAC.G...GTG....AC...AssCAsTs...ACu.................GTTG........ consensus/90% .................AAC.G...GTG....AC...AssCAsTs...ACu.................GTTG........ consensus/80% .................AAC.G...GTG....AC...AssCAsTs...ACu.................GTTG........ consensus/70% .................AAC.G...GTG....AC...AssCAsTs...ACu.................GTTG........ cov pid 3681 . 7 . . . . : . 3760 1 2019nCoV 100.0% 100.0% at---tgg--------ttg-gtacaccagtttgtat-----taacg-----------ggcttatgttgctc-------g- 2 SARS 95.5% 77.9% acaaatggagctatcgttg-gcacaccagtctgtgt-----aaatg-----------gcctcatg---ctc----ttag- 3 MERS 74.7% 47.2% -----tgg-gtcaac-ttgagcaaactaatatgcatagtcctgatgttatagtaggtgact-atg----tcattattagt consensus/100% .....TGG........TTG.GsAsACsAuTsTGsuT.....suAsG...........GsCT.ATG....TC.......G. consensus/90% .....TGG........TTG.GsAsACsAuTsTGsuT.....suAsG...........GsCT.ATG....TC.......G. consensus/80% .....TGG........TTG.GsAsACsAuTsTGsuT.....suAsG...........GsCT.ATG....TC.......G. consensus/70% .....TGG........TTG.GsAsACsAuTsTGsuT.....suAsG...........GsCT.ATG....TC.......G. cov pid 3761 . . . 8 . . . . 3840 1 2019nCoV 100.0% 100.0% ---aaatc-------------aaagacacagaaaag------------tactgtgcccttg-cacctaatatgatggt-- 2 SARS 95.5% 77.9% ---agatt-------------aaggacaaagaacaa------------tactgcgc-attgtctcctggtttactggc-- 3 MERS 74.7% 47.2% gaaaaattgtttgtgcgtagtaagga---agaagacggatttgccttctaccctgc--ttg-cac------taatggtca consensus/100% ...AuATs.............AAuGA...AGAAsAs............TACsssGC..TTG.CsC......TusTGGs.. consensus/90% ...AuATs.............AAuGA...AGAAsAs............TACsssGC..TTG.CsC......TusTGGs.. consensus/80% ...AuATs.............AAuGA...AGAAsAs............TACsssGC..TTG.CsC......TusTGGs.. consensus/70% ...AuATs.............AAuGA...AGAAsAs............TACsssGC..TTG.CsC......TusTGGs.. cov pid 3841 : . . . . 9 . . 3920 1 2019nCoV 100.0% 100.0% -----aacaaacaataccttcacactcaaa-ggcggtgcacc-----aac-aaaggt-ta-cttttggtgatgacactgt 2 SARS 95.5% 77.9% -----tacaaacaatgtcttt-cgcttaaaagggggtgcacc-----aattaaaggtgtaacctttggagaagatactgt 3 MERS 74.7% 47.2% tgctgtaccgac--tctctttagacttaag-ggaggtgcacctgtaaaa--aaag---tagcctttggcggtgat-c--- consensus/100% .....sACsuAC..TssCTTs.suCTsAAu.GGsGGTGCACC.....AA..AAAG...TA.CsTTTGGsGusGAs.C... consensus/90% .....sACsuAC..TssCTTs.suCTsAAu.GGsGGTGCACC.....AA..AAAG...TA.CsTTTGGsGusGAs.C... consensus/80% .....sACsuAC..TssCTTs.suCTsAAu.GGsGGTGCACC.....AA..AAAG...TA.CsTTTGGsGusGAs.C... consensus/70% .....sACsuAC..TssCTTs.suCTsAAu.GGsGGTGCACC.....AA..AAAG...TA.CsTTTGGsGusGAs.C... cov pid 3921 . . : . . . . 0 4000 1 2019nCoV 100.0% 100.0% ---gatagaagtgca--aggttac------aag-agtgt-------gaatatcacttt--tgaacttgatgaaaggatt- 2 SARS 95.5% 77.9% ttgg---gaagttca--aggttac------aag-aatgt-------gagaatcacatt--tgagcttgatgaacgtgtt- 3 MERS 74.7% 47.2% --------aagtacatgaggttgctgctgtaagaagtgttactgtcgagtacaacattcatg--ct--------gtatta consensus/100% ........AAGTsCA..AGGTTuC......AAG.AuTGT.......GAusAssACsTT..TG..CT........GsuTT. consensus/90% ........AAGTsCA..AGGTTuC......AAG.AuTGT.......GAusAssACsTT..TG..CT........GsuTT. consensus/80% ........AAGTsCA..AGGTTuC......AAG.AuTGT.......GAusAssACsTT..TG..CT........GsuTT. consensus/70% ........AAGTsCA..AGGTTuC......AAG.AuTGT.......GAusAssACsTT..TG..CT........GsuTT. cov pid 4001 . . . . : . . . 4080 1 2019nCoV 100.0% 100.0% gataaagtactt-----------------aat----------gagaagtgctctgcctatacagttgaactcggtacaga 2 SARS 95.5% 77.9% gacaaagtgctt-----------------aat----------gaaaagtgctctgtctacactgttgaatccggtaccga 3 MERS 74.7% 47.2% gacacactacttgcttcttctagtcttagaacctttgttgtagataagt-ctttgtcaa-----ttgag----------- consensus/100% GAsAsAsTuCTT.................AAs..........GAsAAGT.CTsTGsCsA.....TTGAu........... consensus/90% GAsAsAsTuCTT.................AAs..........GAsAAGT.CTsTGsCsA.....TTGAu........... consensus/80% GAsAsAsTuCTT.................AAs..........GAsAAGT.CTsTGsCsA.....TTGAu........... consensus/70% GAsAsAsTuCTT.................AAs..........GAsAAGT.CTsTGsCsA.....TTGAu........... cov pid 4081 . 1 . . . . : . 4160 1 2019nCoV 100.0% 100.0% agtaaatgagttcgcctgtgttgtggcagatgctgtcataaaaactttgcaaccagtatctgaattactt--------ac 2 SARS 95.5% 77.9% agttactgagtttgcatgtgttgtagcagaggctgttgtgaagactttacaaccagtttctgatctcctt--------ac 3 MERS 74.7% 47.2% -------gagtttgc---tgacgtagtaaagg------------------aacaagtctcagacttgcttgttaaattac consensus/100% .......GAGTTsGC...TGssGTuGsAuAsG..................AACsAGTsTCsGAssTsCTT........AC consensus/90% .......GAGTTsGC...TGssGTuGsAuAsG..................AACsAGTsTCsGAssTsCTT........AC consensus/80% .......GAGTTsGC...TGssGTuGsAuAsG..................AACsAGTsTCsGAssTsCTT........AC consensus/70% .......GAGTTsGC...TGssGTuGsAuAsG..................AACsAGTsTCsGAssTsCTT........AC cov pid 4161 . . . 2 . . . . 4240 1 2019nCoV 100.0% 100.0% accac-tg---ggcat---------------tgatttagatgagtggagtatggcta---------catactacttattt 2 SARS 95.5% 77.9% -caacatg---ggtat---------------tgatcttgatgagtggagtgtagcta---------cattctacttattt 3 MERS 74.7% 47.2% ------tgcgtggaatgccgattccagattttgatttagacgatt---------ttattgacgcaccatgctattgcttt consensus/100% ......TG...GGsAT...............TGATsTsGAsGAsT.........sTA.........CATsCTAsTssTTT consensus/90% ......TG...GGsAT...............TGATsTsGAsGAsT.........sTA.........CATsCTAsTssTTT consensus/80% ......TG...GGsAT...............TGATsTsGAsGAsT.........sTA.........CATsCTAsTssTTT consensus/70% ......TG...GGsAT...............TGATsTsGAsGAsT.........sTA.........CATsCTAsTssTTT cov pid 4241 : . . . . 3 . . 4320 1 2019nCoV 100.0% 100.0% ga---tga-gtctggtga-gtttaaa----ttggcttc----------acatatgtattgttctttct--accc--tcca 2 SARS 95.5% 77.9% ga---tgatg-ctggtgaag---aaaactttt--catc----------acgtatgtattgttcctttt--accc--tcca 3 MERS 74.7% 47.2% aacgctga-g---ggtga------------t--gcatcctggtcttctac-tatg-atc-ttctctcttcaccccgtcga consensus/100% uA...TGA.G...GGTGA............T...CsTC..........AC.TATG.ATs.TTCssTsT..ACCC..TCsA consensus/90% uA...TGA.G...GGTGA............T...CsTC..........AC.TATG.ATs.TTCssTsT..ACCC..TCsA consensus/80% uA...TGA.G...GGTGA............T...CsTC..........AC.TATG.ATs.TTCssTsT..ACCC..TCsA consensus/70% uA...TGA.G...GGTGA............T...CsTC..........AC.TATG.ATs.TTCssTsT..ACCC..TCsA cov pid 4321 . . : . . . . 4 4400 1 2019nCoV 100.0% 100.0% g----atgagga--------------------------tgaagaagaaggtga-t------tgtgaagaagaaga-gtt- 2 SARS 95.5% 77.9% g----atgagga-----------------------------agaagaggacga-tgcagagtgtgaggaagaagaaattg 3 MERS 74.7% 47.2% gtgtgacgaggagtgttctgaagtagaggcttcagattt--agaagaaggtgaat-cagagtgc------------attt consensus/100% G....AsGAGGA.............................AGAAGAuGusGA.T......TGs............uTT. consensus/90% G....AsGAGGA.............................AGAAGAuGusGA.T......TGs............uTT. consensus/80% G....AsGAGGA.............................AGAAGAuGusGA.T......TGs............uTT. consensus/70% G....AsGAGGA.............................AGAAGAuGusGA.T......TGs............uTT. cov pid 4401 . . . . : . . . 4480 1 2019nCoV 100.0% 100.0% -tgagccatcaac---tcaata---tga-gt-----atggtact---gaagatga--------------tt-accaag-g 2 SARS 95.5% 77.9% atga------aacctgtgaaca---tga-gt-----acggtaca---gaggatga--------------tt-atcaag-g 3 MERS 74.7% 47.2% ctgagacttcaac---tgaacaagttgacgtttctcatgagacttctgacgacgagtgggctgctgcagttgatgaagcg consensus/100% .TGA......AAC...TsAAsA...TGA.GT.....AsGusACs...GAsGAsGA..............TT.AssAAG.G consensus/90% .TGA......AAC...TsAAsA...TGA.GT.....AsGusACs...GAsGAsGA..............TT.AssAAG.G consensus/80% .TGA......AAC...TsAAsA...TGA.GT.....AsGusACs...GAsGAsGA..............TT.AssAAG.G consensus/70% .TGA......AAC...TsAAsA...TGA.GT.....AsGusACs...GAsGAsGA..............TT.AssAAG.G cov pid 4481 . 5 . . . . : . 4560 1 2019nCoV 100.0% 100.0% taaac---cttt---------ggaatttggtgccacttctgctg---ctcttcaacctgaagaagagcaa---------- 2 SARS 95.5% 77.9% t---ctccctct---------ggaatttggtgcc---tcagctgaaacagttcgagttgaggaagaagaa---------- 3 MERS 74.7% 47.2% t----tccctctcgatgaagcagaa---gatgtta------ctgaatctgtgcaa---gaagaagcacaaccagtagaag consensus/100% T.......CTsT.........uGAA...GuTGss.......CTG...CssTsCuA...GAuGAAGsusAA.......... consensus/90% T.......CTsT.........uGAA...GuTGss.......CTG...CssTsCuA...GAuGAAGsusAA.......... consensus/80% T.......CTsT.........uGAA...GuTGss.......CTG...CssTsCuA...GAuGAAGsusAA.......... consensus/70% T.......CTsT.........uGAA...GuTGss.......CTG...CssTsCuA...GAuGAAGsusAA.......... cov pid 4561 . . . 6 . . . . 4640 1 2019nCoV 100.0% 100.0% --------gaaga--------agattg-----gtta-----------ga---------------tgatgatagtcaacaa 2 SARS 95.5% 77.9% --------gagga--------agactg-----gctg-----------ga---------------tgat------------ 3 MERS 74.7% 47.2% tacctgttgaagatattgcgcaggttgtcatagctgacaccttacaggaaactcctgttgtgcctgat------------ consensus/100% ........GAuGA........AGusTG.....GsTu...........GA...............TGAT............ consensus/90% ........GAuGA........AGusTG.....GsTu...........GA...............TGAT............ consensus/80% ........GAuGA........AGusTG.....GsTu...........GA...............TGAT............ consensus/70% ........GAuGA........AGusTG.....GsTu...........GA...............TGAT............ cov pid 4641 : . . . . 7 . . 4720 1 2019nCoV 100.0% 100.0% actgttggtcaa---------caagacggcagtgaggacaa--------------tcagacaactactattcaaacaatt 2 SARS 95.5% 77.9% act--------a---------c----------tgag--caa--------------tcagaga------------------ 3 MERS 74.7% 47.2% actgttg---aagtcccaccgcaag-tgg---tga----aacttccgtctgcacctcaga------ctatccagcc---- consensus/100% ACT........A.........C..........TGA....AA..............TCAGA.................... consensus/90% ACT........A.........C..........TGA....AA..............TCAGA.................... consensus/80% ACT........A.........C..........TGA....AA..............TCAGA.................... consensus/70% ACT........A.........C..........TGA....AA..............TCAGA.................... cov pid 4721 . . : . . . . 8 4800 1 2019nCoV 100.0% 100.0% gttgaggttc---aacctcaattagagatggaacttacaccagttgttcagactattga--------------ag----- 2 SARS 95.5% 77.9% -ttgag---ccagaacc------------agaacctacacc---------------tga--------------agaacca 3 MERS 74.7% 47.2% --cgaggt-----aa--------a-----agaagttgcacc---tgt-----cta-tgaggctgataccgaacagacaca consensus/100% ..sGAG.......AA..............uGAAssTuCACC...............TGA..............AG..... consensus/90% ..sGAG.......AA..............uGAAssTuCACC...............TGA..............AG..... consensus/80% ..sGAG.......AA..............uGAAssTuCACC...............TGA..............AG..... consensus/70% ..sGAG.......AA..............uGAAssTuCACC...............TGA..............AG..... cov pid 4801 . . . . : . . . 4880 1 2019nCoV 100.0% 100.0% -tgaat-agttttagtggttatttaaaac-------ttac----------------tgac---------aat-------- 2 SARS 95.5% 77.9% gttaatcag-tttactggttatttaaaac-------ttac----------------tgac---------aat-------- 3 MERS 74.7% 47.2% --gaat--g--ttactg-----ttaaacctaagaggttacgcaaaaagcgtaatgttgaccctttgtccaattttgaaca consensus/100% ..sAAT..G..TTAsTG.....TTAAAsC.......TTAC................TGAC.........AAT........ consensus/90% ..sAAT..G..TTAsTG.....TTAAAsC.......TTAC................TGAC.........AAT........ consensus/80% ..sAAT..G..TTAsTG.....TTAAAsC.......TTAC................TGAC.........AAT........ consensus/70% ..sAAT..G..TTAsTG.....TTAAAsC.......TTAC................TGAC.........AAT........ cov pid 4881 . 9 . . . . : . 4960 1 2019nCoV 100.0% 100.0% ----gtatac-atta-aaaatgc-----------------agac---att---gtggaagaagctaaaaag-gtaaaacc 2 SARS 95.5% 77.9% ----gt-tgccatta-aatgtgt-----------------tgac---atc---gttaaggaggc-acaaagtgctaatcc 3 MERS 74.7% 47.2% taaggt-t---attacagagtgcgttaccatagttttaggtgacgcaattcaagt------agc---caagtg------c consensus/100% ....GT.T...ATTA.AusuTGs.................sGAC...ATs...GT......uGC...sAAG.G......C consensus/90% ....GT.T...ATTA.AusuTGs.................sGAC...ATs...GT......uGC...sAAG.G......C consensus/80% ....GT.T...ATTA.AusuTGs.................sGAC...ATs...GT......uGC...sAAG.G......C consensus/70% ....GT.T...ATTA.AusuTGs.................sGAC...ATs...GT......uGC...sAAG.G......C cov pid 4961 . . . 0 . . . . 5040 1 2019nCoV 100.0% 100.0% aacag------tg-gtt-gttaatgcagccaatgtttaccttaaacatggaggaggtgttgcaggagc-cttaaataagg 2 SARS 95.5% 77.9% tatgg------tg-att-gtaaatgctgctaacatacacctgaaacatggtggtggtgtagcaggtgcactcaa-caagg 3 MERS 74.7% 47.2% tatggggagtctgtgttagttaatgctgctaacacacatcttaagcatggcggtggtatcgctggtgctattaa-tgcgg consensus/100% sAsuG......TG.uTT.GTsAATGCsGCsAAsusssAsCTsAAuCATGGsGGsGGTuTsGCsGGsGC.sTsAA.susGG consensus/90% sAsuG......TG.uTT.GTsAATGCsGCsAAsusssAsCTsAAuCATGGsGGsGGTuTsGCsGGsGC.sTsAA.susGG consensus/80% sAsuG......TG.uTT.GTsAATGCsGCsAAsusssAsCTsAAuCATGGsGGsGGTuTsGCsGGsGC.sTsAA.susGG consensus/70% sAsuG......TG.uTT.GTsAATGCsGCsAAsusssAsCTsAAuCATGGsGGsGGTuTsGCsGGsGC.sTsAA.susGG cov pid 5041 : . . . . 1 . . 5120 1 2019nCoV 100.0% 100.0% ctactaacaatgccatgcaa-------gttgaatctgatgattacat----agctactaatggaccacttaaa-gtgggt 2 SARS 95.5% 77.9% caaccaatggtgccatgcaaaaggagag-------tgatgattacat--taagcta--aatggccctcttaca-gtagga 3 MERS 74.7% 47.2% cttcaaaaggggctgtccaaaaagag-------tcagatgagtatattct-ggcta--aa-gggccg-ttacaagtagga consensus/100% CssCsAAsuusGCsuTsCAA...............sGATGAsTAsAT....uGCTA..AA.GGsCCs.TTAsA.GTuGGs consensus/90% CssCsAAsuusGCsuTsCAA...............sGATGAsTAsAT....uGCTA..AA.GGsCCs.TTAsA.GTuGGs consensus/80% CssCsAAsuusGCsuTsCAA...............sGATGAsTAsAT....uGCTA..AA.GGsCCs.TTAsA.GTuGGs consensus/70% CssCsAAsuusGCsuTsCAA...............sGATGAsTAsAT....uGCTA..AA.GGsCCs.TTAsA.GTuGGs cov pid 5121 . . : . . . . 2 5200 1 2019nCoV 100.0% 100.0% ggt--agttgtgttttaagc-----ggacacaa--------tcttgctaaacactgtc-ttcatgttgtcgg------cc 2 SARS 95.5% 77.9% gg----gtcttgttt---gctttctggacataa--------tcttgctaagaagtgtc-tgcatgttgttggacctaacc 3 MERS 74.7% 47.2% gattcagttctctt----gc-----------aaggccattctctagctaagaa-tatcctgcatgtcgtagg------cc consensus/100% Gu....GTssTsTT....GC...........AA........TCTsGCTAAusA.TuTC.TsCATGTsGTsGG......CC consensus/90% Gu....GTssTsTT....GC...........AA........TCTsGCTAAusA.TuTC.TsCATGTsGTsGG......CC consensus/80% Gu....GTssTsTT....GC...........AA........TCTsGCTAAusA.TuTC.TsCATGTsGTsGG......CC consensus/70% Gu....GTssTsTT....GC...........AA........TCTsGCTAAusA.TuTC.TsCATGTsGTsGG......CC cov pid 5201 . . . . : . . . 5280 1 2019nCoV 100.0% 100.0% caaatgtt-------aacaaaggtgaagacattcaacttct--------taag--agtgct-------tatgaaaatttt 2 SARS 95.5% 77.9% taaatgc-------------aggtgaggacatccagcttct--------taaggca--gca-------tatgaaaatttc 3 MERS 74.7% 47.2% cagatgcccgcgctaaac--agg-------at---gtttctctccttagtaag----tgctataaggctatg-------- consensus/100% sAuATGs.............AGG.......AT...usTTCT........TAAG.....GCs.......TATG........ consensus/90% sAuATGs.............AGG.......AT...usTTCT........TAAG.....GCs.......TATG........ consensus/80% sAuATGs.............AGG.......AT...usTTCT........TAAG.....GCs.......TATG........ consensus/70% sAuATGs.............AGG.......AT...usTTCT........TAAG.....GCs.......TATG........ cov pid 5281 . 3 . . . . : . 5360 1 2019nCoV 100.0% 100.0% aat---cagcacgaagttctacttg----cac----cattattatcagctggtatttttggtgctgaccctatac---at 2 SARS 95.5% 77.9% aattcacag---gacatcttacttg----cac----cattgttgtcagcaggcatatttggtgctaaacc---acttcag 3 MERS 74.7% 47.2% aat-----gc---atatcct-cttgtagtcactcctc-ttgtt-tcagcaggcatatttggtgtaaaacc--------ag consensus/100% AAT.....G....AsuTssT.CTTG....CAC....C.TTuTT.TCAGCsGGsATsTTTGGTGssuAsCC........As consensus/90% AAT.....G....AsuTssT.CTTG....CAC....C.TTuTT.TCAGCsGGsATsTTTGGTGssuAsCC........As consensus/80% AAT.....G....AsuTssT.CTTG....CAC....C.TTuTT.TCAGCsGGsATsTTTGGTGssuAsCC........As consensus/70% AAT.....G....AsuTssT.CTTG....CAC....C.TTuTT.TCAGCsGGsATsTTTGGTGssuAsCC........As cov pid 5361 . . . 4 . . . . 5440 1 2019nCoV 100.0% 100.0% ----------------tctt-----------------taagagtttgtgt--agatactgttcg----ca-----caa-a 2 SARS 95.5% 77.9% ----------------tctt-----------------tacaagtgtgcgtgcag--acggttcg----ta-----cac-a 3 MERS 74.7% 47.2% ctgtgtcttttgattatcttattagggaggctaagacta-gagttt---t--ag-------tcgtcgttaattcccaaga consensus/100% ................TCTT.................TA.uAGTsT...T..AG.......TCG....sA.....CAs.A consensus/90% ................TCTT.................TA.uAGTsT...T..AG.......TCG....sA.....CAs.A consensus/80% ................TCTT.................TA.uAGTsT...T..AG.......TCG....sA.....CAs.A consensus/70% ................TCTT.................TA.uAGTsT...T..AG.......TCG....sA.....CAs.A cov pid 5441 : . . . . 5 . . 5520 1 2019nCoV 100.0% 100.0% tgtctactta--gctgtctt--------tgataaaaatctctatga-caaacttgtt-tcaagcttttt--------gga 2 SARS 95.5% 77.9% ggttta--tattgcagtcaa--------tgacaaagctctttatgagcag----gttgtca-------t--------gga 3 MERS 74.7% 47.2% tgtcta--ta--agagtcttaccatagttgaca-----ttcca----caga---gtt-tga--ctttttcatatgatggg consensus/100% sGTsTA..TA..ussGTCss........TGAsA.....sTssA....CAu....GTT.TsA.......T........GGu consensus/90% sGTsTA..TA..ussGTCss........TGAsA.....sTssA....CAu....GTT.TsA.......T........GGu consensus/80% sGTsTA..TA..ussGTCss........TGAsA.....sTssA....CAu....GTT.TsA.......T........GGu consensus/70% sGTsTA..TA..ussGTCss........TGAsA.....sTssA....CAu....GTT.TsA.......T........GGu cov pid 5521 . . : . . . . 6 5600 1 2019nCoV 100.0% 100.0% ----------aa--tgaag-----agtgaaa-------agcaa---gttgaac----aaa---agatcgctgagattcct 2 SARS 95.5% 77.9% ttatcttgataacctgaagcctagagtggaagcacctaaacaa---gaggagccaccaaacacaga------agattcca 3 MERS 74.7% 47.2% ttac---------------------gtgg------c---gcaatacgtaaagct----aa------------agatt--- consensus/100% .........................GTGu..........uCAA...GssuAuC.....AA............AGATT... consensus/90% .........................GTGu..........uCAA...GssuAuC.....AA............AGATT... consensus/80% .........................GTGu..........uCAA...GssuAuC.....AA............AGATT... consensus/70% .........................GTGu..........uCAA...GssuAuC.....AA............AGATT... cov pid 5601 . . . . : . . . 5680 1 2019nCoV 100.0% 100.0% aaa--gaggaagttaagccatttataactgaaagtaaaccttcagt-tgaacagagaaaacaa-------gatgat-aag 2 SARS 95.5% 77.9% aaactgagga-------------------gaaa--------tctgt-cgtacaga-------agcctgtcgatg-tgaag 3 MERS 74.7% 47.2% --a-tg-----gtt-------tta---ctg---------tttttgtgtgcacaga-----caactctgc------t---- consensus/100% ..A..G.......................G...........TssGT.sGsACAGA.......A............T.... consensus/90% ..A..G.......................G...........TssGT.sGsACAGA.......A............T.... consensus/80% ..A..G.......................G...........TssGT.sGsACAGA.......A............T.... consensus/70% ..A..G.......................G...........TssGT.sGsACAGA.......A............T.... cov pid 5681 . 7 . . . . : . 5760 1 2019nCoV 100.0% 100.0% ---aaaatcaaag--ctt----------gtgttgaagaagttacaacaactctggaagaaactaagttcctcacagaaaa 2 SARS 95.5% 77.9% ccaaaaattaagg--cct----------gcattgatgaggttaccacaacactggaagaaactaagtttcttaccaataa 3 MERS 74.7% 47.2% ---aacactaaagttcttaggaacaagggtgttga-----ttata------ct--aagaa-----gtttcttaca----- consensus/100% ...AAsAssAAuG..CsT..........GsuTTGA.....TTAss......CT..AAGAA.....GTTsCTsACs..... consensus/90% ...AAsAssAAuG..CsT..........GsuTTGA.....TTAss......CT..AAGAA.....GTTsCTsACs..... consensus/80% ...AAsAssAAuG..CsT..........GsuTTGA.....TTAss......CT..AAGAA.....GTTsCTsACs..... consensus/70% ...AAsAssAAuG..CsT..........GsuTTGA.....TTAss......CT..AAGAA.....GTTsCTsACs..... cov pid 5761 . . . 8 . . . . 5840 1 2019nCoV 100.0% 100.0% cttgttact-ttatat--tgacattaatg-gcaatcttcatcca-gattct--------gccactcttgtta---gtgac 2 SARS 95.5% 77.9% ---gttactcttgtttgctgatatcaatg-gtaagcttta-ccatgattctcagaacatgc--------ttagaggtga- 3 MERS 74.7% 47.2% ---gt-------------tgacg---gtgtgcaatatt--------att----------gc--------t---------- consensus/100% ...GT.............TGAsu...uTG.GsAAssTT........ATT..........GC........T.......... consensus/90% ...GT.............TGAsu...uTG.GsAAssTT........ATT..........GC........T.......... consensus/80% ...GT.............TGAsu...uTG.GsAAssTT........ATT..........GC........T.......... consensus/70% ...GT.............TGAsu...uTG.GsAAssTT........ATT..........GC........T.......... cov pid 5841 : . . . . 9 . . 5920 1 2019nCoV 100.0% 100.0% attgacatcactttcttaaagaaagatgctccatatatagtgggtgatgt--tgttcaagag-ggtgttttaactgctgt 2 SARS 95.5% 77.9% a--gatatgtctttccttgagaaggatgcaccttacatggtaggtgatgt--tat-cactagtggtgatatcact--tgt 3 MERS 74.7% 47.2% ----acacgtct---------aagga--cacttta-------gatgatatctta--caacag------------------ consensus/100% ....AsAsssCT.........AAuGA..CsCssTA.......GuTGATuT..Tu..CAssAG.................. consensus/90% ....AsAsssCT.........AAuGA..CsCssTA.......GuTGATuT..Tu..CAssAG.................. consensus/80% ....AsAsssCT.........AAuGA..CsCssTA.......GuTGATuT..Tu..CAssAG.................. consensus/70% ....AsAsssCT.........AAuGA..CsCssTA.......GuTGATuT..Tu..CAssAG.................. cov pid 5921 . . : . . . . 0 6000 1 2019nCoV 100.0% 100.0% g--gttatacctactaaaaaggctggtggcacta---ctgaaatgctagcgaaagctttgagaaaagtgccaacagacaa 2 SARS 95.5% 77.9% gttgtaataccctccaaaaaggctggtggcacta---ctgagatgctctcaagagctttgaagaaagtgccagttgatga 3 MERS 74.7% 47.2% g------------ctaataagtctgttggtattatatct---atgc---------ctttgggatatgtgtc--------- consensus/100% G............CsAAsAAGsCTGsTGGsAsTA...CT...ATGC.........CTTTGuuusAsGTGsC......... consensus/90% G............CsAAsAAGsCTGsTGGsAsTA...CT...ATGC.........CTTTGuuusAsGTGsC......... consensus/80% G............CsAAsAAGsCTGsTGGsAsTA...CT...ATGC.........CTTTGuuusAsGTGsC......... consensus/70% G............CsAAsAAGsCTGsTGGsAsTA...CT...ATGC.........CTTTGuuusAsGTGsC......... cov pid 6001 . . . . : . . . 6080 1 2019nCoV 100.0% 100.0% ttatataaccacttacccgggtcagggtttaaa-----tggtta--cactgtaga------ggaggcaaaga----cagt 2 SARS 95.5% 77.9% gtatataaccacgtaccctggacaagg-----atgtgctggttatacact-t-ga------ggaagctaaga----c--t 3 MERS 74.7% 47.2% ---------------------tca--------------tggtt--------tagacttaatgcaagcagggagtgtc-gt consensus/100% .....................sCA..............TGGTT........T.GA......GsAuGCsuuGA....C..T consensus/90% .....................sCA..............TGGTT........T.GA......GsAuGCsuuGA....C..T consensus/80% .....................sCA..............TGGTT........T.GA......GsAuGCsuuGA....C..T consensus/70% .....................sCA..............TGGTT........T.GA......GsAuGCsuuGA....C..T cov pid 6081 . 1 . . . . : . 6160 1 2019nCoV 100.0% 100.0% gct--taaaaagtgta-----aaagtgccttttacat---tctaccatctattatct----------ctaatgagaagca 2 SARS 95.5% 77.9% gctcttaagaaatgca-----aa-------tctgcat---ttta---tgtactaccttcagaagcacctaatgctaagga 3 MERS 74.7% 47.2% gc-----------gtagagttaacgtgcc--ctacgtgtgtct-----------cct-----ag---ctaataaagagca consensus/100% GC...........GsA.....AA........sTuCuT...TsT...........sCT..........CTAATussuAGsA consensus/90% GC...........GsA.....AA........sTuCuT...TsT...........sCT..........CTAATussuAGsA consensus/80% GC...........GsA.....AA........sTuCuT...TsT...........sCT..........CTAATussuAGsA consensus/70% GC...........GsA.....AA........sTuCuT...TsT...........sCT..........CTAATussuAGsA cov pid 6161 . . . 2 . . . . 6240 1 2019nCoV 100.0% 100.0% agaaattcttggaactgtttcttggaatttgcgagaaatgcttgcacatg-cagaagaaacacgcaaattaatgcctgtc 2 SARS 95.5% 77.9% agagattctaggaactgtatcctggaatttgagagaaatgcttgctcatg-ctgaagagacaagaaaattaatgcctata 3 MERS 74.7% 47.2% aga---------agctat---------tttg----------------atgtctgaag----acg----ttaa-------- consensus/100% AGA.........AuCTuT.........TTTG................ATG.CsGAAG....AsG....TTAA........ consensus/90% AGA.........AuCTuT.........TTTG................ATG.CsGAAG....AsG....TTAA........ consensus/80% AGA.........AuCTuT.........TTTG................ATG.CsGAAG....AsG....TTAA........ consensus/70% AGA.........AuCTuT.........TTTG................ATG.CsGAAG....AsG....TTAA........ cov pid 6241 : . . . . 3 . . 6320 1 2019nCoV 100.0% 100.0% tgtgtggaaactaaagccatagtttcaactatacagcgtaaa----tataagg-------gtattaa----------aat 2 SARS 95.5% 77.9% tgcatggatgttagagccataatggcaaccatccaacgtaag----tataaag-------gaattaa----------aat 3 MERS 74.7% 47.2% ---------gtta-------------aacccttcag---aagattttataaagcacgtccgcactaatggtggttacaat consensus/100% .........usTA.............AACssTsCAu...AAu....TATAAuG.......GsAsTAA..........AAT consensus/90% .........usTA.............AACssTsCAu...AAu....TATAAuG.......GsAsTAA..........AAT consensus/80% .........usTA.............AACssTsCAu...AAu....TATAAuG.......GsAsTAA..........AAT consensus/70% .........usTA.............AACssTsCAu...AAu....TATAAuG.......GsAsTAA..........AAT cov pid 6321 . . : . . . . 4 6400 1 2019nCoV 100.0% 100.0% ac---------aa--gagggtgtggttgattat-ggtgctagattttacttttacaccagtaaaa--caactgtagcgtc 2 SARS 95.5% 77.9% tc---------aa--gagggcatcgttgactat-ggtgtccgattcttcttttatactagtaaagagc--ctgtagcttc 3 MERS 74.7% 47.2% tcttggcatttagtcgagggtg-----aactattggtgc-----------------------aag--------------- consensus/100% sC.........Au..GAGGGsu.....uAsTAT.GGTGs.......................AAu............... consensus/90% sC.........Au..GAGGGsu.....uAsTAT.GGTGs.......................AAu............... consensus/80% sC.........Au..GAGGGsu.....uAsTAT.GGTGs.......................AAu............... consensus/70% sC.........Au..GAGGGsu.....uAsTAT.GGTGs.......................AAu............... cov pid 6401 . . . . : . . . 6480 1 2019nCoV 100.0% 100.0% acttatcaacacacttaacga----------tctaaatgaaactcttgttacaatgccacttggctatgtaacacatggc 2 SARS 95.5% 77.9% ---tatta------tta-cgaagctgaactctctaaatgagccgcttgtcacaatgccaattggttatgtgacacatggt 3 MERS 74.7% 47.2% ------------actta-cg--------ct---taaataag-ctcctg---------ca-ttggtc---tga-------- consensus/100% ..............TTA.CG.............TAAATuAu.CsCsTG.........CA.TTGGss...TuA........ consensus/90% ..............TTA.CG.............TAAATuAu.CsCsTG.........CA.TTGGss...TuA........ consensus/80% ..............TTA.CG.............TAAATuAu.CsCsTG.........CA.TTGGss...TuA........ consensus/70% ..............TTA.CG.............TAAATuAu.CsCsTG.........CA.TTGGss...TuA........ cov pid 6481 . 5 . . . . : . 6560 1 2019nCoV 100.0% 100.0% ttaaatttggaagaagctgctcggtatatgagatctct-caaagtgccagctacagtttctgtttcttcacctgatgctg 2 SARS 95.5% 77.9% tttaatcttgaagaggctgcgcgctgtatgcgttctct-taaagctcctgccgtagtgtcagtatcatcaccagatgctg 3 MERS 74.7% 47.2% tcaaacc------------------atatg------ctacaagg--------atagtgt--gtttt--------atgttg consensus/100% TssAAss..................uTATG......CT.sAAuG........usAGTsT..GTsTs........ATGsTG consensus/90% TssAAss..................uTATG......CT.sAAuG........usAGTsT..GTsTs........ATGsTG consensus/80% TssAAss..................uTATG......CT.sAAuG........usAGTsT..GTsTs........ATGsTG consensus/70% TssAAss..................uTATG......CT.sAAuG........usAGTsT..GTsTs........ATGsTG cov pid 6561 . . . 6 . . . . 6640 1 2019nCoV 100.0% 100.0% ttacagcgtataatggttat--cttacttcttcttctaaaacacctgaagaacattttattgaaaccatctcactt--gc 2 SARS 95.5% 77.9% ttactacatataatggatac--ctcacttcgtcatcaaagacatctgaggagcactttgtagaaacagtttc--tttggc 3 MERS 74.7% 47.2% taa------agaatag-tacagctt--ttc----------------------cattt----gaaacactttca-----gc consensus/100% TsA......AsAATuG.TAs..CTs..TTC......................CAsTT....GAAACssTsTC......GC consensus/90% TsA......AsAATuG.TAs..CTs..TTC......................CAsTT....GAAACssTsTC......GC consensus/80% TsA......AsAATuG.TAs..CTs..TTC......................CAsTT....GAAACssTsTC......GC consensus/70% TsA......AsAATuG.TAs..CTs..TTC......................CAsTT....GAAACssTsTC......GC cov pid 6641 : . . . . 7 . . 6720 1 2019nCoV 100.0% 100.0% -tg--gttcctataaagattggtcctattctggacaatctacacaactaggtatagaatttcttaagagaggtgataaaa 2 SARS 95.5% 77.9% -tg--gctcttacagagattggtcctattcaggacagcgtacagagttaggtgttgaatttcttaagcgtggtgacaaaa 3 MERS 74.7% 47.2% atgtcgtgcgtat-----ttgg----attc----------ac-------------------------------------- consensus/100% .TG..GssCsTAs.....TTGG....ATTC..........AC...................................... consensus/90% .TG..GssCsTAs.....TTGG....ATTC..........AC...................................... consensus/80% .TG..GssCsTAs.....TTGG....ATTC..........AC...................................... consensus/70% .TG..GssCsTAs.....TTGG....ATTC..........AC...................................... cov pid 6721 . . : . . . . 8 6800 1 2019nCoV 100.0% 100.0% gtgtatattacact----agtaatcctaccacattccacctagatggtgaagttat--cacctttgacaatcttaaga-- 2 SARS 95.5% 77.9% ttgtgtaccacactctggag-agccccgtcgagtttcatcttgacggtgaggttctttcac--ttgacaaactaaagagt 3 MERS 74.7% 47.2% ----gcacgacac-----agcag----------------------------------------ttaacaatc-gaag--- consensus/100% ....usAssACAC.....AG.Au........................................TTuACAAsC.sAAG... consensus/90% ....usAssACAC.....AG.Au........................................TTuACAAsC.sAAG... consensus/80% ....usAssACAC.....AG.Au........................................TTuACAAsC.sAAG... consensus/70% ....usAssACAC.....AG.Au........................................TTuACAAsC.sAAG... cov pid 6801 . . . . : . . . 6880 1 2019nCoV 100.0% 100.0% cacttctt-tctttgagagaagtgaggactattaa-ggtgt-----ttacaacagt------agacaacattaacctcca 2 SARS 95.5% 77.9% c---tcttatccctgcgggaggttaagactataaa-agtgt-----tcacaactgt------ggacaacactaatctcca 3 MERS 74.7% 47.2% ----tctt------------agt---gactgtcgatggtgtaaattttagaacagtcgttctaaataa---taa------ consensus/100% ....TCTT............uGT...GACTuTsuA.uGTGT.....TsAsAACsGT......uuAsAA...TAA...... consensus/90% ....TCTT............uGT...GACTuTsuA.uGTGT.....TsAsAACsGT......uuAsAA...TAA...... consensus/80% ....TCTT............uGT...GACTuTsuA.uGTGT.....TsAsAACsGT......uuAsAA...TAA...... consensus/70% ....TCTT............uGT...GACTuTsuA.uGTGT.....TsAsAACsGT......uuAsAA...TAA...... cov pid 6881 . 9 . . . . : . 6960 1 2019nCoV 100.0% 100.0% cacgcaagttgtggacatgtcaatgaca--tatggacaacagtttgg--------tccaacttatttggatggagctgat 2 SARS 95.5% 77.9% cacacagcttgtggatatgtctatgaca--tatggacagcagtttgg--------tccaacatacttggatggtgctgat 3 MERS 74.7% 47.2% -------------ga----------acacttatagatcacagcttggatgcgttttc--------tttaatggtgctgat consensus/100% .............GA..........ACA..TATuGAssuCAGsTTGG........TC........TTsuATGGsGCTGAT consensus/90% .............GA..........ACA..TATuGAssuCAGsTTGG........TC........TTsuATGGsGCTGAT consensus/80% .............GA..........ACA..TATuGAssuCAGsTTGG........TC........TTsuATGGsGCTGAT consensus/70% .............GA..........ACA..TATuGAssuCAGsTTGG........TC........TTsuATGGsGCTGAT cov pid 6961 . . . 0 . . . . 7040 1 2019nCoV 100.0% 100.0% gtt----actaaaataaaacctcat---aattcac--atgaaggtaaa----------acattttatgttttacctaa-- 2 SARS 95.5% 77.9% gtt----acaaaaattaaacctcatgtaaat---c--atgagggtaag----------actttctttgtactacctag-- 3 MERS 74.7% 47.2% atttctgac---------acc--------attc-ctgatgag---aaacagaatggtcacagttta-----tatctagca consensus/100% uTT....AC.........ACC........AT...C..ATGAu...AAu..........ACssTsTs.....TAsCTAu.. consensus/90% uTT....AC.........ACC........AT...C..ATGAu...AAu..........ACssTsTs.....TAsCTAu.. consensus/80% uTT....AC.........ACC........AT...C..ATGAu...AAu..........ACssTsTs.....TAsCTAu.. consensus/70% uTT....AC.........ACC........AT...C..ATGAu...AAu..........ACssTsTs.....TAsCTAu.. cov pid 7041 : . . . . 1 . . 7120 1 2019nCoV 100.0% 100.0% --------------tgatgacactctacgtgttgaggctttt---gagtacta-------ccacacaactgatcct---- 2 SARS 95.5% 77.9% --------------tgatgacacactacgtagtgaagctttc---gagtacta-------ccatac------tcttgatg 3 MERS 74.7% 47.2% gacaatttgactgctgatgaaaca---------aaggcgcttaaagagt--tatatggccccgt-----tgatcct-ac- consensus/100% ..............TGATGAsACs.........uAuGCssTs...GAGT..TA.......CCus........TCsT.... consensus/90% ..............TGATGAsACs.........uAuGCssTs...GAGT..TA.......CCus........TCsT.... consensus/80% ..............TGATGAsACs.........uAuGCssTs...GAGT..TA.......CCus........TCsT.... consensus/70% ..............TGATGAsACs.........uAuGCssTs...GAGT..TA.......CCus........TCsT.... cov pid 7121 . . : . . . . 2 7200 1 2019nCoV 100.0% 100.0% --agttttctgggtaggtaca-------tgtcagcattaaa--------tcacactaaaaagtggaaatacccacaagtt 2 SARS 95.5% 77.9% agagttttcttggtaggtaca-------tgtctgctttaaa--------ccacacaaagaaatggaaatttcctcaagtt 3 MERS 74.7% 47.2% -----tttct-------tacacagattctattcac-ttaaggctgcagtccat------gggtggaa------------- consensus/100% .....TTTCT.......TACA.......TuTssuC.TTAAu........sCAs......uuuTGGAA............. consensus/90% .....TTTCT.......TACA.......TuTssuC.TTAAu........sCAs......uuuTGGAA............. consensus/80% .....TTTCT.......TACA.......TuTssuC.TTAAu........sCAs......uuuTGGAA............. consensus/70% .....TTTCT.......TACA.......TuTssuC.TTAAu........sCAs......uuuTGGAA............. cov pid 7201 . . . . : . . . 7280 1 2019nCoV 100.0% 100.0% aatggtt--------taa----c-ttctattaaat-gggcagataacaactgttatcttg-ccactgca-ttgtta--ac 2 SARS 95.5% 77.9% ggtggtt--------taa----c-ttcaattaaat-gggctgataacaattgttat-ttgtctagtgtt-ttatta--gc 3 MERS 74.7% 47.2% gatggttgtgtgtgataaggtacgttctctcaaattgag-tgataataattgttatctt----aatgcagttattatgac consensus/100% uuTGGTT........TAA....C.TTCssTsAAAT.GuG.sGATAAsAAsTGTTAT.TT....AsTGss.TTuTTA..uC consensus/90% uuTGGTT........TAA....C.TTCssTsAAAT.GuG.sGATAAsAAsTGTTAT.TT....AsTGss.TTuTTA..uC consensus/80% uuTGGTT........TAA....C.TTCssTsAAAT.GuG.sGATAAsAAsTGTTAT.TT....AsTGss.TTuTTA..uC consensus/70% uuTGGTT........TAA....C.TTCssTsAAAT.GuG.sGATAAsAAsTGTTAT.TT....AsTGss.TTuTTA..uC cov pid 7281 . 3 . . . . : . 7360 1 2019nCoV 100.0% 100.0% actcca---acaaatagag-ttgaag----t-----ttaatccacctgctctacaagatgc--ttat------tacagag 2 SARS 95.5% 77.9% acttca---ac------agcttgaag----tcaaattcaatgcaccagcacttcaagaggc--ttat------tatagag 3 MERS 74.7% 47.2% acttgattta----------ttgaaggacattaaatttgttatacctgctctacagcatgcatttatgaaacata-aggg consensus/100% ACTssA...A..........TTGAAG....T.....TsusTssACCsGCsCTsCAusAsGC..TTAT......TA.AGuG consensus/90% ACTssA...A..........TTGAAG....T.....TsusTssACCsGCsCTsCAusAsGC..TTAT......TA.AGuG consensus/80% ACTssA...A..........TTGAAG....T.....TsusTssACCsGCsCTsCAusAsGC..TTAT......TA.AGuG consensus/70% ACTssA...A..........TTGAAG....T.....TsusTssACCsGCsCTsCAusAsGC..TTAT......TA.AGuG cov pid 7361 . . . 4 . . . . 7440 1 2019nCoV 100.0% 100.0% caagggctggtgaagctgctaactt-----------ttgtgcacttat-cttagcctactgtaataagacagtaggtgag 2 SARS 95.5% 77.9% cccgtgctggtgatgctgctaactt-----------ttgtgcactcatactc-gcttacagtaataaaactgttggcgag 3 MERS 74.7% 47.2% c-------ggtgattcaactgacttcatagccctcattatg------------gcttatggcaattgcacatttggt--g consensus/100% C.......GGTGAssCsuCTuACTT...........TTuTG............GCsTAssGsAATsusACssTsGGs..G consensus/90% C.......GGTGAssCsuCTuACTT...........TTuTG............GCsTAssGsAATsusACssTsGGs..G consensus/80% C.......GGTGAssCsuCTuACTT...........TTuTG............GCsTAssGsAATsusACssTsGGs..G consensus/70% C.......GGTGAssCsuCTuACTT...........TTuTG............GCsTAssGsAATsusACssTsGGs..G cov pid 7441 : . . . . 5 . . 7520 1 2019nCoV 100.0% 100.0% tt--aggtgatg-------------tta-------------------gagaaacaatgagttacttgttt----ca-aca 2 SARS 95.5% 77.9% ct--tggtgatg-------------tca-------------------gagaaactatg----acccatcttctaca-gca 3 MERS 74.7% 47.2% ctccagatgatgcctctcggttacttcataccgtgcttgcaaaggctgag---ttatg------ctgtt--ctgcacgca consensus/100% sT..sGuTGATG.............TsA...................GAG...ssATG......ssuTs.....CA.uCA consensus/90% sT..sGuTGATG.............TsA...................GAG...ssATG......ssuTs.....CA.uCA consensus/80% sT..sGuTGATG.............TsA...................GAG...ssATG......ssuTs.....CA.uCA consensus/70% sT..sGuTGATG.............TsA...................GAG...ssATG......ssuTs.....CA.uCA cov pid 7521 . . : . . . . 6 7600 1 2019nCoV 100.0% 100.0% tgccaatttagattcttgcaaaa-gag-tcttgaacgtggtg---tgtaaaac-ttgtggacaacagcagacaa------ 2 SARS 95.5% 77.9% tgctaatttggaatc-tgcaaagcgagttctt-aatgtggtg---tgta-aacattgtgg------tcagaaaa------ 3 MERS 74.7% 47.2% tg---gtttgga------------gag------a--gtggtgcaatgt------ctgtgg-------cataaaagatgtt consensus/100% TG...uTTTuGA............GAG......A..GTGGTG...TGT......sTGTGG.......CAsAsAA...... consensus/90% TG...uTTTuGA............GAG......A..GTGGTG...TGT......sTGTGG.......CAsAsAA...... consensus/80% TG...uTTTuGA............GAG......A..GTGGTG...TGT......sTGTGG.......CAsAsAA...... consensus/70% TG...uTTTuGA............GAG......A..GTGGTG...TGT......sTGTGG.......CAsAsAA...... cov pid 7601 . . . . : . . . 7680 1 2019nCoV 100.0% 100.0% ---c-----ccttaa-gggtgtagaagct-gttatgtacatggg----cacact-------ttct---------tatgaa 2 SARS 95.5% 77.9% ---ctactaccttaacgggtgtagaagct-gtgatgtatatggg----tactct-------atct---------tatga- 3 MERS 74.7% 47.2% gttctac------aa--ggcttaaaagcttgttgt-tacgtgggtgtgcaaactgttgaagatctgcgtgctcgcatga- consensus/100% ...C.........AA..GGssTAuAAGCT.GTsuT.TAsuTGGG....sAssCT.......sTCT.........sATGA. consensus/90% ...C.........AA..GGssTAuAAGCT.GTsuT.TAsuTGGG....sAssCT.......sTCT.........sATGA. consensus/80% ...C.........AA..GGssTAuAAGCT.GTsuT.TAsuTGGG....sAssCT.......sTCT.........sATGA. consensus/70% ...C.........AA..GGssTAuAAGCT.GTsuT.TAsuTGGG....sAssCT.......sTCT.........sATGA. cov pid 7681 . 7 . . . . : . 7760 1 2019nCoV 100.0% 100.0% caat-ttaagaaaggtgtt--cagataccttgtacgtgtggtaaac---aagctaca----aaatatctagtac-aacag 2 SARS 95.5% 77.9% taatcttaagacaggtgtttcc--attccatgtgtgtgtggt---cgtgatgctaca----caatatctagtac-aacaa 3 MERS 74.7% 47.2% ca----ta-------tgt------atgcca-gtgtg-gtggtgaacgt-------catcggcaat---tagt-cgaaca- consensus/100% sA....TA.......TGT......ATsCCs.GTusG.GTGGT...C.........CA....sAAT...TAGT.C.AACA. consensus/90% sA....TA.......TGT......ATsCCs.GTusG.GTGGT...C.........CA....sAAT...TAGT.C.AACA. consensus/80% sA....TA.......TGT......ATsCCs.GTusG.GTGGT...C.........CA....sAAT...TAGT.C.AACA. consensus/70% sA....TA.......TGT......ATsCCs.GTusG.GTGGT...C.........CA....sAAT...TAGT.C.AACA. cov pid 7761 . . . 8 . . . . 7840 1 2019nCoV 100.0% 100.0% gagtcaccttttgttatgatgtcagcaccacc----------tgctcagtatgaactta-agcatggtacatttactt-- 2 SARS 95.5% 77.9% gagtcttcttttgttatgatgtctgcaccacc----------tgctgagtataaa-ttacagcaaggtacatt--cttat 3 MERS 74.7% 47.2% -------------------------caccaccccctggttgctgctc---------tca------ggcaca----c---- consensus/100% .........................CACCACC..........TGCTs.........TsA......GGsACA....C.... consensus/90% .........................CACCACC..........TGCTs.........TsA......GGsACA....C.... consensus/80% .........................CACCACC..........TGCTs.........TsA......GGsACA....C.... consensus/70% .........................CACCACC..........TGCTs.........TsA......GGsACA....C.... cov pid 7841 : . . . . 9 . . 7920 1 2019nCoV 100.0% 100.0% gtgctagtga-------gt-aca-------------ctg-----gtaat---ta-------ccag--------------t 2 SARS 95.5% 77.9% gtgcgaatga-------gt-aca-------------ctg-----gtaac---ta-------tcag--------------t 3 MERS 74.7% 47.2% ---caaatgaaaaattggtgacaacctccacggcgcctgattttgtagcatttaatgtctttcagggcattgaaacggct consensus/100% ...CsAuTGA.......GT.ACA.............CTG.....GTAus...TA.......sCAG..............T consensus/90% ...CsAuTGA.......GT.ACA.............CTG.....GTAus...TA.......sCAG..............T consensus/80% ...CsAuTGA.......GT.ACA.............CTG.....GTAus...TA.......sCAG..............T consensus/70% ...CsAuTGA.......GT.ACA.............CTG.....GTAus...TA.......sCAG..............T cov pid 7921 . . : . . . . 0 8000 1 2019nCoV 100.0% 100.0% gt-ggtcactataaacatataact--tctaaagaaactttg----tattgca----tagac---ggtgctttac--tta- 2 SARS 95.5% 77.9% gt-ggtcattacactcatataact--gctaaggagaccctc----tatcgta----ttgac---ggagc-tcacc-tta- 3 MERS 74.7% 47.2% gttggccattatgttcatg---ctcgcctgaaggg----tggtcttattttaaagtttgactctgg-----caccgttag consensus/100% GT.GGsCAsTAsussCATu...CT..sCTuAuGuu....Ts....TATsssA....TsGAC...GG.....sAC..TTA. consensus/90% GT.GGsCAsTAsussCATu...CT..sCTuAuGuu....Ts....TATsssA....TsGAC...GG.....sAC..TTA. consensus/80% GT.GGsCAsTAsussCATu...CT..sCTuAuGuu....Ts....TATsssA....TsGAC...GG.....sAC..TTA. consensus/70% GT.GGsCAsTAsussCATu...CT..sCTuAuGuu....Ts....TATsssA....TsGAC...GG.....sAC..TTA. cov pid 8001 . . . . : . . . 8080 1 2019nCoV 100.0% 100.0% caaagtcctcaga------atacaaaggtcctattacggatg---ttttctac----aaagaaaacag-ttacacaa-ca 2 SARS 95.5% 77.9% caaagatgtcaga------gtacaaaggaccagtgactgatg---ttttctac----aaggaaa-catcttacacta-ca 3 MERS 74.7% 47.2% ca-agacttcagactggaagtgcaagg------tgacagatgtacttttccccggccaa--aaa------tacagtagcg consensus/100% CA.AGsssTCAGA......uTuCAAuG......TsACsGATG...TTTTCssC....AA..AAA......TACAssA.Cu consensus/90% CA.AGsssTCAGA......uTuCAAuG......TsACsGATG...TTTTCssC....AA..AAA......TACAssA.Cu consensus/80% CA.AGsssTCAGA......uTuCAAuG......TsACsGATG...TTTTCssC....AA..AAA......TACAssA.Cu consensus/70% CA.AGsssTCAGA......uTuCAAuG......TsACsGATG...TTTTCssC....AA..AAA......TACAssA.Cu cov pid 8081 . 1 . . . . : . 8160 1 2019nCoV 100.0% 100.0% accataaaaccagt-tactta--------taaattggatggtgttgttt--gtacagaaattgaccctaa---------- 2 SARS 95.5% 77.9% accatcaagcctgtgt-cgta--------taaactcgatggagttactt--acacagagattgaaccaaa---------- 3 MERS 74.7% 47.2% attgtaa----tgt---cgtacggtattct---ttggacg--gtaatttcagaacagaggttgatcccgacctatctgct consensus/100% AssuTsA....sGT...CsTA........T...sTsGAsG..GTsusTT..usACAGAuuTTGAsCCsuA.......... consensus/90% AssuTsA....sGT...CsTA........T...sTsGAsG..GTsusTT..usACAGAuuTTGAsCCsuA.......... consensus/80% AssuTsA....sGT...CsTA........T...sTsGAsG..GTsusTT..usACAGAuuTTGAsCCsuA.......... consensus/70% AssuTsA....sGT...CsTA........T...sTsGAsG..GTsusTT..usACAGAuuTTGAsCCsuA.......... cov pid 8161 . . . 2 . . . . 8240 1 2019nCoV 100.0% 100.0% ------gtt--ggacaatta------ttataag------------aa----------ag--acaattctta--------- 2 SARS 95.5% 77.9% ------att--ggatgggta------ttataaa------------aa----------gg--ataatgctta--------- 3 MERS 74.7% 47.2% ttctatgttaaggatgg-taaatactttacaagtgaaccacccgtaacatattcaccagctacaatt-ttagctggtagt consensus/100% ......uTT..GGAsuu.TA......TTAsAAu............AA..........uG..AsAATs.TTA......... consensus/90% ......uTT..GGAsuu.TA......TTAsAAu............AA..........uG..AsAATs.TTA......... consensus/80% ......uTT..GGAsuu.TA......TTAsAAu............AA..........uG..AsAATs.TTA......... consensus/70% ......uTT..GGAsuu.TA......TTAsAAu............AA..........uG..AsAATs.TTA......... cov pid 8241 : . . . . 3 . . 8320 1 2019nCoV 100.0% 100.0% --tttcac--agagcaaccaattgatcttgtacc---------aaaccaacc--------atat-ccaaacgc------- 2 SARS 95.5% 77.9% --ctatac--agagcagcctatagaccttgtacc---------aactcaacc--------at-taccaaatgc------- 3 MERS 74.7% 47.2% gtctacactaatagctgc--------cttgtatcgtctgatgga---caacctggcggtgat---------gctattagt consensus/100% ..sTssAC..AsAGCsuC........CTTGTAsC.........A...CAACC........AT.........GC....... consensus/90% ..sTssAC..AsAGCsuC........CTTGTAsC.........A...CAACC........AT.........GC....... consensus/80% ..sTssAC..AsAGCsuC........CTTGTAsC.........A...CAACC........AT.........GC....... consensus/70% ..sTssAC..AsAGCsuC........CTTGTAsC.........A...CAACC........AT.........GC....... cov pid 8321 . . : . . . . 4 8400 1 2019nCoV 100.0% 100.0% --aagcttcgataa--ttttaagtttgtatgtgataatatcaaatttgctgatgatt----taaaccagttaactggtt- 2 SARS 95.5% 77.9% --gagttttgataa--tttcaaactcacatgttctaacacaaaatttgctgatgatt----taaatcaaatgacaggctt 3 MERS 74.7% 47.2% ttgagttttaataaccttttagg-------gtt-------------------tgattctagtaaaccag----------- consensus/100% ..uAGsTTsuATAA..TTTsAuu.......GTs...................TGATT....TAAAsCAu........... consensus/90% ..uAGsTTsuATAA..TTTsAuu.......GTs...................TGATT....TAAAsCAu........... consensus/80% ..uAGsTTsuATAA..TTTsAuu.......GTs...................TGATT....TAAAsCAu........... consensus/70% ..uAGsTTsuATAA..TTTsAuu.......GTs...................TGATT....TAAAsCAu........... cov pid 8401 . . . . : . . . 8480 1 2019nCoV 100.0% 100.0% -ataagaaacctgcttcaa-gagagcttaaa---gttaca--------tttttccctgacttaaa-----tggtgatgtg 2 SARS 95.5% 77.9% caca--aagccagcttcac-gagagct---atctgtcaca--------ttcttcccagacttgaa-----tggcgatgta 3 MERS 74.7% 47.2% ---------------tcactaaga-----aa-----tacacttactccttcttgcc-----taaagaagacggcgatgtg consensus/100% ...............TCAs.uAGA......A.....sACA........TTsTTsCC.....TuAA.....sGGsGATGTu consensus/90% ...............TCAs.uAGA......A.....sACA........TTsTTsCC.....TuAA.....sGGsGATGTu consensus/80% ...............TCAs.uAGA......A.....sACA........TTsTTsCC.....TuAA.....sGGsGATGTu consensus/70% ...............TCAs.uAGA......A.....sACA........TTsTTsCC.....TuAA.....sGGsGATGTu cov pid 8481 . 5 . . . . : . 8560 1 2019nCoV 100.0% 100.0% --gt-ggcta---ttgat---tataaacactacacaccctc------ttttaagaaaggagctaaattgttacataaa-- 2 SARS 95.5% 77.9% --gt-ggcta---ttgac---tatagacactat------tcagcgagtttcaagaaaggtgctaaattactgcataag-- 3 MERS 74.7% 47.2% ttgttggctgagtttgacacttat-gaccctat--------------ttataagaatggtgcca------tgtataaagg consensus/100% ..GT.GGCTu...TTGAs...TAT.uACsCTAs..............TTssAAGAAsGGsGCsA......TusATAAu.. consensus/90% ..GT.GGCTu...TTGAs...TAT.uACsCTAs..............TTssAAGAAsGGsGCsA......TusATAAu.. consensus/80% ..GT.GGCTu...TTGAs...TAT.uACsCTAs..............TTssAAGAAsGGsGCsA......TusATAAu.. consensus/70% ..GT.GGCTu...TTGAs...TAT.uACsCTAs..............TTssAAGAAsGGsGCsA......TusATAAu.. cov pid 8561 . . . 6 . . . . 8640 1 2019nCoV 100.0% 100.0% ----cctattgtttgg----------catgtta----acaa---t--gcaa--ctaataaagcca-----cgtataaacc 2 SARS 95.5% 77.9% ----ccaattgtttgg----------cacatta----accaggct--acaa--ccaaga---caa-----cgttcaaacc 3 MERS 74.7% 47.2% caaaccaattctttgggtcaataaagcatcttatgatactaatcttaataagttcaatagagctagtttgcgt------c consensus/100% ....CCsATTsTTTGG..........CAssTTA....ACsA...T..usAA..ssAAsA...CsA.....CGT......C consensus/90% ....CCsATTsTTTGG..........CAssTTA....ACsA...T..usAA..ssAAsA...CsA.....CGT......C consensus/80% ....CCsATTsTTTGG..........CAssTTA....ACsA...T..usAA..ssAAsA...CsA.....CGT......C consensus/70% ....CCsATTsTTTGG..........CAssTTA....ACsA...T..usAA..ssAAsA...CsA.....CGT......C cov pid 8641 : . . . . 7 . . 8720 1 2019nCoV 100.0% 100.0% aaatacctggtgtata-----cgttg--------------------tctttg------gagc--acaaaaccagttgaaa 2 SARS 95.5% 77.9% aaacacttggtgttta-----cgttg--------------------tctttg------gagt--acaaagccagtagata 3 MERS 74.7% 47.2% aaatttttgacgt--agcccccattgaactcgaaaataaattcacacctttgagtgtggagtctaca---ccagttga-a consensus/100% AAAssssTGusGT..A.....CuTTG....................sCTTTG......GAGs..ACA...CCAGTsGA.A consensus/90% AAAssssTGusGT..A.....CuTTG....................sCTTTG......GAGs..ACA...CCAGTsGA.A consensus/80% AAAssssTGusGT..A.....CuTTG....................sCTTTG......GAGs..ACA...CCAGTsGA.A consensus/70% AAAssssTGusGT..A.....CuTTG....................sCTTTG......GAGs..ACA...CCAGTsGA.A cov pid 8721 . . : . . . . 8 8800 1 2019nCoV 100.0% 100.0% catcaaattcgtttgatgtactga-agtcagaggacgc----gcagggaatggataatcttgcc---tgcgaagatctaa 2 SARS 95.5% 77.9% cttcaaattcatttgaagttctggcagt-agaagacac----acaaggaatggacaatcttgct---tgtgaaagtc-aa 3 MERS 74.7% 47.2% cctccaact--gtagatgt------ggt-ag----cacttcaacaggaaat-gacaa--ttgtcaaatgtaagggtttaa consensus/100% CsTCsAAsT..sTsGAsGT......uGT.AG....CuC....uCAuGuAAT.GAsAA..TTGss...TGsuAuuuTs.AA consensus/90% CsTCsAAsT..sTsGAsGT......uGT.AG....CuC....uCAuGuAAT.GAsAA..TTGss...TGsuAuuuTs.AA consensus/80% CsTCsAAsT..sTsGAsGT......uGT.AG....CuC....uCAuGuAAT.GAsAA..TTGss...TGsuAuuuTs.AA consensus/70% CsTCsAAsT..sTsGAsGT......uGT.AG....CuC....uCAuGuAAT.GAsAA..TTGss...TGsuAuuuTs.AA cov pid 8801 . . . . : . . . 8880 1 2019nCoV 100.0% 100.0% -a---accagtctc-tgaag-----------------------------aagta-----gt------------------g 2 SARS 95.5% 77.9% ca---acccacctc-tgaag-----------------------------aagta-----gt------------------g 3 MERS 74.7% 47.2% -ataaacc--tttcgtgaaggacaatgtcagtttcgttgctgatgattcaggtactcccgttgttgagtatctgtctaaa consensus/100% .A...ACC..ssTC.TGAAG.............................AuGTA.....GT..................u consensus/90% .A...ACC..ssTC.TGAAG.............................AuGTA.....GT..................u consensus/80% .A...ACC..ssTC.TGAAG.............................AuGTA.....GT..................u consensus/70% .A...ACC..ssTC.TGAAG.............................AuGTA.....GT..................u cov pid 8881 . 9 . . . . : . 8960 1 2019nCoV 100.0% 100.0% gaaaatcctaccatacagaaagacgttcttgagtgtaatgtgaa----aactaccgaag---ttgt------aggagaca 2 SARS 95.5% 77.9% gaaaatcctaccatacagaaggaagtcatagagtgtgacgtgaa----aactaccgaag---ttgt------aggcaatg 3 MERS 74.7% 47.2% gaaga-ccta-cataca--------t-------tgt-atgtagaccctaagtatc-aagtcattgtcttaaaagacaatg consensus/100% GAAuA.CCTA.CATACA........T.......TGT.AsGTuuA....AAsTAsC.AAG...TTGT......AGusuAsu consensus/90% GAAuA.CCTA.CATACA........T.......TGT.AsGTuuA....AAsTAsC.AAG...TTGT......AGusuAsu consensus/80% GAAuA.CCTA.CATACA........T.......TGT.AsGTuuA....AAsTAsC.AAG...TTGT......AGusuAsu consensus/70% GAAuA.CCTA.CATACA........T.......TGT.AsGTuuA....AAsTAsC.AAG...TTGT......AGusuAsu cov pid 8961 . . . 0 . . . . 9040 1 2019nCoV 100.0% 100.0% t---------tatacttaaa-------ccag-----caaataatagt-ttaaaa----attacagaagaggtt-ggccac 2 SARS 95.5% 77.9% t---------catacttaaa-------ccat-----cagatgaaggtgtt-aaa----gtaacacaagag-ttaggtcat 3 MERS 74.7% 47.2% tactttcttctatgcttagattgcacaccgttgagtcaggtgata---tt--aacgttgttgca-----gctt---cc-- consensus/100% T.........sATuCTTAuA.......CCus.....CAuuTuAsu...TT..AA....uTsuCA.....G.TT...sC.. consensus/90% T.........sATuCTTAuA.......CCus.....CAuuTuAsu...TT..AA....uTsuCA.....G.TT...sC.. consensus/80% T.........sATuCTTAuA.......CCus.....CAuuTuAsu...TT..AA....uTsuCA.....G.TT...sC.. consensus/70% T.........sATuCTTAuA.......CCus.....CAuuTuAsu...TT..AA....uTsuCA.....G.TT...sC.. cov pid 9041 : . . . . 1 . . 9120 1 2019nCoV 100.0% 100.0% acagatctaatggctgcttatgta----gacaattctagtcttactattaagaaacctaatgaattatctagagta---t 2 SARS 95.5% 77.9% gaggatcttatggctgcttatgtg----gaaaacacaagcattaccattaagaaacctaatgagctttc---actagcct 3 MERS 74.7% 47.2% --ggatctt-tgac-----acgtaaagtga-------ag--ttactatt--------ta--gggct-tc---att----t consensus/100% ..uGATCTs.TGuC.....AsGTu....GA.......AG..TTACsATT........TA..GuusT.TC...AsT....T consensus/90% ..uGATCTs.TGuC.....AsGTu....GA.......AG..TTACsATT........TA..GuusT.TC...AsT....T consensus/80% ..uGATCTs.TGuC.....AsGTu....GA.......AG..TTACsATT........TA..GuusT.TC...AsT....T consensus/70% ..uGATCTs.TGuC.....AsGTu....GA.......AG..TTACsATT........TA..GuusT.TC...AsT....T cov pid 9121 . . : . . . . 2 9200 1 2019nCoV 100.0% 100.0% taggtttgaaaacccttgctac--------tca-tggt-ttagctgctgt---taat---------agtgtcccttggga 2 SARS 95.5% 77.9% taggtttaaaaacaattgccac--------tca-tggtatt-gctgcaat---taat---------agtgttccttggag 3 MERS 74.7% 47.2% ta--tttcaaagaatttgctacccgcactttcactgctacc-actgctgtaggtagttgtataaagagtgt--------- consensus/100% TA..TTTsAAAusssTTGCsAC........TCA.TGsT.ss.uCTGCsuT...TAuT.........AGTGT......... consensus/90% TA..TTTsAAAusssTTGCsAC........TCA.TGsT.ss.uCTGCsuT...TAuT.........AGTGT......... consensus/80% TA..TTTsAAAusssTTGCsAC........TCA.TGsT.ss.uCTGCsuT...TAuT.........AGTGT......... consensus/70% TA..TTTsAAAusssTTGCsAC........TCA.TGsT.ss.uCTGCsuT...TAuT.........AGTGT......... cov pid 9201 . . . . : . . . 9280 1 2019nCoV 100.0% 100.0% t---actatagctaattatgctaagccttttctta--acaa--agttgttagtacaactactaa---cat--agttac-- 2 SARS 95.5% 77.9% taaaattttggc---ttatgtcaaaccatt-cttaggacaagcag---------caattac-aa---catcaaattgcgc 3 MERS 74.7% 47.2% ----agtgcggc-----at------------ct----------aggtgt---------tactaaaggcat---attg--- consensus/100% ....AsTssuGC.....AT............CT..........AG.............TAC.AA...CAT...uTTu... consensus/90% ....AsTssuGC.....AT............CT..........AG.............TAC.AA...CAT...uTTu... consensus/80% ....AsTssuGC.....AT............CT..........AG.............TAC.AA...CAT...uTTu... consensus/70% ....AsTssuGC.....AT............CT..........AG.............TAC.AA...CAT...uTTu... cov pid 9281 . 3 . . . . : . 9360 1 2019nCoV 100.0% 100.0% ---------------acg-g--tgtttaaaccgtgtttgtactaa----ttat--atgcct----tatttctttacttta 2 SARS 95.5% 77.9% taagagattagcacaacgtg--tgtttaa-------------caa----ttat--atgcct----tatgtgtttacatta 3 MERS 74.7% 47.2% ---------------aca-ggctgtttta-----gttt-tgccaagatgttatttatgcttccacta---gcttacttta consensus/100% ...............ACu.G..TGTTTsA.............sAA....TTAT..ATGCsT....TA...ssTTACsTTA consensus/90% ...............ACu.G..TGTTTsA.............sAA....TTAT..ATGCsT....TA...ssTTACsTTA consensus/80% ...............ACu.G..TGTTTsA.............sAA....TTAT..ATGCsT....TA...ssTTACsTTA consensus/70% ...............ACu.G..TGTTTsA.............sAA....TTAT..ATGCsT....TA...ssTTACsTTA cov pid 9361 . . . 4 . . . . 9440 1 2019nCoV 100.0% 100.0% ttgctacaa---ttgtgtacttttactagaagtacaaattctagaattaaagcat------c--tatgccgactactata 2 SARS 95.5% 77.9% ttgttccaa---ttgtgtacttttactaaaagtaccaattctagaattagagctt------cacta--cctacaactatt 3 MERS 74.7% 47.2% gtgattcaaaactcg-gcac---cac-agaggt--------taaagtgagtgctttgaaaaca----gccggc----gtt consensus/100% sTGsTsCAA...TsG.GsAC...sAC.AuAuGT........TAuAuTsAusGCsT......C......CCsuC....uTs consensus/90% sTGsTsCAA...TsG.GsAC...sAC.AuAuGT........TAuAuTsAusGCsT......C......CCsuC....uTs consensus/80% sTGsTsCAA...TsG.GsAC...sAC.AuAuGT........TAuAuTsAusGCsT......C......CCsuC....uTs consensus/70% sTGsTsCAA...TsG.GsAC...sAC.AuAuGT........TAuAuTsAusGCsT......C......CCsuC....uTs cov pid 9441 : . . . . 5 . . 9520 1 2019nCoV 100.0% 100.0% gcaaagaatactgtt----aagagtgtcgg----------------taaattttgtctaga----ggcttcatttaa-tt 2 SARS 95.5% 77.9% gctaaaaatagtgtt----aagagtgttgc----------------taaattatgtttggatgccgg---cat-taa-tt 3 MERS 74.7% 47.2% gtgacaggtaatgttgtaaaacagtgttgcactgctgctgttgatttaa-----gtatgga-------------taagtt consensus/100% GssAsuuuTAsTGTT....AAsAGTGTsGs................TAA.....GTsTuGA.............TAA.TT consensus/90% GssAsuuuTAsTGTT....AAsAGTGTsGs................TAA.....GTsTuGA.............TAA.TT consensus/80% GssAsuuuTAsTGTT....AAsAGTGTsGs................TAA.....GTsTuGA.............TAA.TT consensus/70% GssAsuuuTAsTGTT....AAsAGTGTsGs................TAA.....GTsTuGA.............TAA.TT cov pid 9521 . . : . . . . 6 9600 1 2019nCoV 100.0% 100.0% -----------atttgaagtca--ccta--------attt-----------------------------ttcta------ 2 SARS 95.5% 77.9% -----------atgtgaagtca--ccca--------aatt-----------------------------ttcta------ 3 MERS 74.7% 47.2% gcgccgtgtggattggaaatcaaccctacggttgttacttatgttatgcacaactatggtattgttgtcttctgtgtatc consensus/100% ...........ATssGAAuTCA..CCsA........AsTT.............................TTCTu...... consensus/90% ...........ATssGAAuTCA..CCsA........AsTT.............................TTCTu...... consensus/80% ...........ATssGAAuTCA..CCsA........AsTT.............................TTCTu...... consensus/70% ...........ATssGAAuTCA..CCsA........AsTT.............................TTCTu...... cov pid 9601 . . . . : . . . 9680 1 2019nCoV 100.0% 100.0% aactgataaatatt-ataatt------tggtttttac-------tattaagtgtttg-------cctaggtt-------- 2 SARS 95.5% 77.9% aattg-------ttcacaatcgctatgtggctattgt-------tgttaagtatttg-------cttaggtt-------- 3 MERS 74.7% 47.2% acttg-tatgtctt--caatc---a---gg-tcttatcaagtgatgtta--tgtttgaagatgcccaaggtttgaaaaag consensus/100% AssTG.......TT..sAATs.......GG.TsTTus.......TuTTA..TuTTTG.......CssAGGTT........ consensus/90% AssTG.......TT..sAATs.......GG.TsTTus.......TuTTA..TuTTTG.......CssAGGTT........ consensus/80% AssTG.......TT..sAATs.......GG.TsTTus.......TuTTA..TuTTTG.......CssAGGTT........ consensus/70% AssTG.......TT..sAATs.......GG.TsTTus.......TuTTA..TuTTTG.......CssAGGTT........ cov pid 9681 . 7 . . . . : . 9760 1 2019nCoV 100.0% 100.0% cttta-------------------------atctactcaaccgctgctttaggtgt---tttaatgtctaatttaggcat 2 SARS 95.5% 77.9% ctcta-------------------------atctgtgtaactgctgcttttggtgtactctta---tctaattttgg--t 3 MERS 74.7% 47.2% ttctacaaagaagttagagcttacctaggaatct------cttctgctt---gtg-------acggtct----------t consensus/100% sTsTA.........................ATCT......CssCTGCTT...GTG.......A...TCT..........T consensus/90% sTsTA.........................ATCT......CssCTGCTT...GTG.......A...TCT..........T consensus/80% sTsTA.........................ATCT......CssCTGCTT...GTG.......A...TCT..........T consensus/70% sTsTA.........................ATCT......CssCTGCTT...GTG.......A...TCT..........T cov pid 9761 . . . 8 . . . . 9840 1 2019nCoV 100.0% 100.0% g--cctt---cttactgtactgg--ttacagagaa--ggctatttgaactc-tact--aatgtcactattgcaaccta-- 2 SARS 95.5% 77.9% gctcctt---cttattgtaatggcgtta--gagaattg--tatcttaattcgt-ct--aacgttacta-------ctatg 3 MERS 74.7% 47.2% g---cttcagcttatag----ggc-------------g--------aattc---ctttgatgt----------acctac- consensus/100% G...CTT...CTTAssG....GG..............G........AAsTC...CT..uAsGT............CTA.. consensus/90% G...CTT...CTTAssG....GG..............G........AAsTC...CT..uAsGT............CTA.. consensus/80% G...CTT...CTTAssG....GG..............G........AAsTC...CT..uAsGT............CTA.. consensus/70% G...CTT...CTTAssG....GG..............G........AAsTC...CT..uAsGT............CTA.. cov pid 9841 : . . . . 9 . . 9920 1 2019nCoV 100.0% 100.0% -----ctgt--actg------gttctataccttgtagtgt----ttgtcttagtg---gtttag-----attctttagac 2 SARS 95.5% 77.9% gatttctgtgaa--g------gttcttttccttgcagcat----ttgtttaagtg---gattag-----actcccttgat 3 MERS 74.7% 47.2% -att-ctgc-----gcaaaccgttc-------tgcaatgtgtaattg-----gtgcttgattagccaagattccata-ac consensus/100% .....CTGs.....G......GTTC.......TGsAusuT....TTG.....GTG...GsTTAG.....AsTCssTs.As consensus/90% .....CTGs.....G......GTTC.......TGsAusuT....TTG.....GTG...GsTTAG.....AsTCssTs.As consensus/80% .....CTGs.....G......GTTC.......TGsAusuT....TTG.....GTG...GsTTAG.....AsTCssTs.As consensus/70% .....CTGs.....G......GTTC.......TGsAusuT....TTG.....GTG...GsTTAG.....AsTCssTs.As cov pid 9921 . . : . . . . 0 10000 1 2019nCoV 100.0% 100.0% ac-ctatcc--ttctttaga-------aactataca----aattaccat-ttcatcttttaaatgggatttaactgctt- 2 SARS 95.5% 77.9% tc-ttatccagctctt--ga-------aaccattca----ggtgacgat-ttcatcgtacaagctagacttgacaattt- 3 MERS 74.7% 47.2% tcactacccagctcttaagatggttcaaac---acatcttagccactatgttc----------------ttaaca---ta consensus/100% sC.sTAsCC..sTCTT..GA.......AAC...sCA....uussACsAT.TTC................TTuACs...T. consensus/90% sC.sTAsCC..sTCTT..GA.......AAC...sCA....uussACsAT.TTC................TTuACs...T. consensus/80% sC.sTAsCC..sTCTT..GA.......AAC...sCA....uussACsAT.TTC................TTuACs...T. consensus/70% sC.sTAsCC..sTCTT..GA.......AAC...sCA....uussACsAT.TTC................TTuACs...T. cov pid 10001 . . . . : . . . 10080 1 2019nCoV 100.0% 100.0% --ttggct-tagt-tgca---gag--tggtttttggcatatattcttt-----tcactaggtttttctatgta------c 2 SARS 95.5% 77.9% --taggtc-tggc-cgct---gag--tgggttttggcatatatgttgt-----tcacaaaattcttttatttattaggtc 3 MERS 74.7% 47.2% gattggttgtggtttgcatttgagactgg--tttggcatacatgctctatacctc---------------------ggcc consensus/100% ..TsGGss.TuGs.sGCs...GAG..TGG..TTTGGCATAsATssTsT.....TC........................C consensus/90% ..TsGGss.TuGs.sGCs...GAG..TGG..TTTGGCATAsATssTsT.....TC........................C consensus/80% ..TsGGss.TuGs.sGCs...GAG..TGG..TTTGGCATAsATssTsT.....TC........................C consensus/70% ..TsGGss.TuGs.sGCs...GAG..TGG..TTTGGCATAsATssTsT.....TC........................C cov pid 10081 . 1 . . . . : . 10160 1 2019nCoV 100.0% 100.0% ttggattggctgcaatcatgcaattgtttttcagc-------------tattt---tgc-agtaca---ttttattagta 2 SARS 95.5% 77.9% tt---tcagct---ataatgcaggtgttctttggc-------------tattt---tgctagt-ca---tttcatcagca 3 MERS 74.7% 47.2% t----tcaactg----------gttgttgtt-ggcaggtacattgcattatttctttgc-a---cagacttccat----- consensus/100% T....TsuuCT...........usTGTTsTT.uGC.............TATTT...TGC.A...CA...TTssAT..... consensus/90% T....TsuuCT...........usTGTTsTT.uGC.............TATTT...TGC.A...CA...TTssAT..... consensus/80% T....TsuuCT...........usTGTTsTT.uGC.............TATTT...TGC.A...CA...TTssAT..... consensus/70% T....TsuuCT...........usTGTTsTT.uGC.............TATTT...TGC.A...CA...TTssAT..... cov pid 10161 . . . 2 . . . . 10240 1 2019nCoV 100.0% 100.0% attc-----ttggc----------ttatg-----------------tggttaataattaatcttgtaca----------a 2 SARS 95.5% 77.9% attc-----ttggc----------tcatg-----------------tggtttatcattagtattgtaca----------a 3 MERS 74.7% 47.2% atttgtagactggcggtcatacaattatgctgtgtctagtgccttctggtt----att---------cacccacattcca consensus/100% ATTs.....sTGGC..........TsATG.................TGGTT....ATT.........CA..........A consensus/90% ATTs.....sTGGC..........TsATG.................TGGTT....ATT.........CA..........A consensus/80% ATTs.....sTGGC..........TsATG.................TGGTT....ATT.........CA..........A consensus/70% ATTs.....sTGGC..........TsATG.................TGGTT....ATT.........CA..........A cov pid 10241 : . . . . 3 . . 10320 1 2019nCoV 100.0% 100.0% atggc-cccgatttcagctatggt----ta-gaatgtacatcttctttgcat--catt--ttattatgtatggaaaagtt 2 SARS 95.5% 77.9% atggcacccg-tttctgcaatggt----ta-ggatgtacatcttctttgctt--cttt--ctactacatatggaagagct 3 MERS 74.7% 47.2% atggc----g-----------ggtttggtacgaatgtataatttgttagcatgcctttggcttttacgca------agtt consensus/100% ATGGC....G...........GGT....TA.GuATGTAsAssTTsTTsGCsT..CsTT..sTssTAsusA......AGsT consensus/90% ATGGC....G...........GGT....TA.GuATGTAsAssTTsTTsGCsT..CsTT..sTssTAsusA......AGsT consensus/80% ATGGC....G...........GGT....TA.GuATGTAsAssTTsTTsGCsT..CsTT..sTssTAsusA......AGsT consensus/70% ATGGC....G...........GGT....TA.GuATGTAsAssTTsTTsGCsT..CsTT..sTssTAsusA......AGsT cov pid 10321 . . : . . . . 4 10400 1 2019nCoV 100.0% 100.0% atgt--gcatgttgtagacggttgtaattcatcaa-----------cttgtatgatgtgttacaaacgtaatagagcaac 2 SARS 95.5% 77.9% atgt--tcatatcatggatggttgcacctcttcga-----------cttgcatgatgtgctataagcgcaatcgtgccac 3 MERS 74.7% 47.2% ttatcagcatgtaatcaatggttgca-------aagatacggcatgcttgc----tctgctataagaggaaccgacttac consensus/100% sTuT..sCATuTsuTsuAsGGTTGsA.......uA...........CTTGs....TsTGsTAsAAusGsAAssGssssAC consensus/90% sTuT..sCATuTsuTsuAsGGTTGsA.......uA...........CTTGs....TsTGsTAsAAusGsAAssGssssAC consensus/80% sTuT..sCATuTsuTsuAsGGTTGsA.......uA...........CTTGs....TsTGsTAsAAusGsAAssGssssAC consensus/70% sTuT..sCATuTsuTsuAsGGTTGsA.......uA...........CTTGs....TsTGsTAsAAusGsAAssGssssAC cov pid 10401 . . . . : . . . 10480 1 2019nCoV 100.0% 100.0% aagagtcgaa-----tgtacaactattgttaatggtgttagaaggt-ccttttatgtc-tatgctaatggagg---taaa 2 SARS 95.5% 77.9% acgcgttgag-----tgtacaactattgttaatggcatgaagagat-ctttctatgtc-tatgcaaatggaggccgt--- 3 MERS 74.7% 47.2% tagagttgaagcttct-----accgttgtctgtggtg-gaaaacgtacgttttatatcaca-gcaaatggcgg---ta-- consensus/100% ssGsGTsGAu.....T.....ACsuTTGTssuTGGsu.sAuuAsuT.CsTTsTATuTC.sA.GCsAATGGsGG...T... consensus/90% ssGsGTsGAu.....T.....ACsuTTGTssuTGGsu.sAuuAsuT.CsTTsTATuTC.sA.GCsAATGGsGG...T... consensus/80% ssGsGTsGAu.....T.....ACsuTTGTssuTGGsu.sAuuAsuT.CsTTsTATuTC.sA.GCsAATGGsGG...T... consensus/70% ssGsGTsGAu.....T.....ACsuTTGTssuTGGsu.sAuuAsuT.CsTTsTATuTC.sA.GCsAATGGsGG...T... cov pid 10481 . 5 . . . . : . 10560 1 2019nCoV 100.0% 100.0% ggctttt---------gcaa-actacacaattggaattgtgttaattgtgatacattctgtgctggt------agtacat 2 SARS 95.5% 77.9% ggcttct---------gcaagact-cacaattggaattgtctcaattgtgacacattttgcactggt------agtacat 3 MERS 74.7% 47.2% ----tttcattctgtcgtagg----cataattggaattgtgtggattgtgacac----tgca--ggtgtggggaatacct consensus/100% ....TsT.........GsAu.....CAsAATTGGAATTGTsTsuATTGTGAsAC....TGsu..GGT......AuTACsT consensus/90% ....TsT.........GsAu.....CAsAATTGGAATTGTsTsuATTGTGAsAC....TGsu..GGT......AuTACsT consensus/80% ....TsT.........GsAu.....CAsAATTGGAATTGTsTsuATTGTGAsAC....TGsu..GGT......AuTACsT consensus/70% ....TsT.........GsAu.....CAsAATTGGAATTGTsTsuATTGTGAsAC....TGsu..GGT......AuTACsT cov pid 10561 . . . 6 . . . . 10640 1 2019nCoV 100.0% 100.0% ttattagtgatgaagttgcgagagacttgtcactacag---tttaaa---agaccaataaatcctactgaccag-tcttc 2 SARS 95.5% 77.9% tcattagtgatgaagttgctcgtgatttgtcactccag---tttaaa---agaccaatcaaccctactgaccag-tcatc 3 MERS 74.7% 47.2% tcatctgtgaagaagtcgcaaatgacc--tcactaccgccct----acgcaggcctattaacgctacgga-tagatc--- consensus/100% TsATssGTGAsGAAGTsGCssusGAss..TCACTsCsG...T....A...AGuCCsATsAAssCTACsGA.sAG.TC... consensus/90% TsATssGTGAsGAAGTsGCssusGAss..TCACTsCsG...T....A...AGuCCsATsAAssCTACsGA.sAG.TC... consensus/80% TsATssGTGAsGAAGTsGCssusGAss..TCACTsCsG...T....A...AGuCCsATsAAssCTACsGA.sAG.TC... consensus/70% TsATssGTGAsGAAGTsGCssusGAss..TCACTsCsG...T....A...AGuCCsATsAAssCTACsGA.sAG.TC... cov pid 10641 : . . . . 7 . . 10720 1 2019nCoV 100.0% 100.0% ttacatcgttgatagt-------gttacagtgaagaa---tgg-----ttccatccatctttactttgat------aaag 2 SARS 95.5% 77.9% gtatattgttgatagt-------gttgctgtgaaaaa---tggcgcgctt-----cacctctactttgac------aagg 3 MERS 74.7% 47.2% --acattatt-at-gtggattccgttacagttaaagagactg------tt--g------ttcagtttaattatcgtagag consensus/100% ..AsATsuTT.AT.GT.......GTTuCsGTsAAuuA...TG......TT.........TssAsTTTuAs......AuuG consensus/90% ..AsATsuTT.AT.GT.......GTTuCsGTsAAuuA...TG......TT.........TssAsTTTuAs......AuuG consensus/80% ..AsATsuTT.AT.GT.......GTTuCsGTsAAuuA...TG......TT.........TssAsTTTuAs......AuuG consensus/70% ..AsATsuTT.AT.GT.......GTTuCsGTsAAuuA...TG......TT.........TssAsTTTuAs......AuuG cov pid 10721 . . : . . . . 8 10800 1 2019nCoV 100.0% 100.0% ctggtcaaaagac----ttatgaaagacattctctct---ctcattttgttaacttagacaacctgagagctaataacac 2 SARS 95.5% 77.9% ctggtcaaaagac----ctatgagagacatccgctct---cccattttgtcaatttagacaatttgagagctaacaacac 3 MERS 74.7% 47.2% acggtcaa----ccattctacgagcggtttcccctctgcgc---ttttacaaatctagataagttga-agtt--caa--- consensus/100% ssGGTCAA....C....sTAsGAusGussTsCsCTCT...C...TTTTussAAssTAGAsAAssTGA.AGsT..sAA... consensus/90% ssGGTCAA....C....sTAsGAusGussTsCsCTCT...C...TTTTussAAssTAGAsAAssTGA.AGsT..sAA... consensus/80% ssGGTCAA....C....sTAsGAusGussTsCsCTCT...C...TTTTussAAssTAGAsAAssTGA.AGsT..sAA... consensus/70% ssGGTCAA....C....sTAsGAusGussTsCsCTCT...C...TTTTussAAssTAGAsAAssTGA.AGsT..sAA... cov pid 10801 . . . . : . . . 10880 1 2019nCoV 100.0% 100.0% taaaggttcattgc----ctattaatgttatagtt---------ttt------------------gat--------ggta 2 SARS 95.5% 77.9% taaaggttcactgc----ctattaatgtcatagtt---------ttt------------------gat--------ggca 3 MERS 74.7% 47.2% -agaggt---ctgtaaaactactactggtatacctgaatacaactttatcatctacgactcatcagatcgtggccaggaa consensus/100% .AuAGGT...sTGs....CTAsTAsTGssATAssT.........TTT..................GAT........GGsA consensus/90% .AuAGGT...sTGs....CTAsTAsTGssATAssT.........TTT..................GAT........GGsA consensus/80% .AuAGGT...sTGs....CTAsTAsTGssATAssT.........TTT..................GAT........GGsA consensus/70% .AuAGGT...sTGs....CTAsTAsTGssATAssT.........TTT..................GAT........GGsA cov pid 10881 . 9 . . . . : . 10960 1 2019nCoV 100.0% 100.0% aatcaaaatgtgaagaatcatctgc---aaaatcagcgtctgtttactac-----agtcagcttatgtgtcaacctatac 2 SARS 95.5% 77.9% agtccaaatgcgacgagtc---tgcttctaagtctgcttctgtgtactac-----agtcagctgatgtgccaacctattc 3 MERS 74.7% 47.2% agttta-----------------gc---taggtctgcatgtgtttattattctcaagt---ct--tgtgtaaatcaattc consensus/100% AuTssA.................GC...sAuuTCsGCsTsTGTsTAsTAs.....AGT...CT..TGTGssAAsCsATsC consensus/90% AuTssA.................GC...sAuuTCsGCsTsTGTsTAsTAs.....AGT...CT..TGTGssAAsCsATsC consensus/80% AuTssA.................GC...sAuuTCsGCsTsTGTsTAsTAs.....AGT...CT..TGTGssAAsCsATsC consensus/70% AuTssA.................GC...sAuuTCsGCsTsTGTsTAsTAs.....AGT...CT..TGTGssAAsCsATsC cov pid 10961 . . . 0 . . . . 11040 1 2019nCoV 100.0% 100.0% tgttactagat-caggcattag--tg--tctgatgttggtgat---agtgcggaagttgcagttaaaatgtttgatgctt 2 SARS 95.5% 77.9% tgttgcttgac-caagctcttg--ta--tcagacgttggagat---agtactgaagtttccgttaagatgtttgatgctt 3 MERS 74.7% 47.2% ttttggttgactcaag--tttggttacttc---tgttggtgattctagt---gaaatcgccactaaaatgtttgattcct consensus/100% TsTTusTsGAs.CAuG..sTsG..Tu..TC...sGTTGGsGAT...AGT...GAAuTssCsusTAAuATGTTTGATsCsT consensus/90% TsTTusTsGAs.CAuG..sTsG..Tu..TC...sGTTGGsGAT...AGT...GAAuTssCsusTAAuATGTTTGATsCsT consensus/80% TsTTusTsGAs.CAuG..sTsG..Tu..TC...sGTTGGsGAT...AGT...GAAuTssCsusTAAuATGTTTGATsCsT consensus/70% TsTTusTsGAs.CAuG..sTsG..Tu..TC...sGTTGGsGAT...AGT...GAAuTssCsusTAAuATGTTTGATsCsT cov pid 11041 : . . . . 1 . . 11120 1 2019nCoV 100.0% 100.0% acgttaatacgttt----tcatcaacttt-taacgtac-----caat-----ggaaaaactcaaaacactagttgcaact 2 SARS 95.5% 77.9% atgtcgacaccttt----tcagcaacttt-tagtgttc-----ctat-----ggaaaaacttaaggcacttgttgctac- 3 MERS 74.7% 47.2% ttgttaata-gtttcgtctc----gctgtataatgt-cacacgcgataagttggaaaaactta---------tctctact consensus/100% ssGTsuAsA.sTTT....TC....uCTsT.TAusGT.C.....CsAT.....GGAAAAACTsA.........TssCsAC. consensus/90% ssGTsuAsA.sTTT....TC....uCTsT.TAusGT.C.....CsAT.....GGAAAAACTsA.........TssCsAC. consensus/80% ssGTsuAsA.sTTT....TC....uCTsT.TAusGT.C.....CsAT.....GGAAAAACTsA.........TssCsAC. consensus/70% ssGTsuAsA.sTTT....TC....uCTsT.TAusGT.C.....CsAT.....GGAAAAACTsA.........TssCsAC. cov pid 11121 . . : . . . . 2 11200 1 2019nCoV 100.0% 100.0% gcagaagct------gaacttgc--aaag---aatg-tgtcct---tagacaatgtcttatctacttttattt----cag 2 SARS 95.5% 77.9% -----agctcacagcgagttagc--aaag---ggtg-tagctt---tagatggtgtcctttctacattcgtgt----cag 3 MERS 74.7% 47.2% ------gctc---gtga--tggcgtaaggcgaggcgataacttccatag----tgtcttaacaacattcat-tgacgcag consensus/100% ......GCT......GA..TsGC..AAuG...uusG.TusCsT...TAG....TGTCsTssCsACsTTsuT.T....CAG consensus/90% ......GCT......GA..TsGC..AAuG...uusG.TusCsT...TAG....TGTCsTssCsACsTTsuT.T....CAG consensus/80% ......GCT......GA..TsGC..AAuG...uusG.TusCsT...TAG....TGTCsTssCsACsTTsuT.T....CAG consensus/70% ......GCT......GA..TsGC..AAuG...uusG.TusCsT...TAG....TGTCsTssCsACsTTsuT.T....CAG cov pid 11201 . . . . : . . . 11280 1 2019nCoV 100.0% 100.0% ca----gctcggcaagg-gtttgttgattcagatgtagaaactaaagatgttgttga-----------atgtctta-aat 2 SARS 95.5% 77.9% ct----gcccgacaaggtgt-tgttgataccgatgttgacacaaaggatgttattga-----------atgtctca-aac 3 MERS 74.7% 47.2% cacgaggccccgc-agg----tgtggagtctgatgttgagaccaatgaaattgttgactctgtgcagtatg-ctcataa- consensus/100% Cs....GCsCsuC.AGG....TGTsGAssCsGATGTsGAsACsAAsGAsuTTuTTGA...........ATG.CTsA.AA. consensus/90% Cs....GCsCsuC.AGG....TGTsGAssCsGATGTsGAsACsAAsGAsuTTuTTGA...........ATG.CTsA.AA. consensus/80% Cs....GCsCsuC.AGG....TGTsGAssCsGATGTsGAsACsAAsGAsuTTuTTGA...........ATG.CTsA.AA. consensus/70% Cs....GCsCsuC.AGG....TGTsGAssCsGATGTsGAsACsAAsGAsuTTuTTGA...........ATG.CTsA.AA. cov pid 11281 . 3 . . . . : . 11360 1 2019nCoV 100.0% 100.0% tgtcacatcaatctgacatagaagttactggcgatagttgtaataactatatg----ctcacctataacaaagttgaaaa 2 SARS 95.5% 77.9% tttcacatcactctgacttagaagtgacaggtgacagttgtaacaatttcatg----ctcacctataataaggttgaaaa 3 MERS 74.7% 47.2% ----acat------gacatacaaattactaatgagagctacaataatt--atgtaccctca--tat------gtt--aaa consensus/100% ....ACAT......GACsTAsAAuTsACsuusGAsAGsTusAAsAAsT..ATG....CTCA..TAT......GTT..AAA consensus/90% ....ACAT......GACsTAsAAuTsACsuusGAsAGsTusAAsAAsT..ATG....CTCA..TAT......GTT..AAA consensus/80% ....ACAT......GACsTAsAAuTsACsuusGAsAGsTusAAsAAsT..ATG....CTCA..TAT......GTT..AAA consensus/70% ....ACAT......GACsTAsAAuTsACsuusGAsAGsTusAAsAAsT..ATG....CTCA..TAT......GTT..AAA cov pid 11361 . . . 4 . . . . 11440 1 2019nCoV 100.0% 100.0% catgaca------c--cccgtgaccttggtgcttgt---attgactgtagtgcgcgtcatattaatgcgcaggtag-caa 2 SARS 95.5% 77.9% catgacg------c--ccagagatcttggcgcatgt---attgactgtaatgcaaggcatatcaatgcccaagtag-caa 3 MERS 74.7% 47.2% cctgatagtgtgtctaccagcgatttaggta---gtctcattgattgtaatgc--ggctt---------cagttaaccaa consensus/100% CsTGAsu......C..CCsGsGAssTsGGsu...GT...ATTGAsTGTAuTGC..GsCsT.........CAusTAu.CAA consensus/90% CsTGAsu......C..CCsGsGAssTsGGsu...GT...ATTGAsTGTAuTGC..GsCsT.........CAusTAu.CAA consensus/80% CsTGAsu......C..CCsGsGAssTsGGsu...GT...ATTGAsTGTAuTGC..GsCsT.........CAusTAu.CAA consensus/70% CsTGAsu......C..CCsGsGAssTsGGsu...GT...ATTGAsTGTAuTGC..GsCsT.........CAusTAu.CAA cov pid 11441 : . . . . 5 . . 11520 1 2019nCoV 100.0% 100.0% a-----------aagtcacaacattgctt---tgatatggaacgttaaagatttcatgtcattgtctgaa---------- 2 SARS 95.5% 77.9% a-----------aagtcacaa---tgtttcactcatctggaatgtaaaagactacatgtctttatctgaa---------- 3 MERS 74.7% 47.2% attgtcttgcgtaattc-taatggtgctt---gcatttggaacgctg----ctgcat------atatgaaactctcggat consensus/100% A...........AAsTC.sAA...TGsTT...ssATsTGGAAsGssu....sTsCAT......uTsTGAA.......... consensus/90% A...........AAsTC.sAA...TGsTT...ssATsTGGAAsGssu....sTsCAT......uTsTGAA.......... consensus/80% A...........AAsTC.sAA...TGsTT...ssATsTGGAAsGssu....sTsCAT......uTsTGAA.......... consensus/70% A...........AAsTC.sAA...TGsTT...ssATsTGGAAsGssu....sTsCAT......uTsTGAA.......... cov pid 11521 . . : . . . . 6 11600 1 2019nCoV 100.0% 100.0% -caact---acgaaaacaaatacgtagtgc-tgctaaa-aagaataacttaccttttaagttgacatgtgcaactactag 2 SARS 95.5% 77.9% -cagct---gcgtaaacaaattcgtagtgc-tgccaag-aagaacaacataccttttagactaacttgtgctacaactag 3 MERS 74.7% 47.2% gca-cttaaacg---acagattcgcattgcatgcc--gtaagtgtaatttagctttccggttaac-----c--------- consensus/100% .CA.CT...uCG...ACAuATsCGsAsTGC.TGCs..u.AAGsusAAssTAsCTTTssuusTuAC.....C......... consensus/90% .CA.CT...uCG...ACAuATsCGsAsTGC.TGCs..u.AAGsusAAssTAsCTTTssuusTuAC.....C......... consensus/80% .CA.CT...uCG...ACAuATsCGsAsTGC.TGCs..u.AAGsusAAssTAsCTTTssuusTuAC.....C......... consensus/70% .CA.CT...uCG...ACAuATsCGsAsTGC.TGCs..u.AAGsusAAssTAsCTTTssuusTuAC.....C......... cov pid 11601 . . . . : . . . 11680 1 2019nCoV 100.0% 100.0% ac----aagtt----gttaatgttgtaacaacaa-----------agatagcact--taagggtggtaaaattgttaata 2 SARS 95.5% 77.9% ac----aggtt----gtcaatgtcataactacta-----------aaatctcact--caagggtggtaagattgttagta 3 MERS 74.7% 47.2% acctcaaagctacgcgctaatg--ataa----tatcttatcagttagat-tcactgctaa------caaaattgttggtg consensus/100% AC....AuGsT....GssAATG..uTAA....sA...........AuAT.sCACT..sAA......sAAuATTGTTuuTu consensus/90% AC....AuGsT....GssAATG..uTAA....sA...........AuAT.sCACT..sAA......sAAuATTGTTuuTu consensus/80% AC....AuGsT....GssAATG..uTAA....sA...........AuAT.sCACT..sAA......sAAuATTGTTuuTu consensus/70% AC....AuGsT....GssAATG..uTAA....sA...........AuAT.sCACT..sAA......sAAuATTGTTuuTu cov pid 11681 . 7 . . . . : . 11760 1 2019nCoV 100.0% 100.0% at---------tggttgaa-----------gcagtta--attaaag-------------ttac-act----tgtgttcct 2 SARS 95.5% 77.9% ct---------tgttttaa-----------ac--ttatgcttaagg-------------ccac-attattgtgcgttc-- 3 MERS 74.7% 47.2% gtgctcctacatggtttaatgcgttgcgtgac-tttacg-ttaaagggttatgttcttgctaccattat--tgtgtt--- consensus/100% sT.........TGsTTsAA...........uC..TTA...TTAAuG.............ssAC.AsT....TGsGTT... consensus/90% sT.........TGsTTsAA...........uC..TTA...TTAAuG.............ssAC.AsT....TGsGTT... consensus/80% sT.........TGsTTsAA...........uC..TTA...TTAAuG.............ssAC.AsT....TGsGTT... consensus/70% sT.........TGsTTsAA...........uC..TTA...TTAAuG.............ssAC.AsT....TGsGTT... cov pid 11761 . . . 8 . . . . 11840 1 2019nCoV 100.0% 100.0% ttttgt-tgctgctatt--ttctatttaataacacctgttcatgtcatgtctaaacat----------ac---------- 2 SARS 95.5% 77.9% -----t-tgctgc-attggtt-tgtt--atatc----gtt-atgcca-gt----acat----------acattgtcaatc 3 MERS 74.7% 47.2% -tctgtgtgctgt-actgatg-tattt-gt-------gtt--tacc---t----acattttctatggcac-ctgt----- consensus/100% .....T.TGCTGs.AsT..Ts.TuTT..uT.......GTT..TusC...T....ACAT..........AC.......... consensus/90% .....T.TGCTGs.AsT..Ts.TuTT..uT.......GTT..TusC...T....ACAT..........AC.......... consensus/80% .....T.TGCTGs.AsT..Ts.TuTT..uT.......GTT..TusC...T....ACAT..........AC.......... consensus/70% .....T.TGCTGs.AsT..Ts.TuTT..uT.......GTT..TusC...T....ACAT..........AC.......... cov pid 11841 : . . . . 9 . . 11920 1 2019nCoV 100.0% 100.0% --tgactt--tt---caagtgaa------atcataggatac---aaggctattgatggtggtgtcactcgtgacatagca 2 SARS 95.5% 77.9% catga--tggttacacaaatgaa------atcattggttac---aaagccattcaggatggtgtcactcgtgacat--ca 3 MERS 74.7% 47.2% --tgaatt--tt------atgaagaccgcatc-ttgg--actttaaagttcttgataatggtatcattagggatgta-aa consensus/100% ..TGA..T..TT......uTGAA......ATC.TsGG..AC...AAuGsssTTsAsuuTGGTuTCAsTsGsGAsuT..sA consensus/90% ..TGA..T..TT......uTGAA......ATC.TsGG..AC...AAuGsssTTsAsuuTGGTuTCAsTsGsGAsuT..sA consensus/80% ..TGA..T..TT......uTGAA......ATC.TsGG..AC...AAuGsssTTsAsuuTGGTuTCAsTsGsGAsuT..sA consensus/70% ..TGA..T..TT......uTGAA......ATC.TsGG..AC...AAuGsssTTsAsuuTGGTuTCAsTsGsGAsuT..sA cov pid 11921 . . : . . . . 0 12000 1 2019nCoV 100.0% 100.0% --tctacagatact---tgttttgctaacaaacatgctgatt-ttgacaca-tggt-tta-gccagcgtg---gtggtag 2 SARS 95.5% 77.9% tttctactgatgat---tgttttgcaaataaacatgctggtt-ttgacgca-tggt-tta-gccagcgtg---gtggt-- 3 MERS 74.7% 47.2% --tc--ctgatgataagtgctttgctaataagca--ccggtccttcacacaatggtatcatg--agcatgttggtggt-g consensus/100% ..TC..CsGATusT...TGsTTTGCsAAsAAuCA..CsGuTs.TTsACuCA.TGGT.TsA.G..AGCuTG...GTGGT.. consensus/90% ..TC..CsGATusT...TGsTTTGCsAAsAAuCA..CsGuTs.TTsACuCA.TGGT.TsA.G..AGCuTG...GTGGT.. consensus/80% ..TC..CsGATusT...TGsTTTGCsAAsAAuCA..CsGuTs.TTsACuCA.TGGT.TsA.G..AGCuTG...GTGGT.. consensus/70% ..TC..CsGATusT...TGsTTTGCsAAsAAuCA..CsGuTs.TTsACuCA.TGGT.TsA.G..AGCuTG...GTGGT.. cov pid 12001 . . . . : . . . 12080 1 2019nCoV 100.0% 100.0% ttatac--taatgacaa---------a-gcttgcccattg--attgctgcagtcataacaagagaagtgggt-------t 2 SARS 95.5% 77.9% tcatacaaaaatgacaa---------aagc-tgccc--tgtagtagctgctatcattacaagagagattggt-------t 3 MERS 74.7% 47.2% tc-ta------tgacaactctatcaca----tgcccattg--acagttgcagtaattgctggagttgctggtgctcgcat consensus/100% Ts.TA......TGACAA.........A....TGCCC..TG..ussGsTGCsuTsATsuCsuGAGssussGGT.......T consensus/90% Ts.TA......TGACAA.........A....TGCCC..TG..ussGsTGCsuTsATsuCsuGAGssussGGT.......T consensus/80% Ts.TA......TGACAA.........A....TGCCC..TG..ussGsTGCsuTsATsuCsuGAGssussGGT.......T consensus/70% Ts.TA......TGACAA.........A....TGCCC..TG..ussGsTGCsuTsATsuCsuGAGssussGGT.......T cov pid 12081 . 1 . . . . : . 12160 1 2019nCoV 100.0% 100.0% tt--gtcgtgcct--------ggtttgcctggcacgatattacgc-----acaactaatggtgacttt--ttgcatttct 2 SARS 95.5% 77.9% tc--atagtgcct--------ggcttaccgggtac-----tgtgctgagagcaatcaatggtgacttc--ttgcattttc 3 MERS 74.7% 47.2% tccagacgtacctactacattggcttg---ggt---------------gaacaatca--gataattttctttg--ttt-- consensus/100% Ts..ussGTuCCT........GGsTTu...GGs.................uCAAssA..GuTuAsTTs..TTG..TTT.. consensus/90% Ts..ussGTuCCT........GGsTTu...GGs.................uCAAssA..GuTuAsTTs..TTG..TTT.. consensus/80% Ts..ussGTuCCT........GGsTTu...GGs.................uCAAssA..GuTuAsTTs..TTG..TTT.. consensus/70% Ts..ussGTuCCT........GGsTTu...GGs.................uCAAssA..GuTuAsTTs..TTG..TTT.. cov pid 12161 . . . 2 . . . . 12240 1 2019nCoV 100.0% 100.0% tacctagagttttt---agtgcagttggtaacatctgttacac---------------accatcaaaacttata-gagt- 2 SARS 95.5% 77.9% tacctcgtgttttt---agtgctgttggcaacatttgctacac---------------accttccaaactcatt-gagt- 3 MERS 74.7% 47.2% ---ctcgagtctttgctaataca---ggcagtgtttgctacactcctatagatgagatacc-------ct-ataagagtt consensus/100% ...CTsGsGTsTTT...AuTuCs...GGsAusuTsTGsTACAC...............ACC.......CT.ATs.GAGT. consensus/90% ...CTsGsGTsTTT...AuTuCs...GGsAusuTsTGsTACAC...............ACC.......CT.ATs.GAGT. consensus/80% ...CTsGsGTsTTT...AuTuCs...GGsAusuTsTGsTACAC...............ACC.......CT.ATs.GAGT. consensus/70% ...CTsGsGTsTTT...AuTuCs...GGsAusuTsTGsTACAC...............ACC.......CT.ATs.GAGT. cov pid 12241 : . . . . 3 . . 12320 1 2019nCoV 100.0% 100.0% ------acactgactttgcaacatcagcttgtgttttggc-tgctgaatgtacaatttttaaagatgcttctggtaa--- 2 SARS 95.5% 77.9% ------atagtgattttgctacctctgcttgcgttcttgc-tgctgagtgtacaatttttaaggatgctatgggcaa--- 3 MERS 74.7% 47.2% tctctgatagtgg---------------ttgcattcttccat-ctgagtgcactatgtttagggatgc--------agag consensus/100% ......AsAsTGu...............TTGsuTTsTssC.T.CTGAuTGsACsATsTTTAuuGATGC........A... consensus/90% ......AsAsTGu...............TTGsuTTsTssC.T.CTGAuTGsACsATsTTTAuuGATGC........A... consensus/80% ......AsAsTGu...............TTGsuTTsTssC.T.CTGAuTGsACsATsTTTAuuGATGC........A... consensus/70% ......AsAsTGu...............TTGsuTTsTssC.T.CTGAuTGsACsATsTTTAuuGATGC........A... cov pid 12321 . . : . . . . 4 12400 1 2019nCoV 100.0% 100.0% -gccagta-----ccatattgttatgat---accaatgtactagaaggttctgttgcttatgaaagt----ttacgccct 2 SARS 95.5% 77.9% -acctgtg-----ccatattgttatgac---actaatttgctagagggttctatttcttat---agtgagctt-cgtcca 3 MERS 74.7% 47.2% ggcc-gtatgacaccatactgccatgatcctactgttttgcctgggg---cttttgcgtac---agt-----------ca consensus/100% .uCC.GTu.....CCATAsTGssATGAs...ACsusTsTuCssGuuG...CTsTTsCsTAs...AGT...........Cs consensus/90% .uCC.GTu.....CCATAsTGssATGAs...ACsusTsTuCssGuuG...CTsTTsCsTAs...AGT...........Cs consensus/80% .uCC.GTu.....CCATAsTGssATGAs...ACsusTsTuCssGuuG...CTsTTsCsTAs...AGT...........Cs consensus/70% .uCC.GTu.....CCATAsTGssATGAs...ACsusTsTuCssGuuG...CTsTTsCsTAs...AGT...........Cs cov pid 12401 . . . . : . . . 12480 1 2019nCoV 100.0% 100.0% ga--------cac--acgttatg---tgctcatggatggc------tctattattcaatttccta--------------- 2 SARS 95.5% 77.9% ga--------cac--tcgttatg---tgcttatggatggt------tccatcatacagtttccta--------------- 3 MERS 74.7% 47.2% gatgaggcctcatgttcgttacgacttg--tatg-atggtaacatgtttatta---aatttcctgaagtagtatttgaaa consensus/100% GA........CAs..sCGTTAsG...TG..sATG.ATGGs......TssATsA...AuTTTCCTu............... consensus/90% GA........CAs..sCGTTAsG...TG..sATG.ATGGs......TssATsA...AuTTTCCTu............... consensus/80% GA........CAs..sCGTTAsG...TG..sATG.ATGGs......TssATsA...AuTTTCCTu............... consensus/70% GA........CAs..sCGTTAsG...TG..sATG.ATGGs......TssATsA...AuTTTCCTu............... cov pid 12481 . 5 . . . . : . 12560 1 2019nCoV 100.0% 100.0% --acaccta-----ccttgaaggttctgttagagtggtaacaacttttgattctgagtactgtaggcacggcacttgtga 2 SARS 95.5% 77.9% --acactta-----cctggagggttctgttagagtagtaacaacttttgatgctgagtactgtagacatggtacatgcga 3 MERS 74.7% 47.2% gtacacttaggattactagaa--ctctgt-----------caactc---------agtactgccggttcggtagttgtga consensus/100% ..ACACsTA.....sCTsGAu..sTCTGT...........CAACTs.........AGTACTGssGusssGGsAssTGsGA consensus/90% ..ACACsTA.....sCTsGAu..sTCTGT...........CAACTs.........AGTACTGssGusssGGsAssTGsGA consensus/80% ..ACACsTA.....sCTsGAu..sTCTGT...........CAACTs.........AGTACTGssGusssGGsAssTGsGA consensus/70% ..ACACsTA.....sCTsGAu..sTCTGT...........CAACTs.........AGTACTGssGusssGGsAssTGsGA cov pid 12561 . . . 6 . . . . 12640 1 2019nCoV 100.0% 100.0% --------aagatcagaagctggtgtttgtgtatctact---agtgg-tagatggg---tacttaacaatgatta----- 2 SARS 95.5% 77.9% --------aaggtcagaagtaggtatttgcctatctacc---agtgg-tagatggg---ttcttaataatgagca----- 3 MERS 74.7% 47.2% gtatgcacaag------ag--ggtgtttg--tat-taccacaaatggctcg-tgggccatttttaa---tgaccaccatc consensus/100% ........AAG......AG..GGTuTTTG..TAT.TACs...AuTGG.TsG.TGGG...TssTTAA...TGAssA..... consensus/90% ........AAG......AG..GGTuTTTG..TAT.TACs...AuTGG.TsG.TGGG...TssTTAA...TGAssA..... consensus/80% ........AAG......AG..GGTuTTTG..TAT.TACs...AuTGG.TsG.TGGG...TssTTAA...TGAssA..... consensus/70% ........AAG......AG..GGTuTTTG..TAT.TACs...AuTGG.TsG.TGGG...TssTTAA...TGAssA..... cov pid 12641 : . . . . 7 . . 12720 1 2019nCoV 100.0% 100.0% tta-cagatctttaccaggagttttctgtggtgtagatgctgtaaatttactta---ctaatat---------gtt---- 2 SARS 95.5% 77.9% tta-cagagctctatcaggagttttctgtggtgttgatgcgatgaat---ctcatagctaacat---------ctt---- 3 MERS 74.7% 47.2% ttaatagacct------ggtgtctattgtggctctgat------------ttta---ttgacattgtcaggcggttagca consensus/100% TTA.sAGAsCT......GGsGTsTssTGTGGssssGAT............sTsA...sTuAsAT.........sTT.... consensus/90% TTA.sAGAsCT......GGsGTsTssTGTGGssssGAT............sTsA...sTuAsAT.........sTT.... consensus/80% TTA.sAGAsCT......GGsGTsTssTGTGGssssGAT............sTsA...sTuAsAT.........sTT.... consensus/70% TTA.sAGAsCT......GGsGTsTssTGTGGssssGAT............sTsA...sTuAsAT.........sTT.... cov pid 12721 . . : . . . . 8 12800 1 2019nCoV 100.0% 100.0% -tacaccactaattcaacctattggtgctttggacatatcagcatctatagtagct--------ggt----ggtat---- 2 SARS 95.5% 77.9% -tactcctcttgtgcaacctgtgggtgctttagatgtgtctgcttcagtagtggct--------ggt----ggtat---- 3 MERS 74.7% 47.2% gta--tcactgttccagcctat---tactt-----atttc-----caat--tgactacctcattggtcttgggtataggt consensus/100% .TA..sCsCTssTsCAuCCTuT...TuCTT.....uTsTC.....CsuT..TuuCT........GGT....GGTAT.... consensus/90% .TA..sCsCTssTsCAuCCTuT...TuCTT.....uTsTC.....CsuT..TuuCT........GGT....GGTAT.... consensus/80% .TA..sCsCTssTsCAuCCTuT...TuCTT.....uTsTC.....CsuT..TuuCT........GGT....GGTAT.... consensus/70% .TA..sCsCTssTsCAuCCTuT...TuCTT.....uTsTC.....CsuT..TuuCT........GGT....GGTAT.... cov pid 12801 . . . . : . . . 12880 1 2019nCoV 100.0% 100.0% ---tgtagc--tatcgtag----taac--atgccttgc----ctactat-tttatgaggtttagaagagcttttggtgaa 2 SARS 95.5% 77.9% ---tattgccatattg--g----tgacttgtgc--tgc----ctactac-tttatgaaattcagacgtgtttttggtgag 3 MERS 74.7% 47.2% ttgtgt-gc---------gttcctgact------ttgctcttctattatattaataaag-taaaacgtgcttttgcagat consensus/100% ...TuT.GC.........G....TuAC........TGC....CTAsTAs.TTsATuAuu.TsAuAsGsGsTTTTGssGAs consensus/90% ...TuT.GC.........G....TuAC........TGC....CTAsTAs.TTsATuAuu.TsAuAsGsGsTTTTGssGAs consensus/80% ...TuT.GC.........G....TuAC........TGC....CTAsTAs.TTsATuAuu.TsAuAsGsGsTTTTGssGAs consensus/70% ...TuT.GC.........G....TuAC........TGC....CTAsTAs.TTsATuAuu.TsAuAsGsGsTTTTGssGAs cov pid 12881 . 9 . . . . : . 12960 1 2019nCoV 100.0% 100.0% tacagtca---------------tgtagttgcctttaat--actttactattcctta-----tgt-------catt---- 2 SARS 95.5% 77.9% tacaacca---------------tgttgttgctgctaatgcacttt--tgtttttga-----tgt-------cttt---- 3 MERS 74.7% 47.2% tacacccagtgtgctgtaattgctgttgttgctgc-------------tgttcttaatagcttgtgcatctgctttgtta consensus/100% TACAssCA...............TGTsGTTGCsss.............TuTTssTsA.....TGT.......CsTT.... consensus/90% TACAssCA...............TGTsGTTGCsss.............TuTTssTsA.....TGT.......CsTT.... consensus/80% TACAssCA...............TGTsGTTGCsss.............TuTTssTsA.....TGT.......CsTT.... consensus/70% TACAssCA...............TGTsGTTGCsss.............TuTTssTsA.....TGT.......CsTT.... cov pid 12961 . . . 0 . . . . 13040 1 2019nCoV 100.0% 100.0% -cactgtac---tctgtttaacaccagtttactca--ttcttacctggtgtttattctgttatttacttgtact----tg 2 SARS 95.5% 77.9% -cactatac---tctgtctggtaccagctta--cagctttctgccgggagtctactcagtcttttacttgtact----tg 3 MERS 74.7% 47.2% cctctataccattgtgtatagtacc---tta--ca-----ctgc---------a-------------ttgtactattatg consensus/100% .CsCTuTAC...TsTGTsTuusACC...TTA..CA.....sTuC.........A.............TTGTACT....TG consensus/90% .CsCTuTAC...TsTGTsTuusACC...TTA..CA.....sTuC.........A.............TTGTACT....TG consensus/80% .CsCTuTAC...TsTGTsTuusACC...TTA..CA.....sTuC.........A.............TTGTACT....TG consensus/70% .CsCTuTAC...TsTGTsTuusACC...TTA..CA.....sTuC.........A.............TTGTACT....TG cov pid 13041 : . . . . 1 . . 13120 1 2019nCoV 100.0% 100.0% --acattttatcttactaatga------------------tgtttcttttttagcacatattcagtggatggtt----at 2 SARS 95.5% 77.9% --acattctatttcaccaatga------------------tgtttcattcttggctcaccttca----atggtttgccat 3 MERS 74.7% 47.2% ctacattctattttactaatgagcctgcatttattatgcatgtttc----ttggtaca--------------tt----at consensus/100% ..ACATTsTATsTsACsAATGA..................TGTTTC....TTuGssCA..............TT....AT consensus/90% ..ACATTsTATsTsACsAATGA..................TGTTTC....TTuGssCA..............TT....AT consensus/80% ..ACATTsTATsTsACsAATGA..................TGTTTC....TTuGssCA..............TT....AT consensus/70% ..ACATTsTATsTsACsAATGA..................TGTTTC....TTuGssCA..............TT....AT cov pid 13121 . . : . . . . 2 13200 1 2019nCoV 100.0% 100.0% gttcacacct-ttagtacctttctggataacaattgc---ttatatcatt-tgta------tttccacaaagcatttcta 2 SARS 95.5% 77.9% gttttctcctatt-gtgcctttttggataaca---gcaatctatgt-attctgta------tttctctgaagcactgcca 3 MERS 74.7% 47.2% gttcgggcctatc-gttcccatatggatgac--ctgc-gtctatac-agt-tgcaatgtgcttt-----agacacttctt consensus/100% GTTssssCCT.Ts.GTsCCssTsTGGATuAC....GC...sTATus.AsT.TGsA......TTT.....AuuCAsTsCss consensus/90% GTTssssCCT.Ts.GTsCCssTsTGGATuAC....GC...sTATus.AsT.TGsA......TTT.....AuuCAsTsCss consensus/80% GTTssssCCT.Ts.GTsCCssTsTGGATuAC....GC...sTATus.AsT.TGsA......TTT.....AuuCAsTsCss consensus/70% GTTssssCCT.Ts.GTsCCssTsTGGATuAC....GC...sTATus.AsT.TGsA......TTT.....AuuCAsTsCss cov pid 13201 . . . . : . . . 13280 1 2019nCoV 100.0% 100.0% ttggttctttagtaattacct-----aaagagacgtgtag---tcttta---atggt--gtttcctt-tagtacttttga 2 SARS 95.5% 77.9% ttggttctttaacaactatcttaggaaaagagtcatg--------ttta---atgga--gttacatt-tagtaccttcga 3 MERS 74.7% 47.2% ctgggt-tttagc--ttattttagt--aagaaacatgtagaagtttttactgatggtaagcttaattgtagt---ttcca consensus/100% sTGGsT.TTTAus..sTAssT......AAGAusCuTG........TTTA...ATGGs..GsTsssTT.TAGT...TTssA consensus/90% sTGGsT.TTTAus..sTAssT......AAGAusCuTG........TTTA...ATGGs..GsTsssTT.TAGT...TTssA consensus/80% sTGGsT.TTTAus..sTAssT......AAGAusCuTG........TTTA...ATGGs..GsTsssTT.TAGT...TTssA consensus/70% sTGGsT.TTTAus..sTAssT......AAGAusCuTG........TTTA...ATGGs..GsTsssTT.TAGT...TTssA cov pid 13281 . 3 . . . . : . 13360 1 2019nCoV 100.0% 100.0% agaagctgcgctgtg-caccttt-ttgttaaataaagaaatgtatctaaagttgcgtagtgatgtgctattacctcttac 2 SARS 95.5% 77.9% ggaggctgctttgtg-taccttt-ttgctcaacaaggaaatgtacctaaaattgcgtagcgagacactgttgccacttac 3 MERS 74.7% 47.2% ggacgctgc-ctctaatatctttgttatt-aacaagga-----------------------------------cacttat consensus/100% uGAsGCTGC.sTsTu.sAsCTTT.TTusT.AAsAAuGA...................................CsCTTAs consensus/90% uGAsGCTGC.sTsTu.sAsCTTT.TTusT.AAsAAuGA...................................CsCTTAs consensus/80% uGAsGCTGC.sTsTu.sAsCTTT.TTusT.AAsAAuGA...................................CsCTTAs consensus/70% uGAsGCTGC.sTsTu.sAsCTTT.TTusT.AAsAAuGA...................................CsCTTAs cov pid 13361 . . . 4 . . . . 13440 1 2019nCoV 100.0% 100.0% gcaa-tataatagata-cttag---ctcttta-----------------------------------taataagtacaag 2 SARS 95.5% 77.9% acag-tataacaggtatctt-g---ctctata-----------------------------------taacaagtacaag 3 MERS 74.7% 47.2% gcagct-----------cttagaaactctttaactaatgatgcctattcacgatttttggggttgtttaacaagtataag consensus/100% uCAu.T...........CTT.G...CTCTsTA...................................TAAsAAGTAsAAG consensus/90% uCAu.T...........CTT.G...CTCTsTA...................................TAAsAAGTAsAAG consensus/80% uCAu.T...........CTT.G...CTCTsTA...................................TAAsAAGTAsAAG consensus/70% uCAu.T...........CTT.G...CTCTsTA...................................TAAsAAGTAsAAG cov pid 13441 : . . . . 5 . . 13520 1 2019nCoV 100.0% 100.0% tattttagtggagcaatggatacaactagct-acagagaagctgcttgt----tgtcatctcgcaaaggctctcaatgac 2 SARS 95.5% 77.9% tatttcagtggagccttagatactaccagct-atcgtgaagcagcttgc----tgccacttagcaaaggctctaaatgac 3 MERS 74.7% 47.2% tacttctctggtgctatggaaacagcc-gcttatcgtgaagc----tgcagcatgtcatcttgctaaagc---------c consensus/100% TAsTTsssTGGsGCssTuGAsACsuCs.GCT.AssGsGAAGC....TGs....TGsCAssTsGCsAAuGC.........C consensus/90% TAsTTsssTGGsGCssTuGAsACsuCs.GCT.AssGsGAAGC....TGs....TGsCAssTsGCsAAuGC.........C consensus/80% TAsTTsssTGGsGCssTuGAsACsuCs.GCT.AssGsGAAGC....TGs....TGsCAssTsGCsAAuGC.........C consensus/70% TAsTTsssTGGsGCssTuGAsACsuCs.GCT.AssGsGAAGC....TGs....TGsCAssTsGCsAAuGC.........C cov pid 13521 . . : . . . . 6 13600 1 2019nCoV 100.0% 100.0% tt---------cagtaa--ctcaggttctgatgttctttaccaaccaccacaaacctct-----atcacctcagctgttt 2 SARS 95.5% 77.9% tt---------tagcaa--ctcaggtgctgatgttctctaccaaccaccacagacatca-----atcacttctgctgttc 3 MERS 74.7% 47.2% ttacaaacatacagcgagact--ggtagtgatcttctttaccaaccacc-caa----ctgtagcataacctctggcgtgt consensus/100% TT.........sAGsuA..CT..GGTssTGATsTTCTsTACCAACCACC.CAu....Cs.....ATsACsTCsGssGTss consensus/90% TT.........sAGsuA..CT..GGTssTGATsTTCTsTACCAACCACC.CAu....Cs.....ATsACsTCsGssGTss consensus/80% TT.........sAGsuA..CT..GGTssTGATsTTCTsTACCAACCACC.CAu....Cs.....ATsACsTCsGssGTss consensus/70% TT.........sAGsuA..CT..GGTssTGATsTTCTsTACCAACCACC.CAu....Cs.....ATsACsTCsGssGTss cov pid 13601 . . . . : . . . 13680 1 2019nCoV 100.0% 100.0% tgcagagtggttttaga--aaaatg--gcattcccatctggtaaa-gttgagggttgtatggtacaagtaacttgtgg-- 2 SARS 95.5% 77.9% tgcagagtggttttagg--aaaatg--gcattcccgtcaggcaaa-gttgaagggtgcatggtacaagtaacctgtggaa 3 MERS 74.7% 47.2% tgcaaagcggttt--ggtgaaaatgtcacatcccagt--gg-agatgttgaggcttgtatggttcaggttacctgcgg-- consensus/100% TGCAuAGsGGTTT..Gu..AAAATG..uCATsCCsuT..GG.AuA.GTTGAuGssTGsATGGTsCAuGTsACsTGsGG.. consensus/90% TGCAuAGsGGTTT..Gu..AAAATG..uCATsCCsuT..GG.AuA.GTTGAuGssTGsATGGTsCAuGTsACsTGsGG.. consensus/80% TGCAuAGsGGTTT..Gu..AAAATG..uCATsCCsuT..GG.AuA.GTTGAuGssTGsATGGTsCAuGTsACsTGsGG.. consensus/70% TGCAuAGsGGTTT..Gu..AAAATG..uCATsCCsuT..GG.AuA.GTTGAuGssTGsATGGTsCAuGTsACsTGsGG.. cov pid 13681 . 7 . . . . : . 13760 1 2019nCoV 100.0% 100.0% -ta-ca--actacacttaacggtctttggcttgatgacgtagtttactgtccaagacatgtgatctgcacctctgaagac 2 SARS 95.5% 77.9% cta-ca--act---cttaatggattgtggttggatgacacagtatactgtccaagacatgtcatttgcacagcagaagac 3 MERS 74.7% 47.2% -tagcatgact---cttaatggtctttggcttgacaacacagtctggtgcccacgacacgtaatgtgcccggctgac--c consensus/100% .TA.CA..ACT...CTTAAsGGssTsTGGsTsGAsuACusAGTsTusTGsCCAsGACAsGTsATsTGCsCssCsGAs..C consensus/90% .TA.CA..ACT...CTTAAsGGssTsTGGsTsGAsuACusAGTsTusTGsCCAsGACAsGTsATsTGCsCssCsGAs..C consensus/80% .TA.CA..ACT...CTTAAsGGssTsTGGsTsGAsuACusAGTsTusTGsCCAsGACAsGTsATsTGCsCssCsGAs..C consensus/70% .TA.CA..ACT...CTTAAsGGssTsTGGsTsGAsuACusAGTsTusTGsCCAsGACAsGTsATsTGCsCssCsGAs..C cov pid 13761 . . . 8 . . . . 13840 1 2019nCoV 100.0% 100.0% a--tgcttaaccctaattatgaagatttactcattcgtaagtctaatcataa-tttcttggtacag---gc--------- 2 SARS 95.5% 77.9% a--tgcttaatcctaactatgaagatctgctcattcgcaaatccaaccatagctttcttgtt-cag---gc--------- 3 MERS 74.7% 47.2% agttgtctgatcctaattatgatgccttgttgatttctatgactaatcatag-ttt-------cagtgtgcaaaaacaca consensus/100% A..TGssTuAsCCTAAsTATGAsGsssTusTsATTsssAsusCsAAsCATAu.TTT.......CAG...GC......... consensus/90% A..TGssTuAsCCTAAsTATGAsGsssTusTsATTsssAsusCsAAsCATAu.TTT.......CAG...GC......... consensus/80% A..TGssTuAsCCTAAsTATGAsGsssTusTsATTsssAsusCsAAsCATAu.TTT.......CAG...GC......... consensus/70% A..TGssTuAsCCTAAsTATGAsGsssTusTsATTsssAsusCsAAsCATAu.TTT.......CAG...GC......... cov pid 13841 : . . . . 9 . . 13920 1 2019nCoV 100.0% 100.0% -tggtaatgttc-----aactc-agggttattggacattctatgcaaa--attgtgtacttaagcttaaggttg------ 2 SARS 95.5% 77.9% -tggcaatgttc-----aactt-cgtgttattggccattctatgcaaa--attgtctgcttaggcttaaagttg------ 3 MERS 74.7% 47.2% ttggc---gctccagcaaacttgcgtgttgttggtcatgccatgcaaggcact-----ctt----ttgaagttgactgtc consensus/100% .TGGs...GsTC.....AACTs.sGsGTTuTTGGsCATsCsATGCAAu..AsT.....CTT....TTuAuGTTG...... consensus/90% .TGGs...GsTC.....AACTs.sGsGTTuTTGGsCATsCsATGCAAu..AsT.....CTT....TTuAuGTTG...... consensus/80% .TGGs...GsTC.....AACTs.sGsGTTuTTGGsCATsCsATGCAAu..AsT.....CTT....TTuAuGTTG...... consensus/70% .TGGs...GsTC.....AACTs.sGsGTTuTTGGsCATsCsATGCAAu..AsT.....CTT....TTuAuGTTG...... cov pid 13921 . . : . . . . 0 14000 1 2019nCoV 100.0% 100.0% -atacagccaatcctaagacacctaag----------tataagtttgttcgcattc-----aaccagga-cagactttt- 2 SARS 95.5% 77.9% -atacttctaaccctaagacacccaag----------tataaatttgtccgtatcc-----aacctggt-caaacattt- 3 MERS 74.7% 47.2% gatgttgctaacccta--gcactccagcctacacttttacaa-------------cagtgaaacctggcgcag-cattta consensus/100% .ATusssCsAAsCCTA..uCACsssAG..........TAsAA.............C.....AACCsGGs.CAu.CsTTT. consensus/90% .ATusssCsAAsCCTA..uCACsssAG..........TAsAA.............C.....AACCsGGs.CAu.CsTTT. consensus/80% .ATusssCsAAsCCTA..uCACsssAG..........TAsAA.............C.....AACCsGGs.CAu.CsTTT. consensus/70% .ATusssCsAAsCCTA..uCACsssAG..........TAsAA.............C.....AACCsGGs.CAu.CsTTT. cov pid 14001 . . . . : . . . 14080 1 2019nCoV 100.0% 100.0% -tcagtgttagcttgttacaatggt--tc--ac-----cat---ctggtgtttaccaatgtgctatgaggcccaatttca 2 SARS 95.5% 77.9% -tcagttctagcatgctacaatggt--tc--ac-----cat---ctggtgtttatcagtgtgccatgagacctaatcata 3 MERS 74.7% 47.2% gt--gtgttagcatgctataatggtcgtccgactggtacattcactgttgt-----aatgcgc-------cctaactaca consensus/100% .T..GTssTAGCsTGsTAsAATGGT..TC..AC.....CAT...CTGsTGT.....AuTGsGC.......CCsAAssssA consensus/90% .T..GTssTAGCsTGsTAsAATGGT..TC..AC.....CAT...CTGsTGT.....AuTGsGC.......CCsAAssssA consensus/80% .T..GTssTAGCsTGsTAsAATGGT..TC..AC.....CAT...CTGsTGT.....AuTGsGC.......CCsAAssssA consensus/70% .T..GTssTAGCsTGsTAsAATGGT..TC..AC.....CAT...CTGsTGT.....AuTGsGC.......CCsAAssssA cov pid 14081 . 1 . . . . : . 14160 1 2019nCoV 100.0% 100.0% ctattaagggttcattcct-taatggttcatgtggtagtgttggttttaaca----------tagattatgactgtgtct 2 SARS 95.5% 77.9% ccattaaaggttctttcct-taatggatcatgtggtagtgttggttttaaca----------ttgattatgattgcgtgt 3 MERS 74.7% 47.2% caattaagggttcctttctgtg-tggttcttgtggtagtgttggtt---acaccaaggagggtag--tgtga-------t consensus/100% CsATTAAuGGTTCsTTsCT.Tu.TGGsTCsTGTGGTAGTGTTGGTT...ACA..........TsG..TuTGA.......T consensus/90% CsATTAAuGGTTCsTTsCT.Tu.TGGsTCsTGTGGTAGTGTTGGTT...ACA..........TsG..TuTGA.......T consensus/80% CsATTAAuGGTTCsTTsCT.Tu.TGGsTCsTGTGGTAGTGTTGGTT...ACA..........TsG..TuTGA.......T consensus/70% CsATTAAuGGTTCsTTsCT.Tu.TGGsTCsTGTGGTAGTGTTGGTT...ACA..........TsG..TuTGA.......T cov pid 14161 . . . 2 . . . . 14240 1 2019nCoV 100.0% 100.0% c--tttttgttacatgcaccatatggaatta-ccaactggagttcatgctggcacag-acttagaaggta--acttttat 2 SARS 95.5% 77.9% c--tttctgctatatgcatcatatggagctt-ccaacaggagtacacgctggtactg-acttagaaggta--aattctat 3 MERS 74.7% 47.2% caatttctgttacatgcatcaaatggaacttgctaa-tggtacacataccggttcagcattt-gatggtacta--tgtat consensus/100% C..TTTsTGsTAsATGCAsCAsATGGAusTs.CsAA.sGGsussCAsuCsGGssCsG.AsTT.GAsGGTA..A..TsTAT consensus/90% C..TTTsTGsTAsATGCAsCAsATGGAusTs.CsAA.sGGsussCAsuCsGGssCsG.AsTT.GAsGGTA..A..TsTAT consensus/80% C..TTTsTGsTAsATGCAsCAsATGGAusTs.CsAA.sGGsussCAsuCsGGssCsG.AsTT.GAsGGTA..A..TsTAT consensus/70% C..TTTsTGsTAsATGCAsCAsATGGAusTs.CsAA.sGGsussCAsuCsGGssCsG.AsTT.GAsGGTA..A..TsTAT cov pid 14241 : . . . . 3 . . 14320 1 2019nCoV 100.0% 100.0% ggaccttttgttgacaggcaaacagcacaagcagctggt-------acggacacaactattacagt--t-aatgttttag 2 SARS 95.5% 77.9% ggtccatttgttgacagacaaactgcacaggctgcaggt-------acagacacaaccataaca-t--taaatgttttgg 3 MERS 74.7% 47.2% ggtgcctttatggataaacaag-tgcac------caagttcagttaacagaca-aa-tactgcagtgtt-aatgtagtag consensus/100% GGssCsTTTuTsGAsAuuCAAu.sGCAC......CsuGT.......ACuGACA.AA.sAssuCA.T..T.AATGTssTuG consensus/90% GGssCsTTTuTsGAsAuuCAAu.sGCAC......CsuGT.......ACuGACA.AA.sAssuCA.T..T.AATGTssTuG consensus/80% GGssCsTTTuTsGAsAuuCAAu.sGCAC......CsuGT.......ACuGACA.AA.sAssuCA.T..T.AATGTssTuG consensus/70% GGssCsTTTuTsGAsAuuCAAu.sGCAC......CsuGT.......ACuGACA.AA.sAssuCA.T..T.AATGTssTuG cov pid 14321 . . : . . . . 4 14400 1 2019nCoV 100.0% 100.0% cttggttgtacgctgctgtta----taaatgga---gacaggtggttt------ctcaatcgatttaccacaa------- 2 SARS 95.5% 77.9% catggctgtatgctgctgtta----tcaatggt---gataggtggttt------cttaatagattcaccacta------- 3 MERS 74.7% 47.2% cttggctttacgcagc----aatacttaatggttgcgct---tggtttgtaaaacctaatcg------cactagtgttgt consensus/100% CsTGGsTsTAsGCsGC....A....TsAATGGs...Gss...TGGTTT......CssAATsG......CACsA....... consensus/90% CsTGGsTsTAsGCsGC....A....TsAATGGs...Gss...TGGTTT......CssAATsG......CACsA....... consensus/80% CsTGGsTsTAsGCsGC....A....TsAATGGs...Gss...TGGTTT......CssAATsG......CACsA....... consensus/70% CsTGGsTsTAsGCsGC....A....TsAATGGs...Gss...TGGTTT......CssAATsG......CACsA....... cov pid 14401 . . . . : . . . 14480 1 2019nCoV 100.0% 100.0% --ctcttaatga-----ctttaaccttgtggctatgaagtacaatta------tgaacct-ctaacacaagacca---tg 2 SARS 95.5% 77.9% --ctttgaatga-----ctttaaccttgtggcaatgaagtacaacta------tgaacct-ttgacacaagatca---tg 3 MERS 74.7% 47.2% ttcttttaatgaatgggct-----cttgc------------caaccaattcactgaatttgttggcac----tcaatccg consensus/100% ..CTsTsAATGA.....CT.....CTTGs............CAAssA......TGAAssT.sTuuCAC....sCA...sG consensus/90% ..CTsTsAATGA.....CT.....CTTGs............CAAssA......TGAAssT.sTuuCAC....sCA...sG consensus/80% ..CTsTsAATGA.....CT.....CTTGs............CAAssA......TGAAssT.sTuuCAC....sCA...sG consensus/70% ..CTsTsAATGA.....CT.....CTTGs............CAAssA......TGAAssT.sTuuCAC....sCA...sG cov pid 14481 . 5 . . . . : . 14560 1 2019nCoV 100.0% 100.0% ttgacatactaggacctctttctgctc-aaactggaattgccgttttagatatgtgtgcttcattaaaagaattactgca 2 SARS 95.5% 77.9% ttgacatattgggacctctttctgctc-aaacaggaattgccgtcttagatatgtgtgctgctttgaaagagctgctgca 3 MERS 74.7% 47.2% ttgacatgttag---------ctg-tcaaaacaggcgttgc--tattgaaca-----gctgcttta----------tgcg consensus/100% TTGACATusTuG.........CTG.TC.AAACsGGsuTTGC..TsTTuuAsA.....GCTsCsTTu..........TGCu consensus/90% TTGACATusTuG.........CTG.TC.AAACsGGsuTTGC..TsTTuuAsA.....GCTsCsTTu..........TGCu consensus/80% TTGACATusTuG.........CTG.TC.AAACsGGsuTTGC..TsTTuuAsA.....GCTsCsTTu..........TGCu consensus/70% TTGACATusTuG.........CTG.TC.AAACsGGsuTTGC..TsTTuuAsA.....GCTsCsTTu..........TGCu cov pid 14561 . . . 6 . . . . 14640 1 2019nCoV 100.0% 100.0% a------aatggtatgaatggacgtacca-----------tattgggtagtgct-ttattagaagatgaatttacacctt 2 SARS 95.5% 77.9% g------aatggtatgaatggtcgtacta-----------tccttggtagcactatt-ttagaagatgagtttacaccat 3 MERS 74.7% 47.2% atccaacaactgtat-actgg--gttccagggaaagcaaatccttggcagtaccatg-ttggaagatgaattcacacc-- consensus/100% u......AAssGTAT.AsTGG..GTsCsA...........TssTsGGsAGsuCs.Ts.TTuGAAGATGAuTTsACACC.. consensus/90% u......AAssGTAT.AsTGG..GTsCsA...........TssTsGGsAGsuCs.Ts.TTuGAAGATGAuTTsACACC.. consensus/80% u......AAssGTAT.AsTGG..GTsCsA...........TssTsGGsAGsuCs.Ts.TTuGAAGATGAuTTsACACC.. consensus/70% u......AAssGTAT.AsTGG..GTsCsA...........TssTsGGsAGsuCs.Ts.TTuGAAGATGAuTTsACACC.. cov pid 14641 : . . . . 7 . . 14720 1 2019nCoV 100.0% 100.0% ttgatgttgtta-------gacaatgctcaggtgt---tactttccaaagtgcagtgaa----aagaacaatc---aag- 2 SARS 95.5% 77.9% ttgatgttgtta-------gacaatgctctggtgt---taccttccaaggt------aagttcaagaa-aattgttaag- 3 MERS 74.7% 47.2% -tgaggatgttaatatgcagattatg----ggtgtggtta---tgcagagtggtgt-------gagaa--------aagt consensus/100% .TGAsGsTGTTA.......GAssATG....GGTGT...TA...TsCAuuGT............uAGAA........AAG. consensus/90% .TGAsGsTGTTA.......GAssATG....GGTGT...TA...TsCAuuGT............uAGAA........AAG. consensus/80% .TGAsGsTGTTA.......GAssATG....GGTGT...TA...TsCAuuGT............uAGAA........AAG. consensus/70% .TGAsGsTGTTA.......GAssATG....GGTGT...TA...TsCAuuGT............uAGAA........AAG. cov pid 14721 . . : . . . . 8 14800 1 2019nCoV 100.0% 100.0% -------ggtaca-caccactggttgtt----actcacaattttgacttca--cttt----tagttttagtccagagtac 2 SARS 95.5% 77.9% -------ggcact-catcattggatgcttttaactt----tcttgacatca--ctat----tgattcttgttcaaagtac 3 MERS 74.7% 47.2% tacatatggtactgcg-cattggttgtttgcgac------ccttgtc-tcaacctatgtgataatctta---caagccac consensus/100% .......GGsACs.Cu.CAsTGGsTGsT....AC......ssTTGsC.TCA..CTsT....TuuTssTs...CAuussAC consensus/90% .......GGsACs.Cu.CAsTGGsTGsT....AC......ssTTGsC.TCA..CTsT....TuuTssTs...CAuussAC consensus/80% .......GGsACs.Cu.CAsTGGsTGsT....AC......ssTTGsC.TCA..CTsT....TuuTssTs...CAuussAC consensus/70% .......GGsACs.Cu.CAsTGGsTGsT....AC......ssTTGsC.TCA..CTsT....TuuTssTs...CAuussAC cov pid 14801 . . . . : . . . 14880 1 2019nCoV 100.0% 100.0% tcaatggtctttgttcttttttttgt--atgaaaatgccttttta---cctttt----------------gctatgggta 2 SARS 95.5% 77.9% acagtggtcactgt--ttttctttgtttacgagaatgctttcttg---ccattt----------------actcttggta 3 MERS 74.7% 47.2% taaa------------tttactttgt----ggaactacttgtttgagactattcccacacagttgttcccactct---ta consensus/100% ssAu............TTTssTTTGT....GuuAsTuCsTssTTu...CssTTs................uCTsT...TA consensus/90% ssAu............TTTssTTTGT....GuuAsTuCsTssTTu...CssTTs................uCTsT...TA consensus/80% ssAu............TTTssTTTGT....GuuAsTuCsTssTTu...CssTTs................uCTsT...TA consensus/70% ssAu............TTTssTTTGT....GuuAsTuCsTssTTu...CssTTs................uCTsT...TA cov pid 14881 . 9 . . . . : . 14960 1 2019nCoV 100.0% 100.0% ttat------tg---ct--atgtctgcttttgcaatgatgtttgtcaaacataagcatgcatttctctg---tttgtttt 2 SARS 95.5% 77.9% ttatggcaattg---ctgcatg--tgct------atgctgcttgttaagcataagcacgcattcttgtg---cttgtttc 3 MERS 74.7% 47.2% tt--------tgtgact--atg---gccttcgttatgttgttggttaaacacaaacacaccttttt--gacactt-ttct consensus/100% TT........TG...CT..ATG...GCs......ATGsTGsTsGTsAAuCAsAAuCAsuCsTTssT..G...sTT.TTss consensus/90% TT........TG...CT..ATG...GCs......ATGsTGsTsGTsAAuCAsAAuCAsuCsTTssT..G...sTT.TTss consensus/80% TT........TG...CT..ATG...GCs......ATGsTGsTsGTsAAuCAsAAuCAsuCsTTssT..G...sTT.TTss consensus/70% TT........TG...CT..ATG...GCs......ATGsTGsTsGTsAAuCAsAAuCAsuCsTTssT..G...sTT.TTss cov pid 14961 . . . 0 . . . . 15040 1 2019nCoV 100.0% 100.0% tgttaccttctcttgccactgtagcttatt--------tta-----atatggtctatatgcctgcta------------- 2 SARS 95.5% 77.9% tgttaccttctcttgcaacagttgcttact--------tta-----atatggtctacatgcctgcta------------- 3 MERS 74.7% 47.2% tgttgcct------------gtggct-atttgtttgacttatgcaaacatagtctacgagcccactactcccatttcgtc consensus/100% TGTTuCCT............GTsGCT.AsT........TTA.....AsATuGTCTAsusGCCsuCTA............. consensus/90% TGTTuCCT............GTsGCT.AsT........TTA.....AsATuGTCTAsusGCCsuCTA............. consensus/80% TGTTuCCT............GTsGCT.AsT........TTA.....AsATuGTCTAsusGCCsuCTA............. consensus/70% TGTTuCCT............GTsGCT.AsT........TTA.....AsATuGTCTAsusGCCsuCTA............. cov pid 15041 : . . . . 1 . . 15120 1 2019nCoV 100.0% 100.0% ---gttg----------------gg-----------tgatgcgtattatg--------acatgg-ttgg-atatggttg- 2 SARS 95.5% 77.9% ---gctg----------------gg-----------tgatgcgtatcatg--------acatggcttga-at-tggctg- 3 MERS 74.7% 47.2% agcgctgattgcagttgcaaattggcttgcccccactaatgcttat-atgcgcactacacata--ctgatat-tgg-tgt consensus/100% ...GsTG................GG...........TuATGCsTAT.ATG........ACATu..sTGu.AT.TGG.TG. consensus/90% ...GsTG................GG...........TuATGCsTAT.ATG........ACATu..sTGu.AT.TGG.TG. consensus/80% ...GsTG................GG...........TuATGCsTAT.ATG........ACATu..sTGu.AT.TGG.TG. consensus/70% ...GsTG................GG...........TuATGCsTAT.ATG........ACATu..sTGu.AT.TGG.TG. cov pid 15121 . . : . . . . 2 15200 1 2019nCoV 100.0% 100.0% --atactagtttgtctggttttaagctaaaagactgtgtta-----tgta----------tg-------catcagctgt- 2 SARS 95.5% 77.9% --acactagcttgtctggttataggcttaaggattgtgtta-----tgta----------tg-------cttcagcttt- 3 MERS 74.7% 47.2% ctacattagtatgtc---------act-------tgtattagtcattgtagtgaagagattgtacaacccatca-ctttc consensus/100% ..AsAsTAGssTGTC.........uCT.......TGTuTTA.....TGTA..........TG.......CsTCA.CTsT. consensus/90% ..AsAsTAGssTGTC.........uCT.......TGTuTTA.....TGTA..........TG.......CsTCA.CTsT. consensus/80% ..AsAsTAGssTGTC.........uCT.......TGTuTTA.....TGTA..........TG.......CsTCA.CTsT. consensus/70% ..AsAsTAGssTGTC.........uCT.......TGTuTTA.....TGTA..........TG.......CsTCA.CTsT. cov pid 15201 . . . . : . . . 15280 1 2019nCoV 100.0% 100.0% -agtgttactaatccttatgacagcaagaactgtgta-tgatg--atggtgctaggagagtgtggacacttatgaatgtc 2 SARS 95.5% 77.9% -agttttgcttattctcatgacagctcgcactgttta-tgatg--atgctgctagacgtgtttggacactgatgaatgtc 3 MERS 74.7% 47.2% taactttgc--------------gttagcattgtgcagtggtgtaatg--------------tgg----t------tgt- consensus/100% .AussTTuC..............GsssGsAsTGTssA.TGuTG..ATG..............TGG....T......TGT. consensus/90% .AussTTuC..............GsssGsAsTGTssA.TGuTG..ATG..............TGG....T......TGT. consensus/80% .AussTTuC..............GsssGsAsTGTssA.TGuTG..ATG..............TGG....T......TGT. consensus/70% .AussTTuC..............GsssGsAsTGTssA.TGuTG..ATG..............TGG....T......TGT. cov pid 15281 . 3 . . . . : . 15360 1 2019nCoV 100.0% 100.0% -ttgacactcgtttataaagtttattatggtaatgctttaga------tcaagcc--atttcc-atgtgggctctta-ta 2 SARS 95.5% 77.9% att-acacttgtttacaaagtctactatggtaatgctttaga------tcaagct--atttcc-atgtgggc-cttagtt 3 MERS 74.7% 47.2% ----acact----------------tatagca-----ttggagaagcctcaagccccattgcctatctgg---------- consensus/100% ....ACACT................TATuGsA.....TTuGA......TCAAGCs..ATTsCC.ATsTGG.......... consensus/90% ....ACACT................TATuGsA.....TTuGA......TCAAGCs..ATTsCC.ATsTGG.......... consensus/80% ....ACACT................TATuGsA.....TTuGA......TCAAGCs..ATTsCC.ATsTGG.......... consensus/70% ....ACACT................TATuGsA.....TTuGA......TCAAGCs..ATTsCC.ATsTGG.......... cov pid 15361 . . . 4 . . . . 15440 1 2019nCoV 100.0% 100.0% atctctgttac----ttctaactactcaggtg--tagttacaactgtcatgtttttggccagaggtattgtttttatgtg 2 SARS 95.5% 77.9% atttctgtaac----ctctaactattctggtg--tcgttacgactatcatgtttttagctagagctatagtgtttgtgtg 3 MERS 74.7% 47.2% -tttttgtcactacactc--acta-----gtgatta--tacgatta-ca-gtctttg----------------ttac--- consensus/100% .TsTsTGTsAC....sTC..ACTA.....GTG..Ts..TACuAsTu.CA.GTsTTTu................TTus... consensus/90% .TsTsTGTsAC....sTC..ACTA.....GTG..Ts..TACuAsTu.CA.GTsTTTu................TTus... consensus/80% .TsTsTGTsAC....sTC..ACTA.....GTG..Ts..TACuAsTu.CA.GTsTTTu................TTus... consensus/70% .TsTsTGTsAC....sTC..ACTA.....GTG..Ts..TACuAsTu.CA.GTsTTTu................TTus... cov pid 15441 : . . . . 5 . . 15520 1 2019nCoV 100.0% 100.0% tg------ttg----agtattgc-------cctatt-ttcttca-taactggtaataca-ctt-ca---gtgt------- 2 SARS 95.5% 77.9% tg------ttg----agtattac-------cc-attgttattta-ttactggcaacac--cttaca---gtgt------- 3 MERS 74.7% 47.2% tgtcaaccttgcaaaagt-ttgcacttatgcc-atc----tttgcttact--caccacagcttacacttgtgtttccgga consensus/100% TG......TTG....AGT.TTuC.......CC.ATs....TTsu.TsACT..sAssAC..CTT.CA...GTGT....... consensus/90% TG......TTG....AGT.TTuC.......CC.ATs....TTsu.TsACT..sAssAC..CTT.CA...GTGT....... consensus/80% TG......TTG....AGT.TTuC.......CC.ATs....TTsu.TsACT..sAssAC..CTT.CA...GTGT....... consensus/70% TG......TTG....AGT.TTuC.......CC.ATs....TTsu.TsACT..sAssAC..CTT.CA...GTGT....... cov pid 15521 . . : . . . . 6 15600 1 2019nCoV 100.0% 100.0% -------ataatgctagtttatt--------gtttcttaggctatttt----tgtact--tgttactttggc-------c 2 SARS 95.5% 77.9% -------atcatgcttgtttatt--------gtttcttaggctattgt----tg--ctgctgctactttggc-------c 3 MERS 74.7% 47.2% agtgaagatgatact--tttattatacacatgt---ttagg----tttcatgtgtact--tgctattttggtgtcttctc consensus/100% .......ATsATuCT..TTTATT........GT...TTAGG....TsT....TG..CT..TGsTAsTTTGGs.......C consensus/90% .......ATsATuCT..TTTATT........GT...TTAGG....TsT....TG..CT..TGsTAsTTTGGs.......C consensus/80% .......ATsATuCT..TTTATT........GT...TTAGG....TsT....TG..CT..TGsTAsTTTGGs.......C consensus/70% .......ATsATuCT..TTTATT........GT...TTAGG....TsT....TG..CT..TGsTAsTTTGGs.......C cov pid 15601 . . . . : . . . 15680 1 2019nCoV 100.0% 100.0% tcttttgtttactcaaccgctactttagactga------ctcttggtgtttatgattactt--agtttctacacaggagt 2 SARS 95.5% 77.9% ttttctgtttactcaaccgttacttcaggctta------ctcttggtgtttatgactactt--ggtctctacacaagaat 3 MERS 74.7% 47.2% tcttttg-------aacc------ttaagcttagagcacctatgggtgtctatgact--ttaaggtctcaacacaagagt consensus/100% TsTTsTG.......AACC......TsAuuCTsA......CTsTsGGTGTsTATGAsT..TT..uGTsTCsACACAuGAuT consensus/90% TsTTsTG.......AACC......TsAuuCTsA......CTsTsGGTGTsTATGAsT..TT..uGTsTCsACACAuGAuT consensus/80% TsTTsTG.......AACC......TsAuuCTsA......CTsTsGGTGTsTATGAsT..TT..uGTsTCsACACAuGAuT consensus/70% TsTTsTG.......AACC......TsAuuCTsA......CTsTsGGTGTsTATGAsT..TT..uGTsTCsACACAuGAuT cov pid 15681 . 7 . . . . : . 15760 1 2019nCoV 100.0% 100.0% ttagatatatgaattcacagggactactcc--------------cacccaagaat-------agcatag--atgccttca 2 SARS 95.5% 77.9% ttaggtatatgaactcccaggggcttttgc--------------ctcctaagagt-------agtattg--atgctttca 3 MERS 74.7% 47.2% tcagattcatga--------------ctgctaacaatctaactgcacctagaaattcttgggag----gctatg------ consensus/100% TsAGuTssATGA..............sTsC..............CsCCsAuuAuT.......AG....G..ATG...... consensus/90% TsAGuTssATGA..............sTsC..............CsCCsAuuAuT.......AG....G..ATG...... consensus/80% TsAGuTssATGA..............sTsC..............CsCCsAuuAuT.......AG....G..ATG...... consensus/70% TsAGuTssATGA..............sTsC..............CsCCsAuuAuT.......AG....G..ATG...... cov pid 15761 . . . 8 . . . . 15840 1 2019nCoV 100.0% 100.0% aactc--aacattaaattgttgggtgttggtggcaaaccttgtatcaaagtagccactgtacagtctaaa---atgtcag 2 SARS 95.5% 77.9% agctt--aacattaagttgttgggtattggaggtaaaccatgtatcaaggttgctactgtacagtctaaa---atgtctg 3 MERS 74.7% 47.2% -gctctgaactttaagttaataggtattggcggtacaccttgtataaaggttgctgctatgcagtctaaactta---cag consensus/100% .uCTs..AACsTTAAuTTusTuGGTuTTGGsGGsAsACCsTGTATsAAuGTsGCsuCTuTuCAGTCTAAA...A...CsG consensus/90% .uCTs..AACsTTAAuTTusTuGGTuTTGGsGGsAsACCsTGTATsAAuGTsGCsuCTuTuCAGTCTAAA...A...CsG consensus/80% .uCTs..AACsTTAAuTTusTuGGTuTTGGsGGsAsACCsTGTATsAAuGTsGCsuCTuTuCAGTCTAAA...A...CsG consensus/70% .uCTs..AACsTTAAuTTusTuGGTuTTGGsGGsAsACCsTGTATsAAuGTsGCsuCTuTuCAGTCTAAA...A...CsG cov pid 15841 : . . . . 9 . . 15920 1 2019nCoV 100.0% 100.0% atgtaaagtgcacatcagtagtcttactctcagttttgcaaca-----actcagag--------tagaatcatcatctaa 2 SARS 95.5% 77.9% acgtaaagtgcacatctgtggtactgctctcggttcttcaaca-----acttagag--------tagagtcatcttctaa 3 MERS 74.7% 47.2% atcttaaatgcacatctgtggttctcctctctgtgctccaacagttacacttagaggctaatagtagggcc--------- consensus/100% AssTsAAuTGCACATCsGTuGTssTsCTCTCsGTssTsCAACA.....ACTsAGAG........TAGuusC......... consensus/90% AssTsAAuTGCACATCsGTuGTssTsCTCTCsGTssTsCAACA.....ACTsAGAG........TAGuusC......... consensus/80% AssTsAAuTGCACATCsGTuGTssTsCTCTCsGTssTsCAACA.....ACTsAGAG........TAGuusC......... consensus/70% AssTsAAuTGCACATCsGTuGTssTsCTCTCsGTssTsCAACA.....ACTsAGAG........TAGuusC......... cov pid 15921 . . : . . . . 0 16000 1 2019nCoV 100.0% 100.0% attgtgggct--caatgtgtccagttacacaatgacattct-ctt---agctaaagatactactgaagcctttgaaaaaa 2 SARS 95.5% 77.9% attgtgggca--caatgtgtacaactccacaatgatattcttctt----gcaaaagacacaactgaagctttcgagaaga 3 MERS 74.7% 47.2% ----tgggctttc--tgtgttaaatgccataatgatat----attggcagcaacagaccccagtgaggctttcgagaaa- consensus/100% ....TGGGCs..C..TGTGTssAusssCAsAATGAsAT....sTT....GCsAsAGAssCsAsTGAuGCsTTsGAuAAu. consensus/90% ....TGGGCs..C..TGTGTssAusssCAsAATGAsAT....sTT....GCsAsAGAssCsAsTGAuGCsTTsGAuAAu. consensus/80% ....TGGGCs..C..TGTGTssAusssCAsAATGAsAT....sTT....GCsAsAGAssCsAsTGAuGCsTTsGAuAAu. consensus/70% ....TGGGCs..C..TGTGTssAusssCAsAATGAsAT....sTT....GCsAsAGAssCsAsTGAuGCsTTsGAuAAu. cov pid 16001 . . . . : . . . 16080 1 2019nCoV 100.0% 100.0% tggtttc-----actacttt--ctg----------ttttgctttccatgcagggtgctgtagacataaacaagctttgtg 2 SARS 95.5% 77.9% tggtttc-----tct--tttgtctg----------ttttgctatccatgcagggtgctgtagacattaataggttgtgcg 3 MERS 74.7% 47.2% ----ttcgtaagtct-ctttg-ctactttaatgactttttct----------ggtaatgtagatcttga-------tgcg consensus/100% ....TTC.....sCT..TTT..CTu..........TTTTsCT..........GGTusTGTAGAssTsuA.......TGsG consensus/90% ....TTC.....sCT..TTT..CTu..........TTTTsCT..........GGTusTGTAGAssTsuA.......TGsG consensus/80% ....TTC.....sCT..TTT..CTu..........TTTTsCT..........GGTusTGTAGAssTsuA.......TGsG consensus/70% ....TTC.....sCT..TTT..CTu..........TTTTsCT..........GGTusTGTAGAssTsuA.......TGsG cov pid 16081 . 1 . . . . : . 16160 1 2019nCoV 100.0% 100.0% --aa-----gaaatgctggaca----------acagggcaac-cttacaagctatagcctcagagtttagttcccttcca 2 SARS 95.5% 77.9% --ag-----gaaatgctcgata----------accgtgctactctt-caggctattgcttcagaatttagttctttacca 3 MERS 74.7% 47.2% ttagctagtgatatttttgacactcctagcgta----------ctt-caagctactctttctgagttt------------ consensus/100% ..Au.....GAsATssTsGAsA..........A..........CTT.CAuGCTAsssssTCsGAuTTT............ consensus/90% ..Au.....GAsATssTsGAsA..........A..........CTT.CAuGCTAsssssTCsGAuTTT............ consensus/80% ..Au.....GAsATssTsGAsA..........A..........CTT.CAuGCTAsssssTCsGAuTTT............ consensus/70% ..Au.....GAsATssTsGAsA..........A..........CTT.CAuGCTAsssssTCsGAuTTT............ cov pid 16161 . . . 2 . . . . 16240 1 2019nCoV 100.0% 100.0% tcatat---gcagcttttgct---------actgctcaagaagcttatgagcaggctgttgctaatggtgattctg---- 2 SARS 95.5% 77.9% tcatat---gccgcttatgcc---------actgcccaggaggcctatgagcaggctgtagctaatggtgattctg---- 3 MERS 74.7% 47.2% tcacacttagctacctttgctgagttggaagctgcgcagaaagcctatcaggaagct-------atgg--actctggtga consensus/100% TCAsAs...GCsuCsTsTGCs.........uCTGCsCAuuAuGCsTATsAGsAuGCT.......ATGG..AsTCTG.... consensus/90% TCAsAs...GCsuCsTsTGCs.........uCTGCsCAuuAuGCsTATsAGsAuGCT.......ATGG..AsTCTG.... consensus/80% TCAsAs...GCsuCsTsTGCs.........uCTGCsCAuuAuGCsTATsAGsAuGCT.......ATGG..AsTCTG.... consensus/70% TCAsAs...GCsuCsTsTGCs.........uCTGCsCAuuAuGCsTATsAGsAuGCT.......ATGG..AsTCTG.... cov pid 16241 : . . . . 3 . . 16320 1 2019nCoV 100.0% 100.0% -----------aagttgttcttaaaaag---ttgaagaagtctttgaatgtggctaaa------tctgaatttga----- 2 SARS 95.5% 77.9% -----------aagtcgttctcaaaaag---ttaaagaaatctttgaatgtggctaaa------tctgagtttga----- 3 MERS 74.7% 47.2% cacctcaccacaa---gttcttaa---ggctttgcagaaggctgttaatatagctaaaaacgcctatga----gaaggat consensus/100% ...........AA...GTTCTsAA...G...TTusAGAAusCTsTsAATuTuGCTAAA......TsTGA....GA..... consensus/90% ...........AA...GTTCTsAA...G...TTusAGAAusCTsTsAATuTuGCTAAA......TsTGA....GA..... consensus/80% ...........AA...GTTCTsAA...G...TTusAGAAusCTsTsAATuTuGCTAAA......TsTGA....GA..... consensus/70% ...........AA...GTTCTsAA...G...TTusAGAAusCTsTsAATuTuGCTAAA......TsTGA....GA..... cov pid 16321 . . : . . . . 4 16400 1 2019nCoV 100.0% 100.0% ----ccgtgatgcagccatgcaacgtaagttggaaaagatggctgatcaagctatgac--ccaaatgtataaacaggcta 2 SARS 95.5% 77.9% ----ccgtgatgctgccatgcaacgcaagttggaaaagatggcagatcaggctatgac--ccaaatgtacaaacaggcaa 3 MERS 74.7% 47.2% aaggcagtg-----gcc------cgtaagttagaacgtatggctgatcaggctatgacttct--atgtataagcaagcac consensus/100% ....CsGTG.....GCC......CGsAAGTTuGAAsusATGGCsGATCAuGCTATGAC..Cs..ATGTAsAAuCAuGCss consensus/90% ....CsGTG.....GCC......CGsAAGTTuGAAsusATGGCsGATCAuGCTATGAC..Cs..ATGTAsAAuCAuGCss consensus/80% ....CsGTG.....GCC......CGsAAGTTuGAAsusATGGCsGATCAuGCTATGAC..Cs..ATGTAsAAuCAuGCss consensus/70% ....CsGTG.....GCC......CGsAAGTTuGAAsusATGGCsGATCAuGCTATGAC..Cs..ATGTAsAAuCAuGCss cov pid 16401 . . . . : . . . 16480 1 2019nCoV 100.0% 100.0% gat-ctgaggacaagagggcaaaagttactagtgctatgcagacaatgcttttcactatgcttagaaagttggataatga 2 SARS 95.5% 77.9% gat-ctgaggacaagagggcaaaagtaactagtgctatgcaaacaatgctcttcactatgcttaggaagcttgataatga 3 MERS 74.7% 47.2% g-tgctgaagacaagaaagcaaaaattgtcagtgctatgcaaactatgttgtttggtatgattaagaagctcgacaacga consensus/100% G.T.CTGAuGACAAGAuuGCAAAAuTsussAGTGCTATGCAuACsATGsTsTTsusTATGsTTAuuAAGsTsGAsAAsGA consensus/90% G.T.CTGAuGACAAGAuuGCAAAAuTsussAGTGCTATGCAuACsATGsTsTTsusTATGsTTAuuAAGsTsGAsAAsGA consensus/80% G.T.CTGAuGACAAGAuuGCAAAAuTsussAGTGCTATGCAuACsATGsTsTTsusTATGsTTAuuAAGsTsGAsAAsGA consensus/70% G.T.CTGAuGACAAGAuuGCAAAAuTsussAGTGCTATGCAuACsATGsTsTTsusTATGsTTAuuAAGsTsGAsAAsGA cov pid 16481 . 5 . . . . : . 16560 1 2019nCoV 100.0% 100.0% tgcactcaac---aacattatcaacaatgcaagagatggttgtgttcc-cttgaacataatacctcttacaacag----- 2 SARS 95.5% 77.9% tgcacttaac---aacattatcaacaatgcgcgtgatggttgtgttccactc-aacatcataccattgactacag----- 3 MERS 74.7% 47.2% tgttcttaatggtatcatt-tc--taacgctaggaatggttgtatacctctt-agtgtcatcccact-------gtgtgc consensus/100% TGssCTsAAs...AsCATT.TC..sAAsGCssGsuATGGTTGTuTsCC.CTs.AusuTsATsCCssT.......G..... consensus/90% TGssCTsAAs...AsCATT.TC..sAAsGCssGsuATGGTTGTuTsCC.CTs.AusuTsATsCCssT.......G..... consensus/80% TGssCTsAAs...AsCATT.TC..sAAsGCssGsuATGGTTGTuTsCC.CTs.AusuTsATsCCssT.......G..... consensus/70% TGssCTsAAs...AsCATT.TC..sAAsGCssGsuATGGTTGTuTsCC.CTs.AusuTsATsCCssT.......G..... cov pid 16561 . . . 6 . . . . 16640 1 2019nCoV 100.0% 100.0% --cagccaaactaat-g-gttgtcataccagactataacacatataaaaatacgtgtg--at--ggtacaaca--tttac 2 SARS 95.5% 77.9% --cagccaaactcat-g-gttgttgtccctgattatggtacctacaagaacacttgtg--at--ggt--aacacctttac 3 MERS 74.7% 47.2% ttcaaataaact--tcgcgttgtaattcctgact-t--cac-----------cgtctggaatcaggt--ag-----tcac consensus/100% ..CAussAAACT..T.G.GTTGTsuTsCCsGAsT.T..sAC...........CsTsTG..AT..GGT..Au.....TsAC consensus/90% ..CAussAAACT..T.G.GTTGTsuTsCCsGAsT.T..sAC...........CsTsTG..AT..GGT..Au.....TsAC consensus/80% ..CAussAAACT..T.G.GTTGTsuTsCCsGAsT.T..sAC...........CsTsTG..AT..GGT..Au.....TsAC consensus/70% ..CAussAAACT..T.G.GTTGTsuTsCCsGAsT.T..sAC...........CsTsTG..AT..GGT..Au.....TsAC cov pid 16641 : . . . . 7 . . 16720 1 2019nCoV 100.0% 100.0% ttatgcatca---------------gcattgtgggaaatccaacaggttgtaga---tgcagatagtaaaattgttcaa- 2 SARS 95.5% 77.9% atatgcatct---------------gcactctgggaaatccagcaagttgttga---tgcggatagcaagattgttcaa- 3 MERS 74.7% 47.2% atatccctcgcttaactacgctggggctttgtgggacatt--aca-gttataaacaatgtggacaatgaaattgtt-aag consensus/100% sTATsCsTCs...............GCssTsTGGGAsATs..uCA.GTTuTsuA...TGsuGAsAusuAuATTGTT.AA. consensus/90% sTATsCsTCs...............GCssTsTGGGAsATs..uCA.GTTuTsuA...TGsuGAsAusuAuATTGTT.AA. consensus/80% sTATsCsTCs...............GCssTsTGGGAsATs..uCA.GTTuTsuA...TGsuGAsAusuAuATTGTT.AA. consensus/70% sTATsCsTCs...............GCssTsTGGGAsATs..uCA.GTTuTsuA...TGsuGAsAusuAuATTGTT.AA. cov pid 16721 . . : . . . . 8 16800 1 2019nCoV 100.0% 100.0% -ctt-agtgaaattagtatg-----gac-------aattcacctaatttagcatggcctcttattgtaa-----cagctt 2 SARS 95.5% 77.9% -ctt-agtgaaattaacatg-----gac-------aattcaccaaatttggcttggcctcttattgtta-----cagctc 3 MERS 74.7% 47.2% tcttcag----------atgttgtagacagcaatgaa-------aatttaacatggccacttgtt-ttagaatgca-ct- consensus/100% .CTT.AG..........ATG.....GAC.......AA.......AATTTuuCsTGGCCsCTTuTT.TsA.....CA.CT. consensus/90% .CTT.AG..........ATG.....GAC.......AA.......AATTTuuCsTGGCCsCTTuTT.TsA.....CA.CT. consensus/80% .CTT.AG..........ATG.....GAC.......AA.......AATTTuuCsTGGCCsCTTuTT.TsA.....CA.CT. consensus/70% .CTT.AG..........ATG.....GAC.......AA.......AATTTuuCsTGGCCsCTTuTT.TsA.....CA.CT. cov pid 16801 . . . . : . . . 16880 1 2019nCoV 100.0% 100.0% taaggg---ccaattctgctgtcaaattacagaataatgag-------cttagtcctgttgcactacgacagatgtct-- 2 SARS 95.5% 77.9% taagag---ccaactcagctgttaaactacagaataatgaa-------ctgagtccagtagcactacgacagatgtcc-- 3 MERS 74.7% 47.2% --agggcatccacttctgccgttaagttgcaaaataatgagatcaaacctt------------------cag--gtctaa consensus/100% ..AGuG...CCAssTCsGCsGTsAAusTuCAuAATAATGAu.......CTs..................CAG..GTCs.. consensus/90% ..AGuG...CCAssTCsGCsGTsAAusTuCAuAATAATGAu.......CTs..................CAG..GTCs.. consensus/80% ..AGuG...CCAssTCsGCsGTsAAusTuCAuAATAATGAu.......CTs..................CAG..GTCs.. consensus/70% ..AGuG...CCAssTCsGCsGTsAAusTuCAuAATAATGAu.......CTs..................CAG..GTCs.. cov pid 16881 . 9 . . . . : . 16960 1 2019nCoV 100.0% 100.0% ----------tgtg-ctgccggtactaca----caaactgcttgcactg--atgac-aatgcgttagcttactacaacac 2 SARS 95.5% 77.9% ----------tgtg-cggctggtaccaca----caaacagcttgtactg--atgac-aatgcacttgcctactataaca- 3 MERS 74.7% 47.2% aaaccatggttgtgtctgcgggt----caagagcaaacta-----actgtaat-actagttccttagcttatta------ consensus/100% ..........TGTG.CsGCsGGT....CA....CAAACsu.....ACTG..AT.AC.AuTsCssTsGCsTAsTA...... consensus/90% ..........TGTG.CsGCsGGT....CA....CAAACsu.....ACTG..AT.AC.AuTsCssTsGCsTAsTA...... consensus/80% ..........TGTG.CsGCsGGT....CA....CAAACsu.....ACTG..AT.AC.AuTsCssTsGCsTAsTA...... consensus/70% ..........TGTG.CsGCsGGT....CA....CAAACsu.....ACTG..AT.AC.AuTsCssTsGCsTAsTA...... cov pid 16961 . . . 0 . . . . 17040 1 2019nCoV 100.0% 100.0% aa--caaa--------gggaggtaggtttg-----tac---ttgcactgttatccgattta-cagg---atttgaaatgg 2 SARS 95.5% 77.9% -attcgaa--------gggaggtaggtttg-----tgc---tggcattactatcagacc-accaag---atctcaaatgg 3 MERS 74.7% 47.2% ----cgaacctgtgcaggg--------tcgtaaaatgctgatggctcttctttctgat--a--atgcctatctcaaatgg consensus/100% ....CuAA........GGG........TsG.....TuC...TsGCssTssTsTCsGAs..A..AsG...ATsTsAAATGG consensus/90% ....CuAA........GGG........TsG.....TuC...TsGCssTssTsTCsGAs..A..AsG...ATsTsAAATGG consensus/80% ....CuAA........GGG........TsG.....TuC...TsGCssTssTsTCsGAs..A..AsG...ATsTsAAATGG consensus/70% ....CuAA........GGG........TsG.....TuC...TsGCssTssTsTCsGAs..A..AsG...ATsTsAAATGG cov pid 17041 : . . . . 1 . . 17120 1 2019nCoV 100.0% 100.0% gc---t-----agattccctaagagtgatggaactggtactatctat----acagaactggaaccaccttgtaggt--tt 2 SARS 95.5% 77.9% gc---t-----agattccctaagagtgatggtacaggtacaatttac----acagaactggaaccaccttgtaggt--tt 3 MERS 74.7% 47.2% gcgcgtgttgaagg-----taag---gacgg----------atttgtcagtgtagagctacaacctccttgcaaattctt consensus/100% GC...T.....AGu.....TAAG...GAsGG..........ATsTus....usAGAuCTusAACCsCCTTGsAuuT..TT consensus/90% GC...T.....AGu.....TAAG...GAsGG..........ATsTus....usAGAuCTusAACCsCCTTGsAuuT..TT consensus/80% GC...T.....AGu.....TAAG...GAsGG..........ATsTus....usAGAuCTusAACCsCCTTGsAuuT..TT consensus/70% GC...T.....AGu.....TAAG...GAsGG..........ATsTus....usAGAuCTusAACCsCCTTGsAuuT..TT cov pid 17121 . . : . . . . 2 17200 1 2019nCoV 100.0% 100.0% g-ttacagacacacctaaaggtcctaaagt--gaagtatttatactttattaaaggattaaacaacctaaatag-aggta 2 SARS 95.5% 77.9% g-ttacagacacaccaaaagggcctaaagt--gaaatacttgtacttcatcaaaggcttaaacaacctaaatag-aggta 3 MERS 74.7% 47.2% gattgcggg---accaaaaggacctgaaatccga--tatctctattttgttaaaaatcttaacaaccttcatcgcgggca consensus/100% G.TTuCuGu...ACCsAAAGGsCCTuAAuT..GA..TAssTsTAsTTsuTsAAAuussTsAACAACCTssATsG.uGGsA consensus/90% G.TTuCuGu...ACCsAAAGGsCCTuAAuT..GA..TAssTsTAsTTsuTsAAAuussTsAACAACCTssATsG.uGGsA consensus/80% G.TTuCuGu...ACCsAAAGGsCCTuAAuT..GA..TAssTsTAsTTsuTsAAAuussTsAACAACCTssATsG.uGGsA consensus/70% G.TTuCuGu...ACCsAAAGGsCCTuAAuT..GA..TAssTsTAsTTsuTsAAAuussTsAACAACCTssATsG.uGGsA cov pid 17201 . . . . : . . . 17280 1 2019nCoV 100.0% 100.0% tggtact-tggta-gtttagctgccacagt---acgtctacaagctggt---aatgcaacagaagt--gcctgccaattc 2 SARS 95.5% 77.9% tggtgct-gggca-gtttagctgctacagt---acgtcttcaggctgga---aatgctacagaagt--acctgccaattc 3 MERS 74.7% 47.2% -agtgttagggcacatt--gctgcgactgttaga---ttgcaagctggttctaac---accga-gtttgcct-ctaattc consensus/100% .uGTusT.sGGsA.uTT..GCTGCsACsGT...A...sTsCAuGCTGGs...AAs...ACsGA.GT..uCCT.CsAATTC consensus/90% .uGTusT.sGGsA.uTT..GCTGCsACsGT...A...sTsCAuGCTGGs...AAs...ACsGA.GT..uCCT.CsAATTC consensus/80% .uGTusT.sGGsA.uTT..GCTGCsACsGT...A...sTsCAuGCTGGs...AAs...ACsGA.GT..uCCT.CsAATTC consensus/70% .uGTusT.sGGsA.uTT..GCTGCsACsGT...A...sTsCAuGCTGGs...AAs...ACsGA.GT..uCCT.CsAATTC cov pid 17281 . 3 . . . . : . 17360 1 2019nCoV 100.0% 100.0% aact--gtattatc-tttctgtgct---tttgctgtagatgctgctaaagcttacaaagattatctag-------ctagt 2 SARS 95.5% 77.9% aact--gtgctttc-cttctgtgct---tttgcagtagaccctgctaaagcatataaggattacctag-------caagt 3 MERS 74.7% 47.2% --ctcggtgttgtcactt----gttaacttcaccgttgatcct--caaa-------aagcttatctcgatttcgtcaa-t consensus/100% ..CT..GTusTsTC.sTT....GsT...TTsuCsGTsGAssCT..sAAA.......AuGsTTAsCTsG.......CsA.T consensus/90% ..CT..GTusTsTC.sTT....GsT...TTsuCsGTsGAssCT..sAAA.......AuGsTTAsCTsG.......CsA.T consensus/80% ..CT..GTusTsTC.sTT....GsT...TTsuCsGTsGAssCT..sAAA.......AuGsTTAsCTsG.......CsA.T consensus/70% ..CT..GTusTsTC.sTT....GsT...TTsuCsGTsGAssCT..sAAA.......AuGsTTAsCTsG.......CsA.T cov pid 17361 . . . 4 . . . . 17440 1 2019nCoV 100.0% 100.0% ggggga-----caaccaatcactaattgtgttaagatgttgtgtacac---acactggtactggtcaggca-----ataa 2 SARS 95.5% 77.9% ggagga-----caaccaatcaccaactgtgtgaagatgttgtgtacac---acactggtacaggacaggca-----atta 3 MERS 74.7% 47.2% gcgggaggtgcc--ccattgacaaattgtgttaagatgct---tactcctaaaactggta-----caggtatagctatat consensus/100% GsuGGA.....C..CCAsTsACsAAsTGTGTsAAGATGsT...TACsC...AsACTGGTA.....CAGGsA.....ATss consensus/90% GsuGGA.....C..CCAsTsACsAAsTGTGTsAAGATGsT...TACsC...AsACTGGTA.....CAGGsA.....ATss consensus/80% GsuGGA.....C..CCAsTsACsAAsTGTGTsAAGATGsT...TACsC...AsACTGGTA.....CAGGsA.....ATss consensus/70% GsuGGA.....C..CCAsTsACsAAsTGTGTsAAGATGsT...TACsC...AsACTGGTA.....CAGGsA.....ATss cov pid 17441 : . . . . 5 . . 17520 1 2019nCoV 100.0% 100.0% cagttacaccgga------agccaatatggatcaagaatcctttggtggtgcatc-gtgttgtctgtactgccgttgc-c 2 SARS 95.5% 77.9% ctgtaacaccaga------agctaacatggaccaagagtcctttggtggtgcttc-atgttgtctgtattgtagatgc-c 3 MERS 74.7% 47.2% ctgttaaaccagagagtacagct------gatcaagagacttatggtggagcttcagtgt-gtctctattgccg-tgcgc consensus/100% CsGTsAsACCuGA......AGCs......GAsCAAGAusCsTsTGGTGGsGCsTC.uTGT.GTCTsTAsTGssG.TGC.C consensus/90% CsGTsAsACCuGA......AGCs......GAsCAAGAusCsTsTGGTGGsGCsTC.uTGT.GTCTsTAsTGssG.TGC.C consensus/80% CsGTsAsACCuGA......AGCs......GAsCAAGAusCsTsTGGTGGsGCsTC.uTGT.GTCTsTAsTGssG.TGC.C consensus/70% CsGTsAsACCuGA......AGCs......GAsCAAGAusCsTsTGGTGGsGCsTC.uTGT.GTCTsTAsTGssG.TGC.C cov pid 17521 . . : . . . . 6 17600 1 2019nCoV 100.0% 100.0% acatagatcatccaaat---cctaaaggat-tttgtgact-taaaaggtaagtatgtacaaatacctacaact---tgtg 2 SARS 95.5% 77.9% acattgaccatccaaat---cctaaaggat-tctgtgact-tgaaaggtaagtacgtccaaatacctaccact---tgtg 3 MERS 74.7% 47.2% atatagaacatcctgatgtctct----ggtgtttgtaaatat-aagggtaagtttgtccaaatccctgc---tcagtgtg consensus/100% AsATsGAsCATCCsuAT...sCT....GuT.TsTGTuAsT.T.AAuGGTAAGTssGTsCAAATsCCTuC...T...TGTG consensus/90% AsATsGAsCATCCsuAT...sCT....GuT.TsTGTuAsT.T.AAuGGTAAGTssGTsCAAATsCCTuC...T...TGTG consensus/80% AsATsGAsCATCCsuAT...sCT....GuT.TsTGTuAsT.T.AAuGGTAAGTssGTsCAAATsCCTuC...T...TGTG consensus/70% AsATsGAsCATCCsuAT...sCT....GuT.TsTGTuAsT.T.AAuGGTAAGTssGTsCAAATsCCTuC...T...TGTG cov pid 17601 . . . . : . . . 17680 1 2019nCoV 100.0% 100.0% ctaatgaccctgtggg-ttttacacttaa--aaacacagtctgtaccgtctg-cggtatgtggaaaggttatggctgtag 2 SARS 95.5% 77.9% ctaatgacccagtggg-ttttacacttag--aaacacagtctgtaccgtctg-cggaatgtggaaaggttatggctgtag 3 MERS 74.7% 47.2% tccgtgaccctgtgggattttg---tttgtcaaataccccctgtaatgtctgtcaatat-tggattggatatgggtgcaa consensus/100% sssuTGACCCsGTGGG.TTTTu...TTsu..AAAsACsssCTGTAssGTCTG.CuusAT.TGGAssGGsTATGGsTGsAu consensus/90% sssuTGACCCsGTGGG.TTTTu...TTsu..AAAsACsssCTGTAssGTCTG.CuusAT.TGGAssGGsTATGGsTGsAu consensus/80% sssuTGACCCsGTGGG.TTTTu...TTsu..AAAsACsssCTGTAssGTCTG.CuusAT.TGGAssGGsTATGGsTGsAu consensus/70% sssuTGACCCsGTGGG.TTTTu...TTsu..AAAsACsssCTGTAssGTCTG.CuusAT.TGGAssGGsTATGGsTGsAu cov pid 17681 . 7 . . . . : . 17760 1 2019nCoV 100.0% 100.0% ttgtgat-------------caactccgcgaaccc---atgcttcagtcagctgatgca-caatcgtttttaaacgggtt 2 SARS 95.5% 77.9% ttgtgac-------------caactccgcgaacccttgatg---cagtctgcggatgcatcaa-cgtttttaaacgggtt 3 MERS 74.7% 47.2% ttgtgactcgcttaggcaagcagcactgc----cc---------caatctaaagattc--caat--tttttaaacgagtc consensus/100% TTGTGAs.............CAuCsCsGC....CC.........CAuTCsussGATsC..CAA...TTTTTAAACGuGTs consensus/90% TTGTGAs.............CAuCsCsGC....CC.........CAuTCsussGATsC..CAA...TTTTTAAACGuGTs consensus/80% TTGTGAs.............CAuCsCsGC....CC.........CAuTCsussGATsC..CAA...TTTTTAAACGuGTs consensus/70% TTGTGAs.............CAuCsCsGC....CC.........CAuTCsussGATsC..CAA...TTTTTAAACGuGTs cov pid 17761 . . . 8 . . . . 17840 1 2019nCoV 100.0% 100.0% tgcggt------gtaagtgc------ag---cccgtcttacaccgtgcggcacaggcactagt------actgatgtcgt 2 SARS 95.5% 77.9% tgcggt------gtaagtgc------ag---cccgtcttacaccgtgcggcacaggcactagt------actgatgtcgt 3 MERS 74.7% 47.2% cggggttctattgtaaatgcccgaatagaaccctgtt---------------caag---tggtttgtccactgatgtcgt consensus/100% sGsGGT......GTAAuTGC......AG...CCsGTs...............CAuG...TuGT......ACTGATGTCGT consensus/90% sGsGGT......GTAAuTGC......AG...CCsGTs...............CAuG...TuGT......ACTGATGTCGT consensus/80% sGsGGT......GTAAuTGC......AG...CCsGTs...............CAuG...TuGT......ACTGATGTCGT consensus/70% sGsGGT......GTAAuTGC......AG...CCsGTs...............CAuG...TuGT......ACTGATGTCGT cov pid 17841 : . . . . 9 . . 17920 1 2019nCoV 100.0% 100.0% atacagggcttttgacatctacaat------gataaagtagctggttttgctaaattccta-aaaactaat---tgt--- 2 SARS 95.5% 77.9% ctacagggcttttgatatttacaac------gaaaaagttgctggttttgcaaagttccta-aaaactaat---tgc--- 3 MERS 74.7% 47.2% ctttagggcatttgacatctgcaactataaggctaaggttgctggtattggaaaa-tactacaagactaatacttgtagg consensus/100% sTssAGGGCsTTTGAsATsTuCAAs......GssAAuGTsGCTGGTsTTGssAAu.TsCTA.AAuACTAAT...TGs... consensus/90% sTssAGGGCsTTTGAsATsTuCAAs......GssAAuGTsGCTGGTsTTGssAAu.TsCTA.AAuACTAAT...TGs... consensus/80% sTssAGGGCsTTTGAsATsTuCAAs......GssAAuGTsGCTGGTsTTGssAAu.TsCTA.AAuACTAAT...TGs... consensus/70% sTssAGGGCsTTTGAsATsTuCAAs......GssAAuGTsGCTGGTsTTGssAAu.TsCTA.AAuACTAAT...TGs... cov pid 17921 . . : . . . . 0 18000 1 2019nCoV 100.0% 100.0% --tgtcgcttccaagaaaa--ggacga---agatgaca--atttaatt-gattcttactttgtagttaagagacacactt 2 SARS 95.5% 77.9% --tgtcgcttccaggagaa--ggatga---ggaaggca--attt-attagactcttactttgtagttaagaggcatacta 3 MERS 74.7% 47.2% tttgt----------agaattagatgaccaag--ggcatcattt-a---gactcctattttgtcgttaagaggcatacta consensus/100% ..TGT..........AuAA..uGAsGA...uG..GuCA..ATTT.A...GAsTCsTAsTTTGTsGTTAAGAGuCAsACTs consensus/90% ..TGT..........AuAA..uGAsGA...uG..GuCA..ATTT.A...GAsTCsTAsTTTGTsGTTAAGAGuCAsACTs consensus/80% ..TGT..........AuAA..uGAsGA...uG..GuCA..ATTT.A...GAsTCsTAsTTTGTsGTTAAGAGuCAsACTs consensus/70% ..TGT..........AuAA..uGAsGA...uG..GuCA..ATTT.A...GAsTCsTAsTTTGTsGTTAAGAGuCAsACTs cov pid 18001 . . . . : . . . 18080 1 2019nCoV 100.0% 100.0% tctct----aactaccaacatgaagaaacaat-ttataatttacttaag-gattgtccagctgttgctaa------acat 2 SARS 95.5% 77.9% tgtct----aactaccaacatgaagagactat-ttataacttggttaaa-gattgtccagcggttgctgt------ccat 3 MERS 74.7% 47.2% ----tggagaattatgaac-tagagaagcactgttacgacttg-ttacgtgactgt------gatgctgtagctccccat consensus/100% ....T....AAsTAssAAC.TuuAGAuuCssT.TTAsuAsTTu.TTAsu.GAsTGT......GsTGCTus......sCAT consensus/90% ....T....AAsTAssAAC.TuuAGAuuCssT.TTAsuAsTTu.TTAsu.GAsTGT......GsTGCTus......sCAT consensus/80% ....T....AAsTAssAAC.TuuAGAuuCssT.TTAsuAsTTu.TTAsu.GAsTGT......GsTGCTus......sCAT consensus/70% ....T....AAsTAssAAC.TuuAGAuuCssT.TTAsuAsTTu.TTAsu.GAsTGT......GsTGCTus......sCAT cov pid 18081 . 1 . . . . : . 18160 1 2019nCoV 100.0% 100.0% gacttctttaagtttagaatagacggt-gacatggt------accacatatat-cacgtcaacgtcttactaaatacaca 2 SARS 95.5% 77.9% gactttttcaagtttagagtagatggt-gacatggt------accacatatat-cacgtcagcgtctaactaaatacaca 3 MERS 74.7% 47.2% gatttcttcatcttt------gatg-tagacaaagttaaaacacctcatat-tgtacgtcagcgtttaactgagtacact consensus/100% GAsTTsTTsAssTTT......GAsG.T.GACAsuGT......ACCsCATAT.T.sACGTCAuCGTsTsACTuAuTACACs consensus/90% GAsTTsTTsAssTTT......GAsG.T.GACAsuGT......ACCsCATAT.T.sACGTCAuCGTsTsACTuAuTACACs consensus/80% GAsTTsTTsAssTTT......GAsG.T.GACAsuGT......ACCsCATAT.T.sACGTCAuCGTsTsACTuAuTACACs consensus/70% GAsTTsTTsAssTTT......GAsG.T.GACAsuGT......ACCsCATAT.T.sACGTCAuCGTsTsACTuAuTACACs cov pid 18161 . . . 2 . . . . 18240 1 2019nCoV 100.0% 100.0% atggcagacctcgtctatgctttaaggcattttgatgaaggtaattgtgacacattaaaa----gaaatactt------- 2 SARS 95.5% 77.9% atggctgatttagtctatgctctacgtcattttgatgagggtaattgtgatacattaaaa----gaaatactc------- 3 MERS 74.7% 47.2% atgatggatcttgtatatgccctgaggcactttgat-------------------caaaatagcgaagtgcttaaggcta consensus/100% ATGussGAssTsGTsTATGCssTusGsCAsTTTGAT...................sAAAA....GAAuTuCTs....... consensus/90% ATGussGAssTsGTsTATGCssTusGsCAsTTTGAT...................sAAAA....GAAuTuCTs....... consensus/80% ATGussGAssTsGTsTATGCssTusGsCAsTTTGAT...................sAAAA....GAAuTuCTs....... consensus/70% ATGussGAssTsGTsTATGCssTusGsCAsTTTGAT...................sAAAA....GAAuTuCTs....... cov pid 18241 : . . . . 3 . . 18320 1 2019nCoV 100.0% 100.0% -----gtcacatacaattgttgtgatgatgattatttc---aataaaaaggact--ggtatgattttgtagaaaacccag 2 SARS 95.5% 77.9% -----gtcacatacaattgctgtgatgatgattatttc---aataagaaggatt--ggtatgacttcgtagagaatcctg 3 MERS 74.7% 47.2% tcttagtgaagtatggttgctgtgatgttacctactttgaaaataa-----actctggtttgattttgttgaaaatcc-- consensus/100% .....GTsAsuTAsuuTTGsTGTGATGsTussTAsTTs...AATAA.....AsT..GGTsTGAsTTsGTsGAuAAsCC.. consensus/90% .....GTsAsuTAsuuTTGsTGTGATGsTussTAsTTs...AATAA.....AsT..GGTsTGAsTTsGTsGAuAAsCC.. consensus/80% .....GTsAsuTAsuuTTGsTGTGATGsTussTAsTTs...AATAA.....AsT..GGTsTGAsTTsGTsGAuAAsCC.. consensus/70% .....GTsAsuTAsuuTTGsTGTGATGsTussTAsTTs...AATAA.....AsT..GGTsTGAsTTsGTsGAuAAsCC.. cov pid 18321 . . : . . . . 4 18400 1 2019nCoV 100.0% 100.0% ata-tattac--gcgt-----atacgccaacttaggtgaacgtgtacgccaagctttgttaaaaacagt-acaattctgt 2 SARS 95.5% 77.9% aca-tcttac--gcgt-----atatgctaacttaggtgagcgtgtacgccaatcattattaaagactgt-acaattctgc 3 MERS 74.7% 47.2% -cagtgttattggtgtttatcata----aactt-ggagaacgtgtacgccaagctatcttaaacactgtta-aattttgt consensus/100% .sA.TsTTAs..GsGT.....ATA....AACTT.GGsGAuCGTGTACGCCAAsCssTsTTAAAsACsGT.A.AATTsTGs consensus/90% .sA.TsTTAs..GsGT.....ATA....AACTT.GGsGAuCGTGTACGCCAAsCssTsTTAAAsACsGT.A.AATTsTGs consensus/80% .sA.TsTTAs..GsGT.....ATA....AACTT.GGsGAuCGTGTACGCCAAsCssTsTTAAAsACsGT.A.AATTsTGs consensus/70% .sA.TsTTAs..GsGT.....ATA....AACTT.GGsGAuCGTGTACGCCAAsCssTsTTAAAsACsGT.A.AATTsTGs cov pid 18401 . . . . : . . . 18480 1 2019nCoV 100.0% 100.0% gatgccatgcgaaat----gctggtatt-gttggtgtactgacattagataatcaagatctcaatggtaactggtatgat 2 SARS 95.5% 77.9% gatgctatgcgtgat----gcaggcatt-gtaggcgtactgacattagataatcaggatcttaatgggaactggtacgat 3 MERS 74.7% 47.2% ga--cca--catggtcaaggctggt-ttagtcggtgtgctcacactagacaaccaggaccttaatggcaagtggtatgat consensus/100% GA..CsA..CusuuT....GCsGGs.TT.GTsGGsGTuCTsACAsTAGAsAAsCAuGAsCTsAATGGsAAsTGGTAsGAT consensus/90% GA..CsA..CusuuT....GCsGGs.TT.GTsGGsGTuCTsACAsTAGAsAAsCAuGAsCTsAATGGsAAsTGGTAsGAT consensus/80% GA..CsA..CusuuT....GCsGGs.TT.GTsGGsGTuCTsACAsTAGAsAAsCAuGAsCTsAATGGsAAsTGGTAsGAT consensus/70% GA..CsA..CusuuT....GCsGGs.TT.GTsGGsGTuCTsACAsTAGAsAAsCAuGAsCTsAATGGsAAsTGGTAsGAT cov pid 18481 . 5 . . . . : . 18560 1 2019nCoV 100.0% 100.0% ttcggtgatttcata------caaaccacgccaggtagtggagttcct---gttg-tag-----attcttattattcatt 2 SARS 95.5% 77.9% ttcggtgatttcgta------caagtagcaccaggctgcggagttcct---attg-tgg-----attcatattactcatt 3 MERS 74.7% 47.2% tttggtgacttcgtaatcactcaa------cctggttcaggagtagctatagttgatagctactattcttatt------- consensus/100% TTsGGTGAsTTCuTA......CAA......CCsGGssssGGAGTssCT...uTTG.TuG.....ATTCsTATT....... consensus/90% TTsGGTGAsTTCuTA......CAA......CCsGGssssGGAGTssCT...uTTG.TuG.....ATTCsTATT....... consensus/80% TTsGGTGAsTTCuTA......CAA......CCsGGssssGGAGTssCT...uTTG.TuG.....ATTCsTATT....... consensus/70% TTsGGTGAsTTCuTA......CAA......CCsGGssssGGAGTssCT...uTTG.TuG.....ATTCsTATT....... cov pid 18561 . . . 6 . . . . 18640 1 2019nCoV 100.0% 100.0% gttaatgcctatatta------acc--ttgaccagggctttaactgcagagtcacatgttgacactgacttaacaa--ag 2 SARS 95.5% 77.9% gctgatgcccatcctc------act--ttgactagggcattggctgctgagtcccatatggatgctgatctcgcaa--aa 3 MERS 74.7% 47.2% --tgatgcctgtgctctcaatgaccgattgtc--------tggccgctgagacacatagggattgtgattt--taataaa consensus/100% ..TuATGCCsuTssTs......ACs..TTGsC........TuuCsGCsGAGsCsCATussGAsssTGAssT..sAA..Au consensus/90% ..TuATGCCsuTssTs......ACs..TTGsC........TuuCsGCsGAGsCsCATussGAsssTGAssT..sAA..Au consensus/80% ..TuATGCCsuTssTs......ACs..TTGsC........TuuCsGCsGAGsCsCATussGAsssTGAssT..sAA..Au consensus/70% ..TuATGCCsuTssTs......ACs..TTGsC........TuuCsGCsGAGsCsCATussGAsssTGAssT..sAA..Au cov pid 18641 : . . . . 7 . . 18720 1 2019nCoV 100.0% 100.0% ccttac--attaagtgg-gatttgttaaaatatgacttcacgga-----agagag-----gttaaaactctttgaccg-- 2 SARS 95.5% 77.9% cc--acttattaagtgg-gatttgctgaaatatgattttacgga-----agagagactttgt-----ctcttcgaccg-- 3 MERS 74.7% 47.2% cc--actcattgagtggccacttactg-agtatgattttactgattataag---------gt-acaactctttga--gaa consensus/100% CC..AC..ATTuAGTGG.sAsTTusTu.AuTATGAsTTsACsGA.....AG.........GT.....CTCTTsGA..G.. consensus/90% CC..AC..ATTuAGTGG.sAsTTusTu.AuTATGAsTTsACsGA.....AG.........GT.....CTCTTsGA..G.. consensus/80% CC..AC..ATTuAGTGG.sAsTTusTu.AuTATGAsTTsACsGA.....AG.........GT.....CTCTTsGA..G.. consensus/70% CC..AC..ATTuAGTGG.sAsTTusTu.AuTATGAsTTsACsGA.....AG.........GT.....CTCTTsGA..G.. cov pid 18721 . . : . . . . 8 18800 1 2019nCoV 100.0% 100.0% ttattttaaatattgggatcagacataccacccaaattgtgttaactgt--ttggatgacagatgcattctgcattgtgc 2 SARS 95.5% 77.9% ttattttaaatattgggaccagacataccatcccaattgtattaactgt--ttggatgataggtgtatccttcattgtgc 3 MERS 74.7% 47.2% gtactttaaatattgggatcagacgtatcacgcaaattgcgttaattgtact--gatgaccgttgtgtgttacattgtgc consensus/100% sTAsTTTAAATATTGGGAsCAGACuTAsCAssCsAATTGsuTTAAsTGT..T..GATGAssGsTGsuTssTsCATTGTGC consensus/90% sTAsTTTAAATATTGGGAsCAGACuTAsCAssCsAATTGsuTTAAsTGT..T..GATGAssGsTGsuTssTsCATTGTGC consensus/80% sTAsTTTAAATATTGGGAsCAGACuTAsCAssCsAATTGsuTTAAsTGT..T..GATGAssGsTGsuTssTsCATTGTGC consensus/70% sTAsTTTAAATATTGGGAsCAGACuTAsCAssCsAATTGsuTTAAsTGT..T..GATGAssGsTGsuTssTsCATTGTGC cov pid 18801 . . . . : . . . 18880 1 2019nCoV 100.0% 100.0% aaactttaatgttttattctctacagtgttccca--cctacaa---gttttggaccac-tagtgagaaaaatatttgttg 2 SARS 95.5% 77.9% aaactttaatgtgttattttctactgtgtttcca--cctacaa---gttttggaccac-tagtaagaaaaatatttgtag 3 MERS 74.7% 47.2% taatttcaatgtattgtttgcta---tg--accatgcctaagacttgtttcggacc-catagtccgaaagatctttgttg consensus/100% sAAsTTsAATGTsTTuTTssCTA...TG..sCCA..CCTAsuA...GTTTsGGACC.C.TAGTssGAAAuATsTTTGTsG consensus/90% sAAsTTsAATGTsTTuTTssCTA...TG..sCCA..CCTAsuA...GTTTsGGACC.C.TAGTssGAAAuATsTTTGTsG consensus/80% sAAsTTsAATGTsTTuTTssCTA...TG..sCCA..CCTAsuA...GTTTsGGACC.C.TAGTssGAAAuATsTTTGTsG consensus/70% sAAsTTsAATGTsTTuTTssCTA...TG..sCCA..CCTAsuA...GTTTsGGACC.C.TAGTssGAAAuATsTTTGTsG cov pid 18881 . 9 . . . . : . 18960 1 2019nCoV 100.0% 100.0% atggtgttccatttgtagtttcaact---ggataccacttcagagagctaggtgttgtacataatca-------ggatgt 2 SARS 95.5% 77.9% atggtgttccttttgttgtttcaact---ggataccattttcgtgagttaggagtcgtacataatca-------ggatgt 3 MERS 74.7% 47.2% atggcgtgccatttgtagtatc---ttgtggttatcactacaaagaattagg--tt-----tagtcatgaatatggatgt consensus/100% ATGGsGTsCCsTTTGTsGTsTC...T...GGsTAsCAsTsssusGAusTAGG..Ts.....TAuTCA.......GGATGT consensus/90% ATGGsGTsCCsTTTGTsGTsTC...T...GGsTAsCAsTsssusGAusTAGG..Ts.....TAuTCA.......GGATGT consensus/80% ATGGsGTsCCsTTTGTsGTsTC...T...GGsTAsCAsTsssusGAusTAGG..Ts.....TAuTCA.......GGATGT consensus/70% ATGGsGTsCCsTTTGTsGTsTC...T...GGsTAsCAsTsssusGAusTAGG..Ts.....TAuTCA.......GGATGT cov pid 18961 . . . 0 . . . . 19040 1 2019nCoV 100.0% 100.0% aaactt------acatag-ctc---tagacttagttttaaggaattactt---g----tgtatgctgctgaccctgctat 2 SARS 95.5% 77.9% aaactt------acatag-ctcgcgt---ctcagtttcaaggaa---cttttag----tgtatgctgctgatccagctat 3 MERS 74.7% 47.2% tagtctccatagacataggctc---t---ctc----ttaaggag----tt---gatgatgtatgccgctgatccagccat consensus/100% sAussT......ACATAG.CTC...T...CTs....TsAAGGAu....TT...G....TGTATGCsGCTGAsCCsGCsAT consensus/90% sAussT......ACATAG.CTC...T...CTs....TsAAGGAu....TT...G....TGTATGCsGCTGAsCCsGCsAT consensus/80% sAussT......ACATAG.CTC...T...CTs....TsAAGGAu....TT...G....TGTATGCsGCTGAsCCsGCsAT consensus/70% sAussT......ACATAG.CTC...T...CTs....TsAAGGAu....TT...G....TGTATGCsGCTGAsCCsGCsAT cov pid 19041 : . . . . 1 . . 19120 1 2019nCoV 100.0% 100.0% gcacgctgcttctggtaatcta-----ttactagat------aaacgcactacgtgcttttcagta--gctgcacttact 2 SARS 95.5% 77.9% gcatgcagcttctggcaattta-----ttgctagat------aaacgcactacatgcttttcagta--gctgcactaaca 3 MERS 74.7% 47.2% gcacattgcctcc-----tctaacgcttttcttgatttgagga----cat--catg--ttttagtgtcgctgcacttac- consensus/100% GCAsussGCsTCs.....TsTA.....TTsCTsGAT......A....CAs..CuTG..TTTsAGTu..GCTGCACTsAC. consensus/90% GCAsussGCsTCs.....TsTA.....TTsCTsGAT......A....CAs..CuTG..TTTsAGTu..GCTGCACTsAC. consensus/80% GCAsussGCsTCs.....TsTA.....TTsCTsGAT......A....CAs..CuTG..TTTsAGTu..GCTGCACTsAC. consensus/70% GCAsussGCsTCs.....TsTA.....TTsCTsGAT......A....CAs..CuTG..TTTsAGTu..GCTGCACTsAC. cov pid 19121 . . : . . . . 2 19200 1 2019nCoV 100.0% 100.0% aacaatg--ttg-cttttcaaactgt-caaacccggtaattttaacaaagacttctatgactttgctgtgtctaagggtt 2 SARS 95.5% 77.9% aacaatg--ttg-cttttcaaactgt-caaacccggtaattttaataaagacttttatgactttgctgtgtctaaaggtt 3 MERS 74.7% 47.2% aac--tggtttgacttttcaaactgtgc-ggcctggcaattttaaccaagacttctatgatttcgtggtatctaaaggtt consensus/100% AAC..TG..TTG.CTTTTCAAACTGT.C.uuCCsGGsAATTTTAAssAAGACTTsTATGAsTTsGssGTuTCTAAuGGTT consensus/90% AAC..TG..TTG.CTTTTCAAACTGT.C.uuCCsGGsAATTTTAAssAAGACTTsTATGAsTTsGssGTuTCTAAuGGTT consensus/80% AAC..TG..TTG.CTTTTCAAACTGT.C.uuCCsGGsAATTTTAAssAAGACTTsTATGAsTTsGssGTuTCTAAuGGTT consensus/70% AAC..TG..TTG.CTTTTCAAACTGT.C.uuCCsGGsAATTTTAAssAAGACTTsTATGAsTTsGssGTuTCTAAuGGTT cov pid 19201 . . . . : . . . 19280 1 2019nCoV 100.0% 100.0% tctttaaggaaggaagttct---gttga-attaaaacacttcttctttgctcaggatggtaatgctgctat--cagcgat 2 SARS 95.5% 77.9% tctttaaggaaggaagttct---gttga-actaaaacacttcttctttgctcaggatggcaacgctgctat--cagtgat 3 MERS 74.7% 47.2% tctttaaggaggg---ctcttcagt-gacgctcaaacattttttctttgctcaagatggtaatgctgctattaca--gat consensus/100% TCTTTAAGGAuGG...sTCT...GT.GA.usTsAAACAsTTsTTCTTTGCTCAuGATGGsAAsGCTGCTAT..CA..GAT consensus/90% TCTTTAAGGAuGG...sTCT...GT.GA.usTsAAACAsTTsTTCTTTGCTCAuGATGGsAAsGCTGCTAT..CA..GAT consensus/80% TCTTTAAGGAuGG...sTCT...GT.GA.usTsAAACAsTTsTTCTTTGCTCAuGATGGsAAsGCTGCTAT..CA..GAT consensus/70% TCTTTAAGGAuGG...sTCT...GT.GA.usTsAAACAsTTsTTCTTTGCTCAuGATGGsAAsGCTGCTAT..CA..GAT cov pid 19281 . 3 . . . . : . 19360 1 2019nCoV 100.0% 100.0% tatgactactatcgttataatctaccaacaatgtgtgatatcagacaactactatttgtagtt-------gaagttgttg 2 SARS 95.5% 77.9% tatgactattatcgttataatctgccaacaatgtgtgatatcagacaactcctattcgtagtt-------gaagttgttg 3 MERS 74.7% 47.2% tataattactattcttataatctgcctactatgtgtgacatcaaacaa-----at--gttgttctgcatggaagttgtaa consensus/100% TATuAsTAsTATssTTATAATCTuCCsACsATGTGTGAsATCAuACAA.....AT..GTsGTT.......GAAGTTGTsu consensus/90% TATuAsTAsTATssTTATAATCTuCCsACsATGTGTGAsATCAuACAA.....AT..GTsGTT.......GAAGTTGTsu consensus/80% TATuAsTAsTATssTTATAATCTuCCsACsATGTGTGAsATCAuACAA.....AT..GTsGTT.......GAAGTTGTsu consensus/70% TATuAsTAsTATssTTATAATCTuCCsACsATGTGTGAsATCAuACAA.....AT..GTsGTT.......GAAGTTGTsu cov pid 19361 . . . 4 . . . . 19440 1 2019nCoV 100.0% 100.0% ataagtactttga--ttgttacgatggtggctgtattaatgctaacc--aagtcatcgtcaacaacctagacaaa--tca 2 SARS 95.5% 77.9% ataaatactttga--ttgttacgatggtggctgtattaatgccaacc--aagtaatcgttaacaatctggataaa--tca 3 MERS 74.7% 47.2% acaagtacttcgaaat--ctatgacggtggttgtcttaatgct--tctgaagtggttgttaataatttagacaagagt-- consensus/100% AsAAuTACTTsGA..T..sTAsGAsGGTGGsTGTsTTAATGCs..sC..AAGTsuTsGTsAAsAAssTuGAsAAu..T.. consensus/90% AsAAuTACTTsGA..T..sTAsGAsGGTGGsTGTsTTAATGCs..sC..AAGTsuTsGTsAAsAAssTuGAsAAu..T.. consensus/80% AsAAuTACTTsGA..T..sTAsGAsGGTGGsTGTsTTAATGCs..sC..AAGTsuTsGTsAAsAAssTuGAsAAu..T.. consensus/70% AsAAuTACTTsGA..T..sTAsGAsGGTGGsTGTsTTAATGCs..sC..AAGTsuTsGTsAAsAAssTuGAsAAu..T.. cov pid 19441 : . . . . 5 . . 19520 1 2019nCoV 100.0% 100.0% gctggttttcca----tttaataaatggggtaaggctagac---tttattatgattcaatgag------ttatgaggatc 2 SARS 95.5% 77.9% gctggtttccca----tttaataaatggggtaaggctagac---tttattatgactcaatgag------ttatgaggatc 3 MERS 74.7% 47.2% gctgg----ccatccttttaataagtttggcaaagct---cgtgtctattatga------gagcatgtcttaccaggagc consensus/100% GCTGG....CCA....TTTAATAAuTssGGsAAuGCT...C...TsTATTATGA......GAG......TTAssAGGAsC consensus/90% GCTGG....CCA....TTTAATAAuTssGGsAAuGCT...C...TsTATTATGA......GAG......TTAssAGGAsC consensus/80% GCTGG....CCA....TTTAATAAuTssGGsAAuGCT...C...TsTATTATGA......GAG......TTAssAGGAsC consensus/70% GCTGG....CCA....TTTAATAAuTssGGsAAuGCT...C...TsTATTATGA......GAG......TTAssAGGAsC cov pid 19521 . . : . . . . 6 19600 1 2019nCoV 100.0% 100.0% aagatgcacttttcgcatat-acaaaacgtaatgtcatccctactataactcaaatgaatcttaagtatgccattagtgc 2 SARS 95.5% 77.9% aagatgcacttttcgcgtat-actaagcgtaatgtcatccctactataactcaaatgaatcttaagtatgccattagtgc 3 MERS 74.7% 47.2% aagatgaactttttgc-catgacaaagcgtaacgtcattcctaccatgactcaaatgaatctaaaatatgctattagtgc consensus/100% AAGATGsACTTTTsGC.sAT.ACsAAuCGTAAsGTCATsCCTACsATuACTCAAATGAATCTsAAuTATGCsATTAGTGC consensus/90% AAGATGsACTTTTsGC.sAT.ACsAAuCGTAAsGTCATsCCTACsATuACTCAAATGAATCTsAAuTATGCsATTAGTGC consensus/80% AAGATGsACTTTTsGC.sAT.ACsAAuCGTAAsGTCATsCCTACsATuACTCAAATGAATCTsAAuTATGCsATTAGTGC consensus/70% AAGATGsACTTTTsGC.sAT.ACsAAuCGTAAsGTCATsCCTACsATuACTCAAATGAATCTsAAuTATGCsATTAGTGC cov pid 19601 . . . . : . . . 19680 1 2019nCoV 100.0% 100.0% aaagaatagagctcgcaccgtagctggtgtctctat-ctgtagtactatgaccaatagacagtttcatcaaaaattattg 2 SARS 95.5% 77.9% aaagaatagagctcgcaccgtagctggtgtctctat-ctgtagtactatgacaaatagacagtttcatcagaaattattg 3 MERS 74.7% 47.2% taagaatagagctcgcactgttgcaggcgtgtccatact-tagcacaatgactaatcgccagtaccatcagaaaatgctt consensus/100% sAAGAATAGAGCTCGCACsGTsGCsGGsGTsTCsAT.CT.TAGsACsATGACsAATsGsCAGTssCATCAuAAAsTusTs consensus/90% sAAGAATAGAGCTCGCACsGTsGCsGGsGTsTCsAT.CT.TAGsACsATGACsAATsGsCAGTssCATCAuAAAsTusTs consensus/80% sAAGAATAGAGCTCGCACsGTsGCsGGsGTsTCsAT.CT.TAGsACsATGACsAATsGsCAGTssCATCAuAAAsTusTs consensus/70% sAAGAATAGAGCTCGCACsGTsGCsGGsGTsTCsAT.CT.TAGsACsATGACsAATsGsCAGTssCATCAuAAAsTusTs cov pid 19681 . 7 . . . . : . 19760 1 2019nCoV 100.0% 100.0% aaatcaatagccgccactagaggagctactgta-gtaattgg-a--acaagcaaattctatggtggttggcacaacatg- 2 SARS 95.5% 77.9% aagtcaatagccgccactagaggagctactgtg-gtaattgg-a--acaagcaagttttacggtggctggcataatatg- 3 MERS 74.7% 47.2% aagtccatggctgcaactcgtggagcgact-tgcgtcattggtactacaa---agttctacggtggctgggatttcatgc consensus/100% AAuTCsATuGCsGCsACTsGsGGAGCsACT.Tu.GTsATTGG.A..ACAA...AuTTsTAsGGTGGsTGGsAssssATG. consensus/90% AAuTCsATuGCsGCsACTsGsGGAGCsACT.Tu.GTsATTGG.A..ACAA...AuTTsTAsGGTGGsTGGsAssssATG. consensus/80% AAuTCsATuGCsGCsACTsGsGGAGCsACT.Tu.GTsATTGG.A..ACAA...AuTTsTAsGGTGGsTGGsAssssATG. consensus/70% AAuTCsATuGCsGCsACTsGsGGAGCsACT.Tu.GTsATTGG.A..ACAA...AuTTsTAsGGTGGsTGGsAssssATG. cov pid 19761 . . . 8 . . . . 19840 1 2019nCoV 100.0% 100.0% ttaaaa-actgtttatagtgatgtagaaaaccctcaccttatgggttgggattatcctaaatgtgatagagccatgccta 2 SARS 95.5% 77.9% ttaaaa-actgtttacagtgatgtagaaactccacaccttatgggttgggattatccaaaatgtgacagagccatgccta 3 MERS 74.7% 47.2% ttaaaacattg--tacaaagatgttgataatccgcatcttatgggttgggattaccctaagtgtgatagagctatgccta consensus/100% TTAAAA.AsTG..TAsAusGATGTsGAsAssCCsCAsCTTATGGGTTGGGATTAsCCsAAuTGTGAsAGAGCsATGCCTA consensus/90% TTAAAA.AsTG..TAsAusGATGTsGAsAssCCsCAsCTTATGGGTTGGGATTAsCCsAAuTGTGAsAGAGCsATGCCTA consensus/80% TTAAAA.AsTG..TAsAusGATGTsGAsAssCCsCAsCTTATGGGTTGGGATTAsCCsAAuTGTGAsAGAGCsATGCCTA consensus/70% TTAAAA.AsTG..TAsAusGATGTsGAsAssCCsCAsCTTATGGGTTGGGATTAsCCsAAuTGTGAsAGAGCsATGCCTA cov pid 19841 : . . . . 9 . . 19920 1 2019nCoV 100.0% 100.0% acatgcttagaattatggcctcacttgttcttgctcgcaaacata-caacgtgttgtagcttgtcac-----accgtttc 2 SARS 95.5% 77.9% acatgcttaggataatggcctctcttgttcttgctcgcaaacataac-acttgctgtaacttatcac-----accgtttc 3 MERS 74.7% 47.2% atatgtgtagaatcttcgcttcactcatattagctcgtaaacatggc-acttgttgta-ct----acaagggacagattt consensus/100% AsATGssTAGuATssTsGCsTCsCTsuTssTsGCTCGsAAACATu.C.ACsTGsTGTA.CT....AC.....ACsGsTTs consensus/90% AsATGssTAGuATssTsGCsTCsCTsuTssTsGCTCGsAAACATu.C.ACsTGsTGTA.CT....AC.....ACsGsTTs consensus/80% AsATGssTAGuATssTsGCsTCsCTsuTssTsGCTCGsAAACATu.C.ACsTGsTGTA.CT....AC.....ACsGsTTs consensus/70% AsATGssTAGuATssTsGCsTCsCTsuTssTsGCTCGsAAACATu.C.ACsTGsTGTA.CT....AC.....ACsGsTTs cov pid 19921 . . : . . . . 0 20000 1 2019nCoV 100.0% 100.0% tatagattagctaatgagtgtgctcaagtattgagtgaa-atggtc-atgtg-tggcggttcactatatgttaaacc--- 2 SARS 95.5% 77.9% tacaggttagctaacgagtgtgcgcaagtattaagtgag-atggtc-atgtg-tggcggctcactatatgttaaacc--- 3 MERS 74.7% 47.2% tatcgcttggcaaatgagtgtgctcaggtgctaagcgaatatgttctatgtggtggtggtt-ac--tacgtcaaacctgg consensus/100% TAssGsTTuGCsAAsGAGTGTGCsCAuGTusTuAGsGAu.ATGsTC.ATGTG.TGGsGGsT.AC..TAsGTsAAACC... consensus/90% TAssGsTTuGCsAAsGAGTGTGCsCAuGTusTuAGsGAu.ATGsTC.ATGTG.TGGsGGsT.AC..TAsGTsAAACC... consensus/80% TAssGsTTuGCsAAsGAGTGTGCsCAuGTusTuAGsGAu.ATGsTC.ATGTG.TGGsGGsT.AC..TAsGTsAAACC... consensus/70% TAssGsTTuGCsAAsGAGTGTGCsCAuGTusTuAGsGAu.ATGsTC.ATGTG.TGGsGGsT.AC..TAsGTsAAACC... cov pid 20001 . . . . : . . . 20080 1 2019nCoV 100.0% 100.0% aggtggaacctcatc-----aggagatgccacaactgcttatgctaatagtgtttttaacattt-gtcaagctgtcacg- 2 SARS 95.5% 77.9% aggtggaacatcatc-----cggtgatgctacaactgcttatgctaatagtgtctttaacattt-gtcaagctgttaca- 3 MERS 74.7% 47.2% aggt--------accagtagcggagatgccaccactgcatatgccaatagtgtctttaacattttg-caggc-g--acaa consensus/100% AGGT........AsC.....sGGsGATGCsACsACTGCsTATGCsAATAGTGTsTTTAACATTT.G.CAuGC.G..ACu. consensus/90% AGGT........AsC.....sGGsGATGCsACsACTGCsTATGCsAATAGTGTsTTTAACATTT.G.CAuGC.G..ACu. consensus/80% AGGT........AsC.....sGGsGATGCsACsACTGCsTATGCsAATAGTGTsTTTAACATTT.G.CAuGC.G..ACu. consensus/70% AGGT........AsC.....sGGsGATGCsACsACTGCsTATGCsAATAGTGTsTTTAACATTT.G.CAuGC.G..ACu. cov pid 20081 . 1 . . . . : . 20160 1 2019nCoV 100.0% 100.0% --gccaatgttaatgcacttttatcta------ctgatggtaacaaaattgccgat----aagt-------atgtccgca 2 SARS 95.5% 77.9% --gccaatgtaaatgcacttctttcaa------ctgatggtaataagatagctgac----aagt-------atgtccgca 3 MERS 74.7% 47.2% ctgctaatgtcagtgcactt------atgggtgctaatggcaacaagattgttgacaaagaagttaaagacat----gca consensus/100% ..GCsAATGTsAuTGCACTT......A......CTuATGGsAAsAAuATsGssGAs....AAGT.......AT....GCA consensus/90% ..GCsAATGTsAuTGCACTT......A......CTuATGGsAAsAAuATsGssGAs....AAGT.......AT....GCA consensus/80% ..GCsAATGTsAuTGCACTT......A......CTuATGGsAAsAAuATsGssGAs....AAGT.......AT....GCA consensus/70% ..GCsAATGTsAuTGCACTT......A......CTuATGGsAAsAAuATsGssGAs....AAGT.......AT....GCA cov pid 20161 . . . 2 . . . . 20240 1 2019nCoV 100.0% 100.0% atttacaacacagactt-tatg--agtgtctctatagaaa---tag---agatgttgacaca-gactttgtgaatgagtt 2 SARS 95.5% 77.9% atctacaacacaggctc-tatg--agtgtctctatagaaa---tag---ggatgttgat-catgaattcgtggatgagtt 3 MERS 74.7% 47.2% gttt--------gatttgtatgtcaatgttt--acaggagcactagcccagac-----ccca--aatttgttgataaata consensus/100% uTsT........GusTs.TATG..AuTGTsT..AsAGuAu...TAG...uGAs.....s.CA..AsTTsGTsuATuAuTs consensus/90% uTsT........GusTs.TATG..AuTGTsT..AsAGuAu...TAG...uGAs.....s.CA..AsTTsGTsuATuAuTs consensus/80% uTsT........GusTs.TATG..AuTGTsT..AsAGuAu...TAG...uGAs.....s.CA..AsTTsGTsuATuAuTs consensus/70% uTsT........GusTs.TATG..AuTGTsT..AsAGuAu...TAG...uGAs.....s.CA..AsTTsGTsuATuAuTs cov pid 20241 : . . . . 3 . . 20320 1 2019nCoV 100.0% 100.0% ttacgcatatttgcgtaaacatttctcaatgatgatactctctgacgatgctgttgtgtgtttcaatagcacttatgcat 2 SARS 95.5% 77.9% ttacgcttacctgcgtaaacatttctccatgatgattctttctgatgatgccgttgtgtgctataacagtaactatgcgg 3 MERS 74.7% 47.2% ctatgcttttcttaataagcacttttctatgatgatactgtctgatgacggtgtcgtttgctataatagtgattatgcag consensus/100% sTAsGCsTsssTssuTAAuCAsTTsTCsATGATGATsCTsTCTGAsGAsGssGTsGTsTGsTssAAsAGsussTATGCus consensus/90% sTAsGCsTsssTssuTAAuCAsTTsTCsATGATGATsCTsTCTGAsGAsGssGTsGTsTGsTssAAsAGsussTATGCus consensus/80% sTAsGCsTsssTssuTAAuCAsTTsTCsATGATGATsCTsTCTGAsGAsGssGTsGTsTGsTssAAsAGsussTATGCus consensus/70% sTAsGCsTsssTssuTAAuCAsTTsTCsATGATGATsCTsTCTGAsGAsGssGTsGTsTGsTssAAsAGsussTATGCus cov pid 20321 . . : . . . . 4 20400 1 2019nCoV 100.0% 100.0% ctcaaggtcta-gtggctagcataaagaactttaagtcagttctttattatcaaaacaatgtttttatgtctgaagcaaa 2 SARS 95.5% 77.9% ctcaaggttta-gtagctagcattaagaactttaaggcagttctttattatcaaaataatgtgttcatgtctgaggcaaa 3 MERS 74.7% 47.2% ct-aagggttacattgctggaatacagaattttaaggaaacgctgtattatcagaacaatgtctttatgtctgaagctaa consensus/100% CT.AAGGssTA.uTsGCTuGsATssAGAAsTTTAAGssAussCTsTATTATCAuAAsAATGTsTTsATGTCTGAuGCsAA consensus/90% CT.AAGGssTA.uTsGCTuGsATssAGAAsTTTAAGssAussCTsTATTATCAuAAsAATGTsTTsATGTCTGAuGCsAA consensus/80% CT.AAGGssTA.uTsGCTuGsATssAGAAsTTTAAGssAussCTsTATTATCAuAAsAATGTsTTsATGTCTGAuGCsAA consensus/70% CT.AAGGssTA.uTsGCTuGsATssAGAAsTTTAAGssAussCTsTATTATCAuAAsAATGTsTTsATGTCTGAuGCsAA cov pid 20401 . . . . : . . . 20480 1 2019nCoV 100.0% 100.0% atgttggactgagactgaccttactaaaggacctcatgaattttgctctcaacatacaatgctagtta-aacagggt--- 2 SARS 95.5% 77.9% atgttggactgagactgaccttactaaaggacctcacgaattttgctcacagcatacaatgctagtta-aacaagga--- 3 MERS 74.7% 47.2% atgctgggtggaaaccgatctgaagaaagggccacatgaattctgttcacagcatac---gct--ttatattaaggatgg consensus/100% ATGsTGGussGAuACsGAsCTsAssAAAGGuCCsCAsGAATTsTGsTCsCAuCATAC...GCT..TTA.AssAuGGs... consensus/90% ATGsTGGussGAuACsGAsCTsAssAAAGGuCCsCAsGAATTsTGsTCsCAuCATAC...GCT..TTA.AssAuGGs... consensus/80% ATGsTGGussGAuACsGAsCTsAssAAAGGuCCsCAsGAATTsTGsTCsCAuCATAC...GCT..TTA.AssAuGGs... consensus/70% ATGsTGGussGAuACsGAsCTsAssAAAGGuCCsCAsGAATTsTGsTCsCAuCATAC...GCT..TTA.AssAuGGs... cov pid 20481 . 5 . . . . : . 20560 1 2019nCoV 100.0% 100.0% ----gatgattatgtgtaccttccttacccagatccatcaagaatcctaggg--gccggctgttttgtagatgatatcgt 2 SARS 95.5% 77.9% ----gatgattacgtgtacctgccttacccagatccatcaagaatattaggc--gcaggctgttttgtcgatgatattgt 3 MERS 74.7% 47.2% cgacgatggttactt---ccttccttatccagacccttcaagaatttt--gtctgccggttgctttgtagatgatatcgt consensus/100% ....GATGuTTAssT...CCTsCCTTAsCCAGAsCCsTCAAGAATssT..Gs..GCsGGsTGsTTTGTsGATGATATsGT consensus/90% ....GATGuTTAssT...CCTsCCTTAsCCAGAsCCsTCAAGAATssT..Gs..GCsGGsTGsTTTGTsGATGATATsGT consensus/80% ....GATGuTTAssT...CCTsCCTTAsCCAGAsCCsTCAAGAATssT..Gs..GCsGGsTGsTTTGTsGATGATATsGT consensus/70% ....GATGuTTAssT...CCTsCCTTAsCCAGAsCCsTCAAGAATssT..Gs..GCsGGsTGsTTTGTsGATGATATsGT cov pid 20561 . . . 6 . . . . 20640 1 2019nCoV 100.0% 100.0% aaaaacagatggtacacttatgattgaacggttcgtgtctttagctatagatgcttacccacttactaaacatcct---- 2 SARS 95.5% 77.9% caaaacagatggtacacttatgattgaaaggttcgtgtcactggctattgatgcttacccacttacaaaacatcct---- 3 MERS 74.7% 47.2% taagactgacggtacactcatggtagagcggtttgtgtctttggctatagatgcttaccctctcacaaagca---tgaag consensus/100% sAAuACsGAsGGTACACTsATGuTsGAusGGTTsGTGTCssTuGCTATsGATGCTTACCCsCTsACsAAuCA...T.... consensus/90% sAAuACsGAsGGTACACTsATGuTsGAusGGTTsGTGTCssTuGCTATsGATGCTTACCCsCTsACsAAuCA...T.... consensus/80% sAAuACsGAsGGTACACTsATGuTsGAusGGTTsGTGTCssTuGCTATsGATGCTTACCCsCTsACsAAuCA...T.... consensus/70% sAAuACsGAsGGTACACTsATGuTsGAusGGTTsGTGTCssTuGCTATsGATGCTTACCCsCTsACsAAuCA...T.... cov pid 20641 : . . . . 7 . . 20720 1 2019nCoV 100.0% 100.0% ------aat--cagga-gtatgctgatgtctttcatttgtacttacaatacataagaaagctacatgatgagttaacagg 2 SARS 95.5% 77.9% ------aat--cagga-gtatgctgatgtctttcacttgtatttacaatacattagaaagttacatgatgagcttactgg 3 MERS 74.7% 47.2% atatagaataccagaatgtattctgg-gtc---------tacttacagtatatagaaaaactgtataaagaccttacagg consensus/100% ......AAT..CAGuA.GTATsCTGu.GTC.........TAsTTACAuTAsATsuuAAAusTusATuAsGAssTsACsGG consensus/90% ......AAT..CAGuA.GTATsCTGu.GTC.........TAsTTACAuTAsATsuuAAAusTusATuAsGAssTsACsGG consensus/80% ......AAT..CAGuA.GTATsCTGu.GTC.........TAsTTACAuTAsATsuuAAAusTusATuAsGAssTsACsGG consensus/70% ......AAT..CAGuA.GTATsCTGu.GTC.........TAsTTACAuTAsATsuuAAAusTusATuAsGAssTsACsGG cov pid 20721 . . : . . . . 8 20800 1 2019nCoV 100.0% 100.0% acacatgttagacatg-tattctgttatgcttac-taatgataacacttc----aaggtattgggaacctgag---tttt 2 SARS 95.5% 77.9% ccacatgttggacatg-tattccgtaatgctaac-taatgataacacctc----acggtactgggaacctgag---tttt 3 MERS 74.7% 47.2% acacatgcttgaca-gttattctgtcatgct-atgtggtgataa---ttctgctaagtt-ttgggaa---gaggcattct consensus/100% sCACATGsTsGACA.G.TATTCsGTsATGCT.As.TuuTGATAA...sTC....AsGsT.sTGGGAA...GAG...TTsT consensus/90% sCACATGsTsGACA.G.TATTCsGTsATGCT.As.TuuTGATAA...sTC....AsGsT.sTGGGAA...GAG...TTsT consensus/80% sCACATGsTsGACA.G.TATTCsGTsATGCT.As.TuuTGATAA...sTC....AsGsT.sTGGGAA...GAG...TTsT consensus/70% sCACATGsTsGACA.G.TATTCsGTsATGCT.As.TuuTGATAA...sTC....AsGsT.sTGGGAA...GAG...TTsT cov pid 20801 . . . . : . . . 20880 1 2019nCoV 100.0% 100.0% at-gagg---ctat-gtacac--accgcatacagtcttacaggctgttggggcttgtgttctttgcaattcacagacttc 2 SARS 95.5% 77.9% at-gagg---ctat-gtacac--accacatacagtcttgcaggctgtaggtgcttgtgtattgtgcaattcacagacttc 3 MERS 74.7% 47.2% atagagatctctatagttcgcctaccac-------tttgcaggctgtcggttcatgcgttgtatgccattcacagacttc consensus/100% AT.GAGu...CTAT.GTsCuC..ACCuC.......sTTuCAGGCTGTsGGssCsTGsGTssTsTGCsATTCACAGACTTC consensus/90% AT.GAGu...CTAT.GTsCuC..ACCuC.......sTTuCAGGCTGTsGGssCsTGsGTssTsTGCsATTCACAGACTTC consensus/80% AT.GAGu...CTAT.GTsCuC..ACCuC.......sTTuCAGGCTGTsGGssCsTGsGTssTsTGCsATTCACAGACTTC consensus/70% AT.GAGu...CTAT.GTsCuC..ACCuC.......sTTuCAGGCTGTsGGssCsTGsGTssTsTGCsATTCACAGACTTC cov pid 20881 . 9 . . . . : . 20960 1 2019nCoV 100.0% 100.0% attaagatgtggtgcttgcatacgt---agaccattcttatgttgtaaatgctgttacgaccatgtcatatcaacatcac 2 SARS 95.5% 77.9% acttcgttgcggtgcctgtat---taggagaccattcctatgttgcaagtgctgctatgaccatgtcatttcaacatcac 3 MERS 74.7% 47.2% cctacgctgtgggacatgcatccgt---agaccatttctctgctgtaaatgctgctatgatcatgttatagcaactccac consensus/100% ssTssGsTGsGGsuCsTGsAT...T...AGACCATTssTsTGsTGsAAuTGCTGsTAsGAsCATGTsATssCAACssCAC consensus/90% ssTssGsTGsGGsuCsTGsAT...T...AGACCATTssTsTGsTGsAAuTGCTGsTAsGAsCATGTsATssCAACssCAC consensus/80% ssTssGsTGsGGsuCsTGsAT...T...AGACCATTssTsTGsTGsAAuTGCTGsTAsGAsCATGTsATssCAACssCAC consensus/70% ssTssGsTGsGGsuCsTGsAT...T...AGACCATTssTsTGsTGsAAuTGCTGsTAsGAsCATGTsATssCAACssCAC cov pid 20961 . . . 0 . . . . 21040 1 2019nCoV 100.0% 100.0% ataaattagtcttgtctgttaatccgtatgtttgcaatgctccaggttgtgatgtcacagatgtgactcaactttactta 2 SARS 95.5% 77.9% acaaattagtgttgtctgttaatccctatgtttgcaatgccccaggttgtgatgtcactgatgtgacacaactgtatcta 3 MERS 74.7% 47.2% ataagatggttttgtctgtttctccttacgtttgtaatgcccctggttgtggcgtttcagacgttactaagctatattta consensus/100% AsAAusTuGTsTTGTCTGTTssTCCsTAsGTTTGsAATGCsCCsGGTTGTGusGTssCsGAsGTsACssAuCTsTAssTA consensus/90% AsAAusTuGTsTTGTCTGTTssTCCsTAsGTTTGsAATGCsCCsGGTTGTGusGTssCsGAsGTsACssAuCTsTAssTA consensus/80% AsAAusTuGTsTTGTCTGTTssTCCsTAsGTTTGsAATGCsCCsGGTTGTGusGTssCsGAsGTsACssAuCTsTAssTA consensus/70% AsAAusTuGTsTTGTCTGTTssTCCsTAsGTTTGsAATGCsCCsGGTTGTGusGTssCsGAsGTsACssAuCTsTAssTA cov pid 21041 : . . . . 1 . . 21120 1 2019nCoV 100.0% 100.0% ggaggtatgagctattattgt--aaatcacataaaccacccat-----tagttttccattgtgtgctaatggacaagtt- 2 SARS 95.5% 77.9% ggaggtatgagctattattgc--aagtcacataagcctcccat-----tagttttccattatgtgctaatggtcaggtt- 3 MERS 74.7% 47.2% ggtggtatgagctacttttgtgtagat--catagacc-----tgtgtgtagttttccactttgcgctaatggtc---ttg consensus/100% GGsGGTATGAGCTAsTsTTGs..AuuT..CATAuuCC.....T.....TAGTTTTCCAsTsTGsGCTAATGGsC...TT. consensus/90% GGsGGTATGAGCTAsTsTTGs..AuuT..CATAuuCC.....T.....TAGTTTTCCAsTsTGsGCTAATGGsC...TT. consensus/80% GGsGGTATGAGCTAsTsTTGs..AuuT..CATAuuCC.....T.....TAGTTTTCCAsTsTGsGCTAATGGsC...TT. consensus/70% GGsGGTATGAGCTAsTsTTGs..AuuT..CATAuuCC.....T.....TAGTTTTCCAsTsTGsGCTAATGGsC...TT. cov pid 21121 . . : . . . . 2 21200 1 2019nCoV 100.0% 100.0% --tttggtttatataaaaatacatgtgttggtag-----cgataatgttactgactttaatgcaa---ttgcaacatgtg 2 SARS 95.5% 77.9% --tttggtttatacaaaaacacatgtgtaggcag-----tgacaatgtcactgacttcaatgcga---tagcaacatgtg 3 MERS 74.7% 47.2% tattcggcttatacaagaatatgtgcacaggtagtccttctatagt-----tgaatttaat---aggttggctacctgtg consensus/100% ..TTsGGsTTATAsAAuAAsAsuTGsussGGsAG.....ssAsAuT.....TGAsTTsAAT...A...TsGCsACsTGTG consensus/90% ..TTsGGsTTATAsAAuAAsAsuTGsussGGsAG.....ssAsAuT.....TGAsTTsAAT...A...TsGCsACsTGTG consensus/80% ..TTsGGsTTATAsAAuAAsAsuTGsussGGsAG.....ssAsAuT.....TGAsTTsAAT...A...TsGCsACsTGTG consensus/70% ..TTsGGsTTATAsAAuAAsAsuTGsussGGsAG.....ssAsAuT.....TGAsTTsAAT...A...TsGCsACsTGTG cov pid 21201 . . . . : . . . 21280 1 2019nCoV 100.0% 100.0% actggaca-aatgctggtgattacat--tttagctaacacctgtactgaa-aga----ctcaagctttttgcagcagaa- 2 SARS 95.5% 77.9% attggact-aatgctggcgattacatactt--gccaacacttgtactgag-aga----ctcaagcttttcgcagcagaa- 3 MERS 74.7% 47.2% actggactgaaag-tggtgattacaccctt--gccaatac---tac--aacagaaccactcaaactttttgctgctgaga consensus/100% AsTGGACs.AAsG.TGGsGATTACAs..TT..GCsAAsAC...TAC..Au.AGA....CTCAAuCTTTTsGCsGCsGAu. consensus/90% AsTGGACs.AAsG.TGGsGATTACAs..TT..GCsAAsAC...TAC..Au.AGA....CTCAAuCTTTTsGCsGCsGAu. consensus/80% AsTGGACs.AAsG.TGGsGATTACAs..TT..GCsAAsAC...TAC..Au.AGA....CTCAAuCTTTTsGCsGCsGAu. consensus/70% AsTGGACs.AAsG.TGGsGATTACAs..TT..GCsAAsAC...TAC..Au.AGA....CTCAAuCTTTTsGCsGCsGAu. cov pid 21281 . 3 . . . . : . 21360 1 2019nCoV 100.0% 100.0% ----acgctcaaagctactgaggagacatttaaactgtcttatggtattgctactgtacgtgaagtgctgtctgacagag 2 SARS 95.5% 77.9% ----acgctcaaagccactgaggaaacatttaagctgtcatatggtattgccactgtacgcgaagtactctctgacagag 3 MERS 74.7% 47.2% ctttacgt-----gccactgaagaggcgtctaagcagtcttatgctattgccaccat------------------caaag consensus/100% ....ACGs.....GCsACTGAuGAuuCuTsTAAuCsGTCsTATGsTATTGCsACsuT..................CAuAG consensus/90% ....ACGs.....GCsACTGAuGAuuCuTsTAAuCsGTCsTATGsTATTGCsACsuT..................CAuAG consensus/80% ....ACGs.....GCsACTGAuGAuuCuTsTAAuCsGTCsTATGsTATTGCsACsuT..................CAuAG consensus/70% ....ACGs.....GCsACTGAuGAuuCuTsTAAuCsGTCsTATGsTATTGCsACsuT..................CAuAG cov pid 21361 . . . 4 . . . . 21440 1 2019nCoV 100.0% 100.0% aa----tta--------catctttca------tgggaagttggtaaacctagaccaccacttaaccgaaattatgtcttt 2 SARS 95.5% 77.9% aa----ttg--------catctttca------tgggaggttggaaaacctagaccaccattgaacagaaactatgtcttt 3 MERS 74.7% 47.2% aaattgttggtgagcgccaactattacttgtgtgggaggctggcaagtccaaaccaccactcaatcgtaattatgttttt consensus/100% AA....TTu........CAsCTsTsA......TGGGAuGsTGGsAAusCsAuACCACCAsTsAAssGsAAsTATGTsTTT consensus/90% AA....TTu........CAsCTsTsA......TGGGAuGsTGGsAAusCsAuACCACCAsTsAAssGsAAsTATGTsTTT consensus/80% AA....TTu........CAsCTsTsA......TGGGAuGsTGGsAAusCsAuACCACCAsTsAAssGsAAsTATGTsTTT consensus/70% AA....TTu........CAsCTsTsA......TGGGAuGsTGGsAAusCsAuACCACCAsTsAAssGsAAsTATGTsTTT cov pid 21441 : . . . . 5 . . 21520 1 2019nCoV 100.0% 100.0% actggttatcgtgtaactaaaaacagtaaagtacaaataggagagtacacctttgaaaaagg-----tgactatggtgat 2 SARS 95.5% 77.9% actggttaccgtgtaactaaaaatagtaaagtacagattggagagtacacctttgaaaaagg-----tgactatggtgat 3 MERS 74.7% 47.2% actggttatcatataaccaaaaatagtaaagtgcagctcggtgagtacattttcga-----gcgcattgattatagtgat consensus/100% ACTGGTTAsCuTuTAACsAAAAAsAGTAAAGTuCAusTsGGsGAGTACAssTTsGA.....G.....TGAsTATuGTGAT consensus/90% ACTGGTTAsCuTuTAACsAAAAAsAGTAAAGTuCAusTsGGsGAGTACAssTTsGA.....G.....TGAsTATuGTGAT consensus/80% ACTGGTTAsCuTuTAACsAAAAAsAGTAAAGTuCAusTsGGsGAGTACAssTTsGA.....G.....TGAsTATuGTGAT consensus/70% ACTGGTTAsCuTuTAACsAAAAAsAGTAAAGTuCAusTsGGsGAGTACAssTTsGA.....G.....TGAsTATuGTGAT cov pid 21521 . . : . . . . 6 21600 1 2019nCoV 100.0% 100.0% gctgt----t----gtttaccgaggtacaacaacttacaaattaaatgttggtga--ttattttgtgctgacatcacata 2 SARS 95.5% 77.9% gctgt----t----gtgtacagaggtactacgacatacaagttgaatgttggtga--ttactttgtgttgacatctcaca 3 MERS 74.7% 47.2% gctgtatcctacaagtcta-----gtacaacg---tataaactgactgtaggtgacat--cttcgtacttacctctcact consensus/100% GCTGT....T....GTsTA.....GTACsACu...TAsAAusTuAsTGTsGGTGA..T..sTTsGTusTsACsTCsCAss consensus/90% GCTGT....T....GTsTA.....GTACsACu...TAsAAusTuAsTGTsGGTGA..T..sTTsGTusTsACsTCsCAss consensus/80% GCTGT....T....GTsTA.....GTACsACu...TAsAAusTuAsTGTsGGTGA..T..sTTsGTusTsACsTCsCAss consensus/70% GCTGT....T....GTsTA.....GTACsACu...TAsAAusTuAsTGTsGGTGA..T..sTTsGTusTsACsTCsCAss cov pid 21601 . . . . : . . . 21680 1 2019nCoV 100.0% 100.0% cagtaatgccat--taa-gtgcacctacactagtgcca--caagagcactatgttagaattactggcttatacccaac-a 2 SARS 95.5% 77.9% ctgtaatgccac--tta-gtgcacctactctagtgcca--caagagcactatgtgagaattactggcttgtacccaac-a 3 MERS 74.7% 47.2% ctgtg--gctaccttgacg-gcgcccacaattgtg--aatcaagagaggtatgttaaaattactgggttgtacccaacca consensus/100% CsGTu..GCsAs..TsA.G.GCuCCsACssTsGTG..A..CAAGAGsusTATGTsAuAATTACTGGsTTuTACCCAAC.A consensus/90% CsGTu..GCsAs..TsA.G.GCuCCsACssTsGTG..A..CAAGAGsusTATGTsAuAATTACTGGsTTuTACCCAAC.A consensus/80% CsGTu..GCsAs..TsA.G.GCuCCsACssTsGTG..A..CAAGAGsusTATGTsAuAATTACTGGsTTuTACCCAAC.A consensus/70% CsGTu..GCsAs..TsA.G.GCuCCsACssTsGTG..A..CAAGAGsusTATGTsAuAATTACTGGsTTuTACCCAAC.A cov pid 21681 . 7 . . . . : . 21760 1 2019nCoV 100.0% 100.0% ct-caatatctcagatgagttttctagcaa----tgttgcaaattatcaaaa----ggttggtat-gcaaaagtattcta 2 SARS 95.5% 77.9% ct-caacatctcagatgagttttctagcaa----tgttgcaaattatcaaaa----ggtcggcat-gcaaaagtactcta 3 MERS 74.7% 47.2% ttacggtacct--gaagagttc----gcaagtcatgttgccaacttccaaaaatcaggt---tatagtaaa-------ta consensus/100% sT.CuusAsCT..GAsGAGTTs....GCAA....TGTTGCsAAsTssCAAAA....GGT...sAT.GsAAA.......TA consensus/90% sT.CuusAsCT..GAsGAGTTs....GCAA....TGTTGCsAAsTssCAAAA....GGT...sAT.GsAAA.......TA consensus/80% sT.CuusAsCT..GAsGAGTTs....GCAA....TGTTGCsAAsTssCAAAA....GGT...sAT.GsAAA.......TA consensus/70% sT.CuusAsCT..GAsGAGTTs....GCAA....TGTTGCsAAsTssCAAAA....GGT...sAT.GsAAA.......TA cov pid 21761 . . . 8 . . . . 21840 1 2019nCoV 100.0% 100.0% ---cact--ccagggaccacctggtactggtaagagtcattttgctattggcctagctctctactacccttctgctcgca 2 SARS 95.5% 77.9% ---cact--ccaaggaccacctggtactggtaagagtcattttgccatcggacttgctctctattacccatctgctcgca 3 MERS 74.7% 47.2% tgtcactgttcagggaccacctggcactggcaaaagtcattttgctatagggttagcgatttactaccctacagcacgtg consensus/100% ...CACT..sCAuGGACCACCTGGsACTGGsAAuAGTCATTTTGCsATsGGssTsGCssTsTAsTACCCssCsGCsCGsu consensus/90% ...CACT..sCAuGGACCACCTGGsACTGGsAAuAGTCATTTTGCsATsGGssTsGCssTsTAsTACCCssCsGCsCGsu consensus/80% ...CACT..sCAuGGACCACCTGGsACTGGsAAuAGTCATTTTGCsATsGGssTsGCssTsTAsTACCCssCsGCsCGsu consensus/70% ...CACT..sCAuGGACCACCTGGsACTGGsAAuAGTCATTTTGCsATsGGssTsGCssTsTAsTACCCssCsGCsCGsu cov pid 21841 : . . . . 9 . . 21920 1 2019nCoV 100.0% 100.0% tagtgtatacagcttgctctcatgccgctgttgatgcactatgtgagaaggcattaaaatatttgcctatagataaatgt 2 SARS 95.5% 77.9% tagtgtatacggcatgctctcatgcagctgttgatgccctatgtgaaaaggcattaaaatatttgcccatagataaatgt 3 MERS 74.7% 47.2% ttgtttatacagcatgttcacacgcagctgttgatgctttgtgtgaaaaagcttttaaatatttgaacattgctaaatgt consensus/100% TsGTsTATACuGCsTGsTCsCAsGCsGCTGTTGATGCssTuTGTGAuAAuGCsTTsAAATATTTGsssATsGsTAAATGT consensus/90% TsGTsTATACuGCsTGsTCsCAsGCsGCTGTTGATGCssTuTGTGAuAAuGCsTTsAAATATTTGsssATsGsTAAATGT consensus/80% TsGTsTATACuGCsTGsTCsCAsGCsGCTGTTGATGCssTuTGTGAuAAuGCsTTsAAATATTTGsssATsGsTAAATGT consensus/70% TsGTsTATACuGCsTGsTCsCAsGCsGCTGTTGATGCssTuTGTGAuAAuGCsTTsAAATATTTGsssATsGsTAAATGT cov pid 21921 . . : . . . . 0 22000 1 2019nCoV 100.0% 100.0% ---agtagaattatacctgcacgtgctcgtgtagagtgttttgataaattcaaagtgaat-----------tcaacatta 2 SARS 95.5% 77.9% ---agtagaatcatacctgcgcgtgcgcgcgtagagtgttttgataaattcaaagtgaat-----------tcaacacta 3 MERS 74.7% 47.2% tcccgta---tcattcctgcaaaggcacgtgttgagtgctatgacaggtttaaagttaatgagacaaattctcaatatt- consensus/100% ...sGTA...TsATsCCTGCususGCsCGsGTsGAGTGsTsTGAsAuuTTsAAAGTsAAT...........TCAAsAsT. consensus/90% ...sGTA...TsATsCCTGCususGCsCGsGTsGAGTGsTsTGAsAuuTTsAAAGTsAAT...........TCAAsAsT. consensus/80% ...sGTA...TsATsCCTGCususGCsCGsGTsGAGTGsTsTGAsAuuTTsAAAGTsAAT...........TCAAsAsT. consensus/70% ...sGTA...TsATsCCTGCususGCsCGsGTsGAGTGsTsTGAsAuuTTsAAAGTsAAT...........TCAAsAsT. cov pid 22001 . . . . : . . . 22080 1 2019nCoV 100.0% 100.0% gaacagtatgtcttttgtactgtaaatgcattgcctgagacgacagcagatatagttgtct-----ttgatgaaatt--t 2 SARS 95.5% 77.9% gaacagtatgttttctgcactgtaaatgcattgccagaaacaactgctgacattgtagtct-----ttgatgaaatc--t 3 MERS 74.7% 47.2% --------tgttt--agtactattaatgctctaccagaaacttctgccgatat-----tctggtggttgatgaggttagt consensus/100% ........TGTsT..sGsACTuTsAATGCssTuCCsGAuACssCsGCsGAsAT.....TCT.....TTGATGAuuTs..T consensus/90% ........TGTsT..sGsACTuTsAATGCssTuCCsGAuACssCsGCsGAsAT.....TCT.....TTGATGAuuTs..T consensus/80% ........TGTsT..sGsACTuTsAATGCssTuCCsGAuACssCsGCsGAsAT.....TCT.....TTGATGAuuTs..T consensus/70% ........TGTsT..sGsACTuTsAATGCssTuCCsGAuACssCsGCsGAsAT.....TCT.....TTGATGAuuTs..T cov pid 22081 . 1 . . . . : . 22160 1 2019nCoV 100.0% 100.0% caatg-gccacaaattatgat--ttgagtgttgtcaatgccagattacgt------gctaagcacta-tgtgtacattgg 2 SARS 95.5% 77.9% ctatg-gctactaattatgac--ttgagtgttgtcaatgctagacttcgt------gcaaaacacta-cgtctatattgg 3 MERS 74.7% 47.2% --atgtgc-actaattatgatctttca--attattaatgc------acgtattaaagctaagcac-attgtctatgtagg consensus/100% ..ATG.GC.ACsAATTATGAs..TTsA..uTTuTsAATGC......sCGT......GCsAAuCAC.A.sGTsTAsuTsGG consensus/90% ..ATG.GC.ACsAATTATGAs..TTsA..uTTuTsAATGC......sCGT......GCsAAuCAC.A.sGTsTAsuTsGG consensus/80% ..ATG.GC.ACsAATTATGAs..TTsA..uTTuTsAATGC......sCGT......GCsAAuCAC.A.sGTsTAsuTsGG consensus/70% ..ATG.GC.ACsAATTATGAs..TTsA..uTTuTsAATGC......sCGT......GCsAAuCAC.A.sGTsTAsuTsGG cov pid 22161 . . . 2 . . . . 22240 1 2019nCoV 100.0% 100.0% cgaccctgctcaattacctgcaccacgcacattgctaactaagggcacactagaaccagaatatttcaattcagtgtg-- 2 SARS 95.5% 77.9% cgatcctgctcaattaccagccccccgcacattgctgactaaaggcacactagaaccagaatattttaattcagtgtg-- 3 MERS 74.7% 47.2% agatccagcacagttgccagctcctaggactttgttgactagaggcacattggaaccagaaaatttcaat--agtgtcac consensus/100% sGAsCCsGCsCAuTTuCCsGCsCCssGsACsTTGsTuACTAuuGGCACAsTuGAACCAGAAsATTTsAAT..AGTGTs.. consensus/90% sGAsCCsGCsCAuTTuCCsGCsCCssGsACsTTGsTuACTAuuGGCACAsTuGAACCAGAAsATTTsAAT..AGTGTs.. consensus/80% sGAsCCsGCsCAuTTuCCsGCsCCssGsACsTTGsTuACTAuuGGCACAsTuGAACCAGAAsATTTsAAT..AGTGTs.. consensus/70% sGAsCCsGCsCAuTTuCCsGCsCCssGsACsTTGsTuACTAuuGGCACAsTuGAACCAGAAsATTTsAAT..AGTGTs.. cov pid 22241 : . . . . 3 . . 22320 1 2019nCoV 100.0% 100.0% tagacttatgaa-aactataggtccagacatgttcctcggaact-tgtcggc----gttgtcct--gctgaaattgttga 2 SARS 95.5% 77.9% cagacttatgaa-aacaataggtccagacatgttccttggaact-tgtcgcc----gttgtcct--gctgaaattgttga 3 MERS 74.7% 47.2% tagattgatgtgtaact-taggtcctgacatattttt---aagtatgt--gctacaggtgtcctaag--gaaatagtaag consensus/100% sAGAsTsATGsu.AACs.TAGGTCCsGACATuTTssT...AAsT.TGT..sC....GsTGTCCT..G..GAAATsGTsuu consensus/90% sAGAsTsATGsu.AACs.TAGGTCCsGACATuTTssT...AAsT.TGT..sC....GsTGTCCT..G..GAAATsGTsuu consensus/80% sAGAsTsATGsu.AACs.TAGGTCCsGACATuTTssT...AAsT.TGT..sC....GsTGTCCT..G..GAAATsGTsuu consensus/70% sAGAsTsATGsu.AACs.TAGGTCCsGACATuTTssT...AAsT.TGT..sC....GsTGTCCT..G..GAAATsGTsuu cov pid 22321 . . : . . . . 4 22400 1 2019nCoV 100.0% 100.0% cactgtgagtgctttggtttatgataataa---gcttaaagcacataaagacaaa------tcagctcaatgctttaaaa 2 SARS 95.5% 77.9% cactgtgagtgctttagtttatgacaataa---gctaaaagcacacaaggataag------tcagctcaatgcttcaaaa 3 MERS 74.7% 47.2% cactgtgagcgctcttgtctacaataataaattgtt---agc---caag---aaggagctttcaggccagtgctttaaaa consensus/100% CACTGTGAGsGCTsTsGTsTAsuAsAATAA...GsT...AGC...sAAu...AAu......TCAGssCAuTGCTTsAAAA consensus/90% CACTGTGAGsGCTsTsGTsTAsuAsAATAA...GsT...AGC...sAAu...AAu......TCAGssCAuTGCTTsAAAA consensus/80% CACTGTGAGsGCTsTsGTsTAsuAsAATAA...GsT...AGC...sAAu...AAu......TCAGssCAuTGCTTsAAAA consensus/70% CACTGTGAGsGCTsTsGTsTAsuAsAATAA...GsT...AGC...sAAu...AAu......TCAGssCAuTGCTTsAAAA cov pid 22401 . . . . : . . . 22480 1 2019nCoV 100.0% 100.0% tgttttataaggg-----tgttatcacgcatgatgtttca--tctgcaattaacaggccacaa-----ataggcgtggta 2 SARS 95.5% 77.9% tgttctacaaagg-----tgttattacacatgatgtttca--tctgcaatcaacagacctcaa-----ataggcgttgta 3 MERS 74.7% 47.2% tactctataagggcaatgtg-----acgcatgatgct--agctctgccattaatagaccacaactcacat-----ttgtg consensus/100% TusTsTAsAAuGG.....TG.....ACuCATGATGsT..A..TCTGCsATsAAsAGuCCsCAA.....AT.....TsGTu consensus/90% TusTsTAsAAuGG.....TG.....ACuCATGATGsT..A..TCTGCsATsAAsAGuCCsCAA.....AT.....TsGTu consensus/80% TusTsTAsAAuGG.....TG.....ACuCATGATGsT..A..TCTGCsATsAAsAGuCCsCAA.....AT.....TsGTu consensus/70% TusTsTAsAAuGG.....TG.....ACuCATGATGsT..A..TCTGCsATsAAsAGuCCsCAA.....AT.....TsGTu cov pid 22481 . 5 . . . . : . 22560 1 2019nCoV 100.0% 100.0% agagaattcc-ttac-acgtaaccctgcttggagaaaagctgtctttatttcaccttataattcacagaatgctgtagcc 2 SARS 95.5% 77.9% agagaatttc-ttac-acgcaatcctgcttggagaaaagctgtttttatctcaccttataattcacagaacgctgtagct 3 MERS 74.7% 47.2% a-agaattttattactgc-caatccggcatggagtaaggcagtctttatttcgccttacaattcacagaatgctgtgtct consensus/100% A.AGAATTss.TTAC.uC.sAAsCCsGCsTGGAGsAAuGCsGTsTTTATsTCuCCTTAsAATTCACAGAAsGCTGTusCs consensus/90% A.AGAATTss.TTAC.uC.sAAsCCsGCsTGGAGsAAuGCsGTsTTTATsTCuCCTTAsAATTCACAGAAsGCTGTusCs consensus/80% A.AGAATTss.TTAC.uC.sAAsCCsGCsTGGAGsAAuGCsGTsTTTATsTCuCCTTAsAATTCACAGAAsGCTGTusCs consensus/70% A.AGAATTss.TTAC.uC.sAAsCCsGCsTGGAGsAAuGCsGTsTTTATsTCuCCTTAsAATTCACAGAAsGCTGTusCs cov pid 22561 . . . 6 . . . . 22640 1 2019nCoV 100.0% 100.0% ---tcaaagattttggg-actaccaactcaaactgttgattcatcacagggctcagaatatgactatgtcatattcactc 2 SARS 95.5% 77.9% ---tcaaaaatcttagg-attgcctacgcagactgttgattcatcacagggttctgaatatgactatgtcatattcacac 3 MERS 74.7% 47.2% cgttca---atgctgggtcttacc-actcagactgttgattcctcacagggttcagaataccagtacgttatcttctgtc consensus/100% ...TCA...ATssTuGG.ssTuCC.ACsCAuACTGTTGATTCsTCACAGGGsTCsGAATAssAsTAsGTsATsTTCsssC consensus/90% ...TCA...ATssTuGG.ssTuCC.ACsCAuACTGTTGATTCsTCACAGGGsTCsGAATAssAsTAsGTsATsTTCsssC consensus/80% ...TCA...ATssTuGG.ssTuCC.ACsCAuACTGTTGATTCsTCACAGGGsTCsGAATAssAsTAsGTsATsTTCsssC consensus/70% ...TCA...ATssTuGG.ssTuCC.ACsCAuACTGTTGATTCsTCACAGGGsTCsGAATAssAsTAsGTsATsTTCsssC cov pid 22641 : . . . . 7 . . 22720 1 2019nCoV 100.0% 100.0% aaaccactgaaacagctcactcttgtaatgtaaacagatttaatgttgctattaccagagc--aaaagtaggcatacttt 2 SARS 95.5% 77.9% aaactactgaaacagcacactcttgtaatgtcaaccgcttcaatgtggctatcacaagggc--aaaaattggcat--ttt 3 MERS 74.7% 47.2% aaacagcagatacggcacatgctaacaacattaacagatttaatgttgcaatcactcgtgcccaaaaa--ggtattcttt consensus/100% AAACsuCsGAsACuGCsCAssCTsusAAsuTsAACsGsTTsAATGTsGCsATsACssGsGC..AAAAu..GGsAT..TTT consensus/90% AAACsuCsGAsACuGCsCAssCTsusAAsuTsAACsGsTTsAATGTsGCsATsACssGsGC..AAAAu..GGsAT..TTT consensus/80% AAACsuCsGAsACuGCsCAssCTsusAAsuTsAACsGsTTsAATGTsGCsATsACssGsGC..AAAAu..GGsAT..TTT consensus/70% AAACsuCsGAsACuGCsCAssCTsusAAsuTsAACsGsTTsAATGTsGCsATsACssGsGC..AAAAu..GGsAT..TTT cov pid 22721 . . : . . . . 8 22800 1 2019nCoV 100.0% 100.0% --gc-ataatgtct------------ga-----tagagacctttatgacaagttgcaatttacaagtcttgaaattccac 2 SARS 95.5% 77.9% gtgc-ataatgtct------------ga-----tagagatctttatgacaaactgcaatttacaagtctagaaataccac 3 MERS 74.7% 47.2% gtgttatgacatctcaggcactctttgagtccttagag---ttta-------ctg-aatt-----gtctt---------- consensus/100% ..Gs.ATuAsuTCT............GA.....TAGAG...TTTA.......sTG.AATT.....GTCTs.......... consensus/90% ..Gs.ATuAsuTCT............GA.....TAGAG...TTTA.......sTG.AATT.....GTCTs.......... consensus/80% ..Gs.ATuAsuTCT............GA.....TAGAG...TTTA.......sTG.AATT.....GTCTs.......... consensus/70% ..Gs.ATuAsuTCT............GA.....TAGAG...TTTA.......sTG.AATT.....GTCTs.......... cov pid 22801 . . . . : . . . 22880 1 2019nCoV 100.0% 100.0% gtaggaatgtggcaact--ttacaag---ctg----aaaatgtaacaggactctttaaagattg---tagtaaggtaatc 2 SARS 95.5% 77.9% gtcgcaatgtggctaca--ttacaag---cag----aaaatgtaactggactttttaaggactg---tagtaagatcatt 3 MERS 74.7% 47.2% ------------ttactaattacaagctccagtctcagattgtaactggcctttttaaagattgctctag--aga-aact consensus/100% ............ssACs..TTACAAG...CsG....AuAsTGTAACsGGsCTsTTTAAuGAsTG...TAG..AGu.sAss consensus/90% ............ssACs..TTACAAG...CsG....AuAsTGTAACsGGsCTsTTTAAuGAsTG...TAG..AGu.sAss consensus/80% ............ssACs..TTACAAG...CsG....AuAsTGTAACsGGsCTsTTTAAuGAsTG...TAG..AGu.sAss consensus/70% ............ssACs..TTACAAG...CsG....AuAsTGTAACsGGsCTsTTTAAuGAsTG...TAG..AGu.sAss cov pid 22881 . 9 . . . . : . 22960 1 2019nCoV 100.0% 100.0% actgggtt-acatcctacacaggcacctacacacctcagtgttgacacta-aa-ttcaaaac---tga--aggtttatgt 2 SARS 95.5% 77.9% actggtct-tcatcctacacaggcacctacacacctcagcgttgata-ta-aagttcaagac---tga--aggattatgt 3 MERS 74.7% 47.2% tctggcctctca-cctgcttatgcaccaacatatgttagtgttgatg--acaagtataagacgagtgatgagctttgcgt consensus/100% sCTGGssT.sCA.CCTuCssAsGCACCsACAsAssTsAGsGTTGAsu..A.AA.TssAAuAC...TGA..AGssTTusGT consensus/90% sCTGGssT.sCA.CCTuCssAsGCACCsACAsAssTsAGsGTTGAsu..A.AA.TssAAuAC...TGA..AGssTTusGT consensus/80% sCTGGssT.sCA.CCTuCssAsGCACCsACAsAssTsAGsGTTGAsu..A.AA.TssAAuAC...TGA..AGssTTusGT consensus/70% sCTGGssT.sCA.CCTuCssAsGCACCsACAsAssTsAGsGTTGAsu..A.AA.TssAAuAC...TGA..AGssTTusGT cov pid 22961 . . . 0 . . . . 23040 1 2019nCoV 100.0% 100.0% g----ttgacatacctggcatacctaaggacatgacctatagaagactc-------atctctatgatgggttttaaa--- 2 SARS 95.5% 77.9% g----ttgacataccaggcataccaaaggacatgacctaccgtagactc-------atctctatgatgggtttcaaa--- 3 MERS 74.7% 47.2% gaatcttaatttacccg------caa-----atgtcccat-----actctcgtgttatttccaggatgggctttaaactc consensus/100% G....TTuAssTACCsG......CsA.....ATGsCCsAs.....ACTC.......ATsTCsAsGATGGGsTTsAAA... consensus/90% G....TTuAssTACCsG......CsA.....ATGsCCsAs.....ACTC.......ATsTCsAsGATGGGsTTsAAA... consensus/80% G....TTuAssTACCsG......CsA.....ATGsCCsAs.....ACTC.......ATsTCsAsGATGGGsTTsAAA... consensus/70% G....TTuAssTACCsG......CsA.....ATGsCCsAs.....ACTC.......ATsTCsAsGATGGGsTTsAAA... cov pid 23041 : . . . . 1 . . 23120 1 2019nCoV 100.0% 100.0% -atgaattatca--agttaatggttaccctaacatg---tttatcacccgcgaagaagctataagacatgtacgt-gcat 2 SARS 95.5% 77.9% -atgaattacca--agtcaatggttaccctaatatg---tttatcacccgcgaagaagctattcgtcacgttcgt-gcgt 3 MERS 74.7% 47.2% gatg------caacagttcctggatatcctaa---gcttttcattactcgtgaagaggctgtaaggcaagttcgaagc-t consensus/100% .ATG......CA..AGTsssTGGsTAsCCTAA...G...TTsATsACsCGsGAAGAuGCTuTssGsCAsGTsCGs.GC.T consensus/90% .ATG......CA..AGTsssTGGsTAsCCTAA...G...TTsATsACsCGsGAAGAuGCTuTssGsCAsGTsCGs.GC.T consensus/80% .ATG......CA..AGTsssTGGsTAsCCTAA...G...TTsATsACsCGsGAAGAuGCTuTssGsCAsGTsCGs.GC.T consensus/70% .ATG......CA..AGTsssTGGsTAsCCTAA...G...TTsATsACsCGsGAAGAuGCTuTssGsCAsGTsCGs.GC.T cov pid 23121 . . : . . . . 2 23200 1 2019nCoV 100.0% 100.0% ggattggcttcgatgtcgaggggtg-tcatgctac---tagagaagc-tgttggtaccaatttacctttacagctaggtt 2 SARS 95.5% 77.9% ggattggctttgatgtagagggctg-tcatgcaac---tagagatgc-tgtgggtactaacctacctctccagctaggat 3 MERS 74.7% 47.2% ggataggcttcgatgttgaggg-tgctcatgcttcccgta---atgcatgt-ggcaccaatgtgcctctacaattaggat consensus/100% GGATsGGCTTsGATGTsGAGGG.TG.TCATGCssC...TA...AsGC.TGT.GGsACsAAssTuCCTsTsCAusTAGGsT consensus/90% GGATsGGCTTsGATGTsGAGGG.TG.TCATGCssC...TA...AsGC.TGT.GGsACsAAssTuCCTsTsCAusTAGGsT consensus/80% GGATsGGCTTsGATGTsGAGGG.TG.TCATGCssC...TA...AsGC.TGT.GGsACsAAssTuCCTsTsCAusTAGGsT consensus/70% GGATsGGCTTsGATGTsGAGGG.TG.TCATGCssC...TA...AsGC.TGT.GGsACsAAssTuCCTsTsCAusTAGGsT cov pid 23201 . . . . : . . . 23280 1 2019nCoV 100.0% 100.0% tttctacaggtgttaacctagttgctgtacctacag---gtta-tgttg---atacacct---aat-----aatacagat 2 SARS 95.5% 77.9% tttctacaggtgttaacttagtagctgtaccgactg---gtta-tgttg---acac---tgaaaat-----aacacagaa 3 MERS 74.7% 47.2% tttcaactggtgtgaactttgttgtt-------cagccagttggtgttgtagacac---tg--agtggggtaacat---- consensus/100% TTTCsACsGGTGTsAACsTsGTsGsT.......CsG...GTTu.TGTTG...AsAC...T...AuT.....AAsAs.... consensus/90% TTTCsACsGGTGTsAACsTsGTsGsT.......CsG...GTTu.TGTTG...AsAC...T...AuT.....AAsAs.... consensus/80% TTTCsACsGGTGTsAACsTsGTsGsT.......CsG...GTTu.TGTTG...AsAC...T...AuT.....AAsAs.... consensus/70% TTTCsACsGGTGTsAACsTsGTsGsT.......CsG...GTTu.TGTTG...AsAC...T...AuT.....AAsAs.... cov pid 23281 . 3 . . . . : . 23360 1 2019nCoV 100.0% 100.0% ttttccagagttag-------tgctaaac---caccgcctggagatcaatttaaacacctcataccacttatgtacaaag 2 SARS 95.5% 77.9% ttcaccagagttaa-------tgcaaaac---ctccaccaggtgaccagtttaaacatcttataccactcatgtataaag 3 MERS 74.7% 47.2% ---------gttaacgggcattgctgcacgtcctccaccaggtgaacagtttaagcacctcgtgcctcttatgcataagg consensus/100% .........GTTAu.......TGCsusAC...CsCCuCCsGGsGAsCAuTTTAAuCAsCTsuTuCCsCTsATGsAsAAuG consensus/90% .........GTTAu.......TGCsusAC...CsCCuCCsGGsGAsCAuTTTAAuCAsCTsuTuCCsCTsATGsAsAAuG consensus/80% .........GTTAu.......TGCsusAC...CsCCuCCsGGsGAsCAuTTTAAuCAsCTsuTuCCsCTsATGsAsAAuG consensus/70% .........GTTAu.......TGCsusAC...CsCCuCCsGGsGAsCAuTTTAAuCAsCTsuTuCCsCTsATGsAsAAuG cov pid 23361 . . . 4 . . . . 23440 1 2019nCoV 100.0% 100.0% gactt-ccttggaatgtag--tgcgt-----ataa--ag-------attgtacaaatgttaagtgacacacttaaaa-at 2 SARS 95.5% 77.9% g-cttgccctggaatgtag--tgcgt-----atta--ag-------atagtacaaatgctcagtgatacactgaaaggat 3 MERS 74.7% 47.2% g-----------------ggctgcgtggcctattgttagacgacgtatagtgcaaatgtt--gtcagacact-------- consensus/100% G.................G..TGCGT.....ATsu..AG.......ATsGTuCAAATGsT..GTsAsACACT........ consensus/90% G.................G..TGCGT.....ATsu..AG.......ATsGTuCAAATGsT..GTsAsACACT........ consensus/80% G.................G..TGCGT.....ATsu..AG.......ATsGTuCAAATGsT..GTsAsACACT........ consensus/70% G.................G..TGCGT.....ATsu..AG.......ATsGTuCAAATGsT..GTsAsACACT........ cov pid 23441 : . . . . 5 . . 23520 1 2019nCoV 100.0% 100.0% ctctctgacaga--gtc--------gt--atttgtcttatgggcacatggctttgagttgacatctatgaa--gtatttt 2 SARS 95.5% 77.9% -tgtcagacaga--gtc--------gt--gttcgtcctttgggcgcatggctttgagcttacatcaatgaa--gtacttt 3 MERS 74.7% 47.2% ---ttagacaaattgtctgattactgtacgtttgtttgttgggctcatggctttgaattaacgtc--tgcatcatacttt consensus/100% ...TssGACAuA..GTC........GT..uTTsGTssssTGGGCsCATGGCTTTGAusTsACuTC..TGsA..uTAsTTT consensus/90% ...TssGACAuA..GTC........GT..uTTsGTssssTGGGCsCATGGCTTTGAusTsACuTC..TGsA..uTAsTTT consensus/80% ...TssGACAuA..GTC........GT..uTTsGTssssTGGGCsCATGGCTTTGAusTsACuTC..TGsA..uTAsTTT consensus/70% ...TssGACAuA..GTC........GT..uTTsGTssssTGGGCsCATGGCTTTGAusTsACuTC..TGsA..uTAsTTT cov pid 23521 . . : . . . . 6 23600 1 2019nCoV 100.0% 100.0% -gtgaaaataggacctgagcgcac----ctgttgtctatgtgatagacg---tgccacatgcttttccactgcttcagac 2 SARS 95.5% 77.9% -gtcaagattggacctgaaagaac----gtgttgtctgtgtgacaaacg---tgcaacttgcttttctacttcatcagat 3 MERS 74.7% 47.2% tg-caagatagg---taag-gaacagaagtgttgcatgtgcaatagacgcgctgcagcgtactcttc-acctctgca-at consensus/100% .G.sAAuATsGG...TuAu.GsAC....sTGTTGssTuTGsuAsAuACG...TGCsuCsTuCTsTTC.ACssCssCA.As consensus/90% .G.sAAuATsGG...TuAu.GsAC....sTGTTGssTuTGsuAsAuACG...TGCsuCsTuCTsTTC.ACssCssCA.As consensus/80% .G.sAAuATsGG...TuAu.GsAC....sTGTTGssTuTGsuAsAuACG...TGCsuCsTuCTsTTC.ACssCssCA.As consensus/70% .G.sAAuATsGG...TuAu.GsAC....sTGTTGssTuTGsuAsAuACG...TGCsuCsTuCTsTTC.ACssCssCA.As cov pid 23601 . . . . : . . . 23680 1 2019nCoV 100.0% 100.0% acttatgcctgttggcatcattc-tattggatttgattacgtctataatccgtt-tatgattgatgttcaacaatggggt 2 SARS 95.5% 77.9% acttatgcctgctggaatcattc-tgtgggttttgactatgtctataacccatt-tatgattgatgttcagcagtggggc 3 MERS 74.7% 47.2% -cttatgcctgctggactcattcctgc-ggttatgattatgtctacaaccctttctttg-tcgatgttcaacagtggggt consensus/100% .CTTATGCCTGsTGGssTCATTC.Tus.GGsTsTGAsTAsGTCTAsAAsCCsTT.TsTG.TsGATGTTCAuCAuTGGGGs consensus/90% .CTTATGCCTGsTGGssTCATTC.Tus.GGsTsTGAsTAsGTCTAsAAsCCsTT.TsTG.TsGATGTTCAuCAuTGGGGs consensus/80% .CTTATGCCTGsTGGssTCATTC.Tus.GGsTsTGAsTAsGTCTAsAAsCCsTT.TsTG.TsGATGTTCAuCAuTGGGGs consensus/70% .CTTATGCCTGsTGGssTCATTC.Tus.GGsTsTGAsTAsGTCTAsAAsCCsTT.TsTG.TsGATGTTCAuCAuTGGGGs cov pid 23681 . 7 . . . . : . 23760 1 2019nCoV 100.0% 100.0% tttacaggtaacctacaaagc----aaccatgatctgtattgtcaagtccat---ggtaatgcacatgtagct----agt 2 SARS 95.5% 77.9% tttacgggtaaccttcagagt----aaccatgaccaacattgccaggtacat---ggaaatgcacatgtggct----agt 3 MERS 74.7% 47.2% tatgtaggcaatctt----gctactaatcacgatcgttattgctctgtccatcaagga---gctcatgtggcttctaa-- consensus/100% TsTusuGGsAAsCTs....Gs....AAsCAsGAsCsssATTGssssGTsCAT...GGs...GCsCATGTuGCT....A.. consensus/90% TsTusuGGsAAsCTs....Gs....AAsCAsGAsCsssATTGssssGTsCAT...GGs...GCsCATGTuGCT....A.. consensus/80% TsTusuGGsAAsCTs....Gs....AAsCAsGAsCsssATTGssssGTsCAT...GGs...GCsCATGTuGCT....A.. consensus/70% TsTusuGGsAAsCTs....Gs....AAsCAsGAsCsssATTGssssGTsCAT...GGs...GCsCATGTuGCT....A.. cov pid 23761 . . . 8 . . . . 23840 1 2019nCoV 100.0% 100.0% tgtgatgcaatcatgactaggtgtctagctgtccacgagtgctttgtt-----aagcgtgttgactggactattgaatat 2 SARS 95.5% 77.9% tgtgatgctatcatgactagatgtttagcagtccatgagtgctttgtt-----aagcgcgttgattggtctgttgaatac 3 MERS 74.7% 47.2% --tgatgcaataatgactcgttgtttagctattcat-----tcttgttttatagaacgtgtggattgggatatagagtat consensus/100% ..TGATGCsATsATGACTsGsTGTsTAGCsuTsCAs.....ssTTGTT.....uAuCGsGTsGAsTGGssTuTsGAuTAs consensus/90% ..TGATGCsATsATGACTsGsTGTsTAGCsuTsCAs.....ssTTGTT.....uAuCGsGTsGAsTGGssTuTsGAuTAs consensus/80% ..TGATGCsATsATGACTsGsTGTsTAGCsuTsCAs.....ssTTGTT.....uAuCGsGTsGAsTGGssTuTsGAuTAs consensus/70% ..TGATGCsATsATGACTsGsTGTsTAGCsuTsCAs.....ssTTGTT.....uAuCGsGTsGAsTGGssTuTsGAuTAs cov pid 23841 : . . . . 9 . . 23920 1 2019nCoV 100.0% 100.0% cc-tata----attggtgatgaactgaaga--tt-aatgcggct--tgtagaa-----aggttcaac-----acatggtt 2 SARS 95.5% 77.9% cc-tatt----ataggagatgaactgaggg--tt-aattctgct--tgcagaa-----aagtacaac-----acatggtt 3 MERS 74.7% 47.2% ccttatatctcac-----atgaa---aagaaattgaattc--ctgttgtagaatcgttgagcgcaacgtcgtacgtg--- consensus/100% CC.TATs....As.....ATGAA...AuGu..TT.AATsC..CT..TGsAGAA.....uuGssCAAC.....ACuTG... consensus/90% CC.TATs....As.....ATGAA...AuGu..TT.AATsC..CT..TGsAGAA.....uuGssCAAC.....ACuTG... consensus/80% CC.TATs....As.....ATGAA...AuGu..TT.AATsC..CT..TGsAGAA.....uuGssCAAC.....ACuTG... consensus/70% CC.TATs....As.....ATGAA...AuGu..TT.AATsC..CT..TGsAGAA.....uuGssCAAC.....ACuTG... cov pid 23921 . . : . . . . 0 24000 1 2019nCoV 100.0% 100.0% gttaaag-ctgcattattagc---------agacaaattcccagttcttcacgacattggtaaccctaaag------cta 2 SARS 95.5% 77.9% g-tgaagtctgcattgcttgc---------tgataagtttccagttcttcatgacattggaaatccaaagg------cta 3 MERS 74.7% 47.2% --------ctgctcttcttgccggttcatttgacaa------ag-tct--atgatattggcaatcctaaaggaattccta consensus/100% ........CTGCssTssTsGC.........sGAsAA......AG.TCT..AsGAsATTGGsAAsCCsAAuG......CTA consensus/90% ........CTGCssTssTsGC.........sGAsAA......AG.TCT..AsGAsATTGGsAAsCCsAAuG......CTA consensus/80% ........CTGCssTssTsGC.........sGAsAA......AG.TCT..AsGAsATTGGsAAsCCsAAuG......CTA consensus/70% ........CTGCssTssTsGC.........sGAsAA......AG.TCT..AsGAsATTGGsAAsCCsAAuG......CTA cov pid 24001 . . . . : . . . 24080 1 2019nCoV 100.0% 100.0% ttaagtgtgt-----acctcaagctgatgtagaatggaa--gttctatgatgcacagccttgtagtgac----aaagctt 2 SARS 95.5% 77.9% tcaagtgtgt-----gcctcaggctgaagtagaatggaa--gttctacgatgctcagccatgtagtgac----aaagctt 3 MERS 74.7% 47.2% t------tgttgatgacc-----ctgtggttgattggcattatttt--gatgcacagccct----tgaccaggaagg--t consensus/100% T......TGT.....uCC.....CTGssGTsGAsTGGsA..uTTsT..GATGCsCAGCCsT....TGAC....AAuG..T consensus/90% T......TGT.....uCC.....CTGssGTsGAsTGGsA..uTTsT..GATGCsCAGCCsT....TGAC....AAuG..T consensus/80% T......TGT.....uCC.....CTGssGTsGAsTGGsA..uTTsT..GATGCsCAGCCsT....TGAC....AAuG..T consensus/70% T......TGT.....uCC.....CTGssGTsGAsTGGsA..uTTsT..GATGCsCAGCCsT....TGAC....AAuG..T cov pid 24081 . 1 . . . . : . 24160 1 2019nCoV 100.0% 100.0% ataaaatagaagaattattctattcttatgccaca-----cattctgac----aaattcacagatggtg-tatgcctatt 2 SARS 95.5% 77.9% acaaaatagaggaactcttctattcttatgctaca-----catcacgat----aaattcactgatggtg-tttgtttgtt 3 MERS 74.7% 47.2% ac--aacag-----cttttctat---------acagaggacat---ggcctcaagatttgctgatgg-gctctgcttatt consensus/100% As..AAsAG.....sTsTTCTAT.........ACA.....CAT...Gus....AuATTsuCsGATGG.G.TsTGssTuTT consensus/90% As..AAsAG.....sTsTTCTAT.........ACA.....CAT...Gus....AuATTsuCsGATGG.G.TsTGssTuTT consensus/80% As..AAsAG.....sTsTTCTAT.........ACA.....CAT...Gus....AuATTsuCsGATGG.G.TsTGssTuTT consensus/70% As..AAsAG.....sTsTTCTAT.........ACA.....CAT...Gus....AuATTsuCsGATGG.G.TsTGssTuTT cov pid 24161 . . . 2 . . . . 24240 1 2019nCoV 100.0% 100.0% ttggaattgcaatgt--cgatagatatcctgctaattccattgtttgtagatttgacactagagtgc-tatctaacctta 2 SARS 95.5% 77.9% ttggaattgtaacgt--tgatcgttacccagccaatgcaattgtgtgtaggtttgacacaagagtct-tgtcaaacttga 3 MERS 74.7% 47.2% ttggaactgtaatgtaccaa--aatatcctaataatgcaattgtatgcaggtttgacacacgtgtgcat-tctgagttca consensus/100% TTGGAAsTGsAAsGT..suA..usTAsCCsussAATsCsATTGTsTGsAGuTTTGACACssGsGTss.T.TCsuAssTsA consensus/90% TTGGAAsTGsAAsGT..suA..usTAsCCsussAATsCsATTGTsTGsAGuTTTGACACssGsGTss.T.TCsuAssTsA consensus/80% TTGGAAsTGsAAsGT..suA..usTAsCCsussAATsCsATTGTsTGsAGuTTTGACACssGsGTss.T.TCsuAssTsA consensus/70% TTGGAAsTGsAAsGT..suA..usTAsCCsussAATsCsATTGTsTGsAGuTTTGACACssGsGTss.T.TCsuAssTsA cov pid 24241 : . . . . 3 . . 24320 1 2019nCoV 100.0% 100.0% acttgcctggttgtgatggtggcagtttgtatgtaaataaacatgcattccacacaccagcttttgataaaagtgcttt- 2 SARS 95.5% 77.9% acttaccaggctgtgatggtggtagtttgtatgtgaataagcatgcattccacactccagctttcgataaaagtgcatt- 3 MERS 74.7% 47.2% atttgccaggttgtgatggcggtagtttgtatgttaacaagcacgcttttcatacaccagcatatgatgtgagtgcattc consensus/100% AsTTuCCsGGsTGTGATGGsGGsAGTTTGTATGTsAAsAAuCAsGCsTTsCAsACsCCAGCsTssGATusuAGTGCsTT. consensus/90% AsTTuCCsGGsTGTGATGGsGGsAGTTTGTATGTsAAsAAuCAsGCsTTsCAsACsCCAGCsTssGATusuAGTGCsTT. consensus/80% AsTTuCCsGGsTGTGATGGsGGsAGTTTGTATGTsAAsAAuCAsGCsTTsCAsACsCCAGCsTssGATusuAGTGCsTT. consensus/70% AsTTuCCsGGsTGTGATGGsGGsAGTTTGTATGTsAAsAAuCAsGCsTTsCAsACsCCAGCsTssGATusuAGTGCsTT. cov pid 24321 . . : . . . . 4 24400 1 2019nCoV 100.0% 100.0% --tgttaatttaaaacaattaccatttttctattactctg--acagtccatgtga---gtctcatggaaaacaa--gtag 2 SARS 95.5% 77.9% --tactaatttaaagcaattgcctttcttttactattctg--atagtccttgtga---gtctcatggcaaacaa--gtag 3 MERS 74.7% 47.2% cgtg---atctgaaacctttaccattcttttattattctactaca--ccatgtgaagtg---catgg----taatggtag consensus/100% ..Tu...ATsTuAAuCssTTuCCsTTsTTsTAsTAsTCTu..AsA..CCsTGTGA...G...CATGG....sAA..GTAG consensus/90% ..Tu...ATsTuAAuCssTTuCCsTTsTTsTAsTAsTCTu..AsA..CCsTGTGA...G...CATGG....sAA..GTAG consensus/80% ..Tu...ATsTuAAuCssTTuCCsTTsTTsTAsTAsTCTu..AsA..CCsTGTGA...G...CATGG....sAA..GTAG consensus/70% ..Tu...ATsTuAAuCssTTuCCsTTsTTsTAsTAsTCTu..AsA..CCsTGTGA...G...CATGG....sAA..GTAG cov pid 24401 . . . . : . . . 24480 1 2019nCoV 100.0% 100.0% tgt-----cagatatagattatgtaccactaaagtctgcta--cgtgtataacacg-ttgcaatttaggtggtgctgtct 2 SARS 95.5% 77.9% tgt-----cggatattgattatgttccactcaaatctgcta--cgtgtattacacg-atgcaatttaggtggtgctgttt 3 MERS 74.7% 47.2% tatgatagaggatattgattatgtacccctaaaatctgc-agtc-tgtattaca-gcttgtaatttagggggcgctgttt consensus/100% TuT.....suGATATsGATTATGTsCCsCTsAAuTCTGC.A..C.TGTATsACA.G.sTGsAATTTAGGsGGsGCTGTsT consensus/90% TuT.....suGATATsGATTATGTsCCsCTsAAuTCTGC.A..C.TGTATsACA.G.sTGsAATTTAGGsGGsGCTGTsT consensus/80% TuT.....suGATATsGATTATGTsCCsCTsAAuTCTGC.A..C.TGTATsACA.G.sTGsAATTTAGGsGGsGCTGTsT consensus/70% TuT.....suGATATsGATTATGTsCCsCTsAAuTCTGC.A..C.TGTATsACA.G.sTGsAATTTAGGsGGsGCTGTsT cov pid 24481 . 5 . . . . : . 24560 1 2019nCoV 100.0% 100.0% gtagacatcatgcta-atgagtacagattgtatctcgatgcttataacatgatgatctcagc-t--ggctttagcttgtg 2 SARS 95.5% 77.9% gcagacaccatgcaa-atgagtaccgacagtacttggatgcatataatatgatgatttctgc-t--ggatttagcctatg 3 MERS 74.7% 47.2% gtaggaagcatgctaca-gagtacagagagtatatggaagcatataatct--tg-tctctgcatcaggtttccgcctttg consensus/100% GsAGusAsCATGCsA.A.GAGTACsGAssGTAssTsGAsGCsTATAAssT..TG.TsTCsGC.T..GGsTTssGCsTsTG consensus/90% GsAGusAsCATGCsA.A.GAGTACsGAssGTAssTsGAsGCsTATAAssT..TG.TsTCsGC.T..GGsTTssGCsTsTG consensus/80% GsAGusAsCATGCsA.A.GAGTACsGAssGTAssTsGAsGCsTATAAssT..TG.TsTCsGC.T..GGsTTssGCsTsTG consensus/70% GsAGusAsCATGCsA.A.GAGTACsGAssGTAssTsGAsGCsTATAAssT..TG.TsTCsGC.T..GGsTTssGCsTsTG cov pid 24561 . . . 6 . . . . 24640 1 2019nCoV 100.0% 100.0% g-gtttacaaacaa----tttgatacttataacctctggaacacttttacaagacttcagagtttagaaaatgtggcttt 2 SARS 95.5% 77.9% g-atttacaaacaa----tttgatacttataacctgtggaatacatttaccaggttacagagtttagaaaatgtggctta 3 MERS 74.7% 47.2% gtgtt-----ataagacctttgatatttataatctctggtctacttttacaaaagttcaaggtttggaaaacattgcttt consensus/100% G.uTT.....AsAA....TTTGATAsTTATAAsCTsTGGsssACsTTTACsAuusTsCAuuGTTTuGAAAAsuTsGCTTs consensus/90% G.uTT.....AsAA....TTTGATAsTTATAAsCTsTGGsssACsTTTACsAuusTsCAuuGTTTuGAAAAsuTsGCTTs consensus/80% G.uTT.....AsAA....TTTGATAsTTATAAsCTsTGGsssACsTTTACsAuusTsCAuuGTTTuGAAAAsuTsGCTTs consensus/70% G.uTT.....AsAA....TTTGATAsTTATAAsCTsTGGsssACsTTTACsAuusTsCAuuGTTTuGAAAAsuTsGCTTs cov pid 24641 : . . . . 7 . . 24720 1 2019nCoV 100.0% 100.0% taatgttgtaaata-agggacacttt---gatg--gacaacag--ggtgaagtaccagtttcta-------tcattaata 2 SARS 95.5% 77.9% taatgttgttaata-aaggacacttt---gatg--gaca-c-gccggcgaagcacctgtttcca-------tcattaata 3 MERS 74.7% 47.2% taatgttgttaa-acaaggccattttattggtgttga-----g--ggtgaactacctgt----agctgtagtcaatgata consensus/100% TAATGTTGTsAA.A.AuGGsCAsTTT...GuTG..GA.....G..GGsGAAssACCsGT....A.......TCAsTuATA consensus/90% TAATGTTGTsAA.A.AuGGsCAsTTT...GuTG..GA.....G..GGsGAAssACCsGT....A.......TCAsTuATA consensus/80% TAATGTTGTsAA.A.AuGGsCAsTTT...GuTG..GA.....G..GGsGAAssACCsGT....A.......TCAsTuATA consensus/70% TAATGTTGTsAA.A.AuGGsCAsTTT...GuTG..GA.....G..GGsGAAssACCsGT....A.......TCAsTuATA cov pid 24721 . . : . . . . 8 24800 1 2019nCoV 100.0% 100.0% acactg---tttacacaaaagttgatggtgttgatg---------taga-attgtttgaaaataaaacaacattacctgt 2 SARS 95.5% 77.9% atgctg---tttacacaaaggtagatggtattgatg---------tggagatc-tttgaaaataagacaacacttcctgt 3 MERS 74.7% 47.2% a----gatcttcac-caagag----tggcgttaatgacatttgtatg-------tttgagaataaaaccactttgcctac consensus/100% A....G...TTsAC.CAAuuG....TGGsuTTuATG.........Tu.......TTTGAuAATAAuACsACssTsCCTus consensus/90% A....G...TTsAC.CAAuuG....TGGsuTTuATG.........Tu.......TTTGAuAATAAuACsACssTsCCTus consensus/80% A....G...TTsAC.CAAuuG....TGGsuTTuATG.........Tu.......TTTGAuAATAAuACsACssTsCCTus consensus/70% A....G...TTsAC.CAAuuG....TGGsuTTuATG.........Tu.......TTTGAuAATAAuACsACssTsCCTus cov pid 24801 . . . . : . . . 24880 1 2019nCoV 100.0% 100.0% taatgtagcatttgagctttgggctaagcgca----ac------------att--aaaccagtaccagaggtgaaaatac 2 SARS 95.5% 77.9% taatgttgcatttgagctttgggctaagcgta----ac------------att--aaaccagtgccagagattaagatac 3 MERS 74.7% 47.2% taatatagcttttgaactctatgctaagcgtgctgtacgctcgcatcccgatttcaaat---tgc------------tac consensus/100% TAATuTsGCsTTTGAuCTsTusGCTAAGCGsu....AC............ATT..AAAs...TuC............TAC consensus/90% TAATuTsGCsTTTGAuCTsTusGCTAAGCGsu....AC............ATT..AAAs...TuC............TAC consensus/80% TAATuTsGCsTTTGAuCTsTusGCTAAGCGsu....AC............ATT..AAAs...TuC............TAC consensus/70% TAATuTsGCsTTTGAuCTsTusGCTAAGCGsu....AC............ATT..AAAs...TuC............TAC cov pid 24881 . 9 . . . . : . 24960 1 2019nCoV 100.0% 100.0% tcaat----aatttgggtgtggacattgctgcta--atactgtgatc------tgggactacaaaagagatgctccagca 2 SARS 95.5% 77.9% tcaat----aatttgggtgttgatatcgctgcta--atactgtaatc------tgggactacaaaagagaagccccagca 3 MERS 74.7% 47.2% acaatttacaa-------gcagacatt--tgctacaa----gt--tcgtcctttgggattatgaacg--------tagca consensus/100% sCAAT....AA.......GssGAsATs..TGCTA..A....GT..TC......TGGGAsTAsuAAsG........sAGCA consensus/90% sCAAT....AA.......GssGAsATs..TGCTA..A....GT..TC......TGGGAsTAsuAAsG........sAGCA consensus/80% sCAAT....AA.......GssGAsATs..TGCTA..A....GT..TC......TGGGAsTAsuAAsG........sAGCA consensus/70% sCAAT....AA.......GssGAsATs..TGCTA..A....GT..TC......TGGGAsTAsuAAsG........sAGCA cov pid 24961 . . . 0 . . . . 25040 1 2019nCoV 100.0% 100.0% cata--tat-------ctactattggtgtttgttctatg-------actgacatag--------ccaa----gaa----- 2 SARS 95.5% 77.9% catg--tat-------ctacaataggtgtctgcacaatg-------actgacattg--------ccaa----gaa----- 3 MERS 74.7% 47.2% -atatttatggtactgctactattggtgt-------atgtaagtacactgatattgatgttaattcagctttgaatatat consensus/100% .ATu..TAT.......CTACsATsGGTGT.......ATG.......ACTGAsATsG........sCAu....GAA..... consensus/90% .ATu..TAT.......CTACsATsGGTGT.......ATG.......ACTGAsATsG........sCAu....GAA..... consensus/80% .ATu..TAT.......CTACsATsGGTGT.......ATG.......ACTGAsATsG........sCAu....GAA..... consensus/70% .ATu..TAT.......CTACsATsGGTGT.......ATG.......ACTGAsATsG........sCAu....GAA..... cov pid 25041 : . . . . 1 . . 25120 1 2019nCoV 100.0% 100.0% ------accaac-tga-aa---cgatttgtgcac----------cactcactgtct-------------------ttttt 2 SARS 95.5% 77.9% ------acctac-tga-gagtgc---ttgttctt----------cacttactgtct-------------------tgttt 3 MERS 74.7% 47.2% gttttgacatacgcgataa-------ttgttcattggagaagttca-----tgtctactcccaatgccatctttatttct consensus/100% ......ACssAC.sGA.uA.......TTGTsCss..........CA.....TGTCT...................TsTsT consensus/90% ......ACssAC.sGA.uA.......TTGTsCss..........CA.....TGTCT...................TsTsT consensus/80% ......ACssAC.sGA.uA.......TTGTsCss..........CA.....TGTCT...................TsTsT consensus/70% ......ACssAC.sGA.uA.......TTGTsCss..........CA.....TGTCT...................TsTsT cov pid 25121 . . : . . . . 2 25200 1 2019nCoV 100.0% 100.0% gatggtagagttgatggtcaagtagacttatttagaaatgccc--gtaatggt--gttcttattacagaaggt--agtgt 2 SARS 95.5% 77.9% gatggtagagtggaaggacaggtagacctttttagaaacgccc--gtaatggt--gttttaataacagaaggttca--gt 3 MERS 74.7% 47.2% gatagaaaaat-------ca-------------agaaatacccttgta-tggtaggtcctgatta-------t------- consensus/100% GATuGsAuAuT.......CA.............AGAAAsuCCC..GTA.TGGT..GTssTsATsA.......T....... consensus/90% GATuGsAuAuT.......CA.............AGAAAsuCCC..GTA.TGGT..GTssTsATsA.......T....... consensus/80% GATuGsAuAuT.......CA.............AGAAAsuCCC..GTA.TGGT..GTssTsATsA.......T....... consensus/70% GATuGsAuAuT.......CA.............AGAAAsuCCC..GTA.TGGT..GTssTsATsA.......T....... cov pid 25201 . . . . : . . . 25280 1 2019nCoV 100.0% 100.0% taaaggttta-------caaccatctgtaggtcccaa-acaagctagtctta------atggagtcacattaattggaga 2 SARS 95.5% 77.9% caaaggtctaacaccttcaa--------agggaccagcacaagctagcgtca------atggagtcacattaattggaga 3 MERS 74.7% 47.2% -----gctta----cttcaa-----t---ggt----------gcta---tcatccgtgat--agtgatgtt-gttaaaca consensus/100% .....GssTA.......CAA.........GGs..........GCTA...TsA......AT..AGTsAsuTT.uTTuuAsA consensus/90% .....GssTA.......CAA.........GGs..........GCTA...TsA......AT..AGTsAsuTT.uTTuuAsA consensus/80% .....GssTA.......CAA.........GGs..........GCTA...TsA......AT..AGTsAsuTT.uTTuuAsA consensus/70% .....GssTA.......CAA.........GGs..........GCTA...TsA......AT..AGTsAsuTT.uTTuuAsA cov pid 25281 . 3 . . . . : . 25360 1 2019nCoV 100.0% 100.0% agccgtaaaaacacagttcaattat---tataagaaagttgatggtgttgtccaacaat--------------tacctga 2 SARS 95.5% 77.9% atcagtaaaaacacagtttaactac---tttaagaaagtagacggcattattcaacagt--------------tgcctga 3 MERS 74.7% 47.2% accagtga------agttc---tacttgtataagaaagt-------------caataatgagtttattgatccta-ctga consensus/100% AsCsGTuA......AGTTs...TAs...TsTAAGAAAGT.............CAAsAuT..............Tu.CTGA consensus/90% AsCsGTuA......AGTTs...TAs...TsTAAGAAAGT.............CAAsAuT..............Tu.CTGA consensus/80% AsCsGTuA......AGTTs...TAs...TsTAAGAAAGT.............CAAsAuT..............Tu.CTGA consensus/70% AsCsGTuA......AGTTs...TAs...TsTAAGAAAGT.............CAAsAuT..............Tu.CTGA cov pid 25361 . . . 4 . . . . 25440 1 2019nCoV 100.0% 100.0% a---acttactttactcagagt---------agaaatttacaagaatttaaaccca---------ggagtc--aaatgga 2 SARS 95.5% 77.9% a---acctactttactcagagc---------agagacttagaggattttaagccca---------ga--tcacaaatgga 3 MERS 74.7% 47.2% gtgtatttac---actcagagtcgctcttgtagtgactt-------------cctacccctttctga---c----atgga consensus/100% u...AssTAC...ACTCAGAGs.........AGsuAsTT.............CCsA.........Gu...C....ATGGA consensus/90% u...AssTAC...ACTCAGAGs.........AGsuAsTT.............CCsA.........Gu...C....ATGGA consensus/80% u...AssTAC...ACTCAGAGs.........AGsuAsTT.............CCsA.........Gu...C....ATGGA consensus/70% u...AssTAC...ACTCAGAGs.........AGsuAsTT.............CCsA.........Gu...C....ATGGA cov pid 25441 : . . . . 5 . . 25520 1 2019nCoV 100.0% 100.0% --aattga-tttct------tagaattagctatggatgaattcattgaacggtataaattagaaggctatgccttcgaac 2 SARS 95.5% 77.9% --aactgactttct------c-gagctcgctatggatgaattcatacagcgatataagctcgagggctatgccttcgaac 3 MERS 74.7% 47.2% gaaa--gactttctatctttt-ga--tagt----gatgttttcattaagaagtatggcttggaaaactatgcttttgagc consensus/100% ..AA..GA.TTTCT......s.GA..TsGs....GATGssTTCATssAusuuTATuussTsGAuuuCTATGCsTTsGAuC consensus/90% ..AA..GA.TTTCT......s.GA..TsGs....GATGssTTCATssAusuuTATuussTsGAuuuCTATGCsTTsGAuC consensus/80% ..AA..GA.TTTCT......s.GA..TsGs....GATGssTTCATssAusuuTATuussTsGAuuuCTATGCsTTsGAuC consensus/70% ..AA..GA.TTTCT......s.GA..TsGs....GATGssTTCATssAusuuTATuussTsGAuuuCTATGCsTTsGAuC cov pid 25521 . . : . . . . 6 25600 1 2019nCoV 100.0% 100.0% atatcgtttatggagattttagtcata----gtcagttaggtggtttacatctactgattggact-----agctaaacgt 2 SARS 95.5% 77.9% acatcgtttatggagatttcagtcatg----gacaacttggcggtcttcatttaatgataggctt-----agccaagcgc 3 MERS 74.7% 47.2% acgtagtctatggagacttctctcatactacg----ttaggcggtcttcacttgcttattggtttatacaag--aagca- consensus/100% AsuTsGTsTATGGAGAsTTsssTCATu....G....sTsGGsGGTsTsCAssTusTsATsGGssT.....AG..AAuCu. consensus/90% AsuTsGTsTATGGAGAsTTsssTCATu....G....sTsGGsGGTsTsCAssTusTsATsGGssT.....AG..AAuCu. consensus/80% AsuTsGTsTATGGAGAsTTsssTCATu....G....sTsGGsGGTsTsCAssTusTsATsGGssT.....AG..AAuCu. consensus/70% AsuTsGTsTATGGAGAsTTsssTCATu....G....sTsGGsGGTsTsCAssTusTsATsGGssT.....AG..AAuCu. cov pid 25601 . . . . : . . . 25680 1 2019nCoV 100.0% 100.0% ttta-aggaa--tcaccttttgaattagaagattttattcctatggacagtacag------ttaaa--------aactat 2 SARS 95.5% 77.9% tc-acaagat--tcaccacttaaattagaggattttatccctatggacagcacag------tgaaa--------aattac 3 MERS 74.7% 47.2% ---acaggaaggtca----------ta-------ttat---tatgga------agaaatgctaaaaggtagctcaacta- consensus/100% ...A.AuGAs..TCA..........TA.......TTAT...TATGGA......AG......TsAAA........AAsTA. consensus/90% ...A.AuGAs..TCA..........TA.......TTAT...TATGGA......AG......TsAAA........AAsTA. consensus/80% ...A.AuGAs..TCA..........TA.......TTAT...TATGGA......AG......TsAAA........AAsTA. consensus/70% ...A.AuGAs..TCA..........TA.......TTAT...TATGGA......AG......TsAAA........AAsTA. cov pid 25681 . 7 . . . . : . 25760 1 2019nCoV 100.0% 100.0% ttcataac-------------agatgcgcaaaca----ggttcatctaagtgtgtgtgttctgttattgatttatta--- 2 SARS 95.5% 77.9% ttcataac-------------agatgcgcaaaca----ggttcatcaaaatgtgtgtgttctgtgattgatctttta--- 3 MERS 74.7% 47.2% ttcataactattttattactgaga----ctaacacagcggctt-ttaaggcg-gtgtgttctgttatagat---ttaaag consensus/100% TTCATAAC.............AGA....CsAACA....GGsTs.TssAuusG.GTGTGTTCTGTsATsGAT...TTA... consensus/90% TTCATAAC.............AGA....CsAACA....GGsTs.TssAuusG.GTGTGTTCTGTsATsGAT...TTA... consensus/80% TTCATAAC.............AGA....CsAACA....GGsTs.TssAuusG.GTGTGTTCTGTsATsGAT...TTA... consensus/70% TTCATAAC.............AGA....CsAACA....GGsTs.TssAuusG.GTGTGTTCTGTsATsGAT...TTA... cov pid 25761 . . . 8 . . . . 25840 1 2019nCoV 100.0% 100.0% cttgatgattttgttgaaataat-----aaaatcccaaga-tttatctgtagtttctaaggttgtcaaagtgactattga 2 SARS 95.5% 77.9% cttgatgactttgtcgagataat-----aaagtcacaaga-tttgtcagtgatttcaaaagtggtcaaggttacaattga 3 MERS 74.7% 47.2% cttgacgactttgtt---atgattttaaagagtc--aagaccttggc-gtagtatccaaggttgtcaaggttcctattga consensus/100% CTTGAsGAsTTTGTs...ATuAT.....AuAuTC..AAGA.sTTusC.GTuuTsTCsAAuGTsGTCAAuGTssCsATTGA consensus/90% CTTGAsGAsTTTGTs...ATuAT.....AuAuTC..AAGA.sTTusC.GTuuTsTCsAAuGTsGTCAAuGTssCsATTGA consensus/80% CTTGAsGAsTTTGTs...ATuAT.....AuAuTC..AAGA.sTTusC.GTuuTsTCsAAuGTsGTCAAuGTssCsATTGA consensus/70% CTTGAsGAsTTTGTs...ATuAT.....AuAuTC..AAGA.sTTusC.GTuuTsTCsAAuGTsGTCAAuGTssCsATTGA cov pid 25841 : . . . . 9 . . 25920 1 2019nCoV 100.0% 100.0% ct-----atacagaaatttcatttatgctttggtgtaaagatggccatgtagaaacattttacccaaaattacaatctag 2 SARS 95.5% 77.9% ct-----atgctgaaatttcattcatgctttggtgtaaggatggacatgttgaaaccttctacccaaaactacaagcaag 3 MERS 74.7% 47.2% cttaacaatg-----attgagtttatgttatggtgtaaggatggacaggttcaaaccttctaccc--------------- consensus/100% CT.....ATu.....ATTssuTTsATGsTsTGGTGTAAuGATGGsCAsGTssAAACsTTsTACCC............... consensus/90% CT.....ATu.....ATTssuTTsATGsTsTGGTGTAAuGATGGsCAsGTssAAACsTTsTACCC............... consensus/80% CT.....ATu.....ATTssuTTsATGsTsTGGTGTAAuGATGGsCAsGTssAAACsTTsTACCC............... consensus/70% CT.....ATu.....ATTssuTTsATGsTsTGGTGTAAuGATGGsCAsGTssAAACsTTsTACCC............... cov pid 25921 . . : . . . . 0 26000 1 2019nCoV 100.0% 100.0% tcaa------------gcg---tggcaaccgggtgttgctatgcc-----taatctt-ta-----caaaatgcaaa---- 2 SARS 95.5% 77.9% tcaa------------gcg---tggcaaccaggtgttgcgatgcc-----taa-cttgta-----caagatgcaaa---- 3 MERS 74.7% 47.2% tcgactccaggcttctgcagattggaaacctggtcatgcaatgccatccct---ctt-taaagttcaaaatgtaaacctt consensus/100% TCuA............GCu...TGGsAACCsGGTssTGCsATGCC.....T...CTT.TA.....CAAuATGsAAA.... consensus/90% TCuA............GCu...TGGsAACCsGGTssTGCsATGCC.....T...CTT.TA.....CAAuATGsAAA.... consensus/80% TCuA............GCu...TGGsAACCsGGTssTGCsATGCC.....T...CTT.TA.....CAAuATGsAAA.... consensus/70% TCuA............GCu...TGGsAACCsGGTssTGCsATGCC.....T...CTT.TA.....CAAuATGsAAA.... cov pid 26001 . . . . : . . . 26080 1 2019nCoV 100.0% 100.0% gaatgctattagaaaagtgtgacctt--------caa--aat-------tatg-------gtgatagtgcaacat----t 2 SARS 95.5% 77.9% gaatgcttcttgaaaagtgtgacctt--------cag--aat-------tatg-------gtgaaaatgc----tgttat 3 MERS 74.7% 47.2% gaacgt-----------tgtgagcttgctaattacaagcaatctattcctatgcctcgcggtg----tgc---------- consensus/100% GAAsGs...........TGTGAsCTT........CAu..AAT.......TATG.......GTG....TGC.......... consensus/90% GAAsGs...........TGTGAsCTT........CAu..AAT.......TATG.......GTG....TGC.......... consensus/80% GAAsGs...........TGTGAsCTT........CAu..AAT.......TATG.......GTG....TGC.......... consensus/70% GAAsGs...........TGTGAsCTT........CAu..AAT.......TATG.......GTG....TGC.......... cov pid 26081 . 1 . . . . : . 26160 1 2019nCoV 100.0% 100.0% acctaaaggcataatgatgaatgtcgcaaaatatactcaactgtgtcaatatttaaacacatta--acattagctgtacc 2 SARS 95.5% 77.9% accaaaaggaataatgatgaatgtcgcaaagtatactcaactgtgtcaatacttaaatacactt--actttagctgtacc 3 MERS 74.7% 47.2% ac--------------atgaacatcgctaaatatatgcaattgtgccagtatttaaatac--ttgcacattagccgtgcc consensus/100% AC..............ATGAAsuTCGCsAAuTATAssCAAsTGTGsCAuTAsTTAAAsAC..Ts..ACsTTAGCsGTuCC consensus/90% AC..............ATGAAsuTCGCsAAuTATAssCAAsTGTGsCAuTAsTTAAAsAC..Ts..ACsTTAGCsGTuCC consensus/80% AC..............ATGAAsuTCGCsAAuTATAssCAAsTGTGsCAuTAsTTAAAsAC..Ts..ACsTTAGCsGTuCC consensus/70% AC..............ATGAAsuTCGCsAAuTATAssCAAsTGTGsCAuTAsTTAAAsAC..Ts..ACsTTAGCsGTuCC cov pid 26161 . . . 2 . . . . 26240 1 2019nCoV 100.0% 100.0% --ctataatatgagagttatacattttggtgctggttctgataaaggagttgcaccaggtacagct--gttttaagacag 2 SARS 95.5% 77.9% --ctacaacatgagagttattcactttggtgctggctctgataaaggagttgcaccaggtacagct--gtgctcagacaa 3 MERS 74.7% 47.2% tgc--caatatgcgtgttatacattttggcgctggttctgataaaggtatcgctcctggtac--ctcagttttacgacag consensus/100% ..C..sAAsATGsGsGTTATsCAsTTTGGsGCTGGsTCTGATAAAGGsuTsGCsCCsGGTAC..CT..GTssTssGACAu consensus/90% ..C..sAAsATGsGsGTTATsCAsTTTGGsGCTGGsTCTGATAAAGGsuTsGCsCCsGGTAC..CT..GTssTssGACAu consensus/80% ..C..sAAsATGsGsGTTATsCAsTTTGGsGCTGGsTCTGATAAAGGsuTsGCsCCsGGTAC..CT..GTssTssGACAu consensus/70% ..C..sAAsATGsGsGTTATsCAsTTTGGsGCTGGsTCTGATAAAGGsuTsGCsCCsGGTAC..CT..GTssTssGACAu cov pid 26241 : . . . . 3 . . 26320 1 2019nCoV 100.0% 100.0% tggttgcctacgg--gtacgctgcttgtcgat--tcagatcttaatgactttgtctctgatgcagattcaactttgattg 2 SARS 95.5% 77.9% tggttgccaactg--gcacactacttgtcgat--tcagatcttaatgacttcgtctccgacgcagattctactttaattg 3 MERS 74.7% 47.2% tggcttcctacagatgc-catta-ttatagataat--gatttaaatgagttcgtgtcagatgctgacataactttatttg consensus/100% TGGsTsCCsACsG..Gs.CusTu.TTuTsGAT..T..GATsTsAATGAsTTsGTsTCsGAsGCsGAssssACTTTusTTG consensus/90% TGGsTsCCsACsG..Gs.CusTu.TTuTsGAT..T..GATsTsAATGAsTTsGTsTCsGAsGCsGAssssACTTTusTTG consensus/80% TGGsTsCCsACsG..Gs.CusTu.TTuTsGAT..T..GATsTsAATGAsTTsGTsTCsGAsGCsGAssssACTTTusTTG consensus/70% TGGsTsCCsACsG..Gs.CusTu.TTuTsGAT..T..GATsTsAATGAsTTsGTsTCsGAsGCsGAssssACTTTusTTG cov pid 26321 . . : . . . . 4 26400 1 2019nCoV 100.0% 100.0% gtgattgtgcaactgtacata-cagctaataaatgggatctcattattagtgatatgtacgaccctaagactaaaaatgt 2 SARS 95.5% 77.9% gagactgtgcaacagtacata-cggctaataaatgggaccttattattagcgatatgtatgaccctaggaccaaacatgt 3 MERS 74.7% 47.2% gagattgtgtaactgtacgtgtcggccaacaagtgg-atcttgttatttccgacatgtatgatcctactactaagaatgt consensus/100% GsGAsTGTGsAACsGTACuTu.CuGCsAAsAAuTGG.AsCTsuTTATTsssGAsATGTAsGAsCCTAssACsAAusATGT consensus/90% GsGAsTGTGsAACsGTACuTu.CuGCsAAsAAuTGG.AsCTsuTTATTsssGAsATGTAsGAsCCTAssACsAAusATGT consensus/80% GsGAsTGTGsAACsGTACuTu.CuGCsAAsAAuTGG.AsCTsuTTATTsssGAsATGTAsGAsCCTAssACsAAusATGT consensus/70% GsGAsTGTGsAACsGTACuTu.CuGCsAAsAAuTGG.AsCTsuTTATTsssGAsATGTAsGAsCCTAssACsAAusATGT cov pid 26401 . . . . : . . . 26480 1 2019nCoV 100.0% 100.0% tacaaaag--aa-aatgactctaaagagggtttt----ttcacttacatttgtgg----gtttatacaacaaaagctagc 2 SARS 95.5% 77.9% gacaaaag--ag-aatgactctaaagaagggttt----ttcacttatctgtgtgg----atttataaagcaaaaactagc 3 MERS 74.7% 47.2% aaca---ggtagtaatgagtc-aaag---gctttattctttacttacctgtgtaacctcattaata----ataatcttgc consensus/100% sACA...G..Au.AATGAsTC.AAAG...GsTTT....TTsACTTAssTsTGTuu....uTTsATA....AsAAsCTsGC consensus/90% sACA...G..Au.AATGAsTC.AAAG...GsTTT....TTsACTTAssTsTGTuu....uTTsATA....AsAAsCTsGC consensus/80% sACA...G..Au.AATGAsTC.AAAG...GsTTT....TTsACTTAssTsTGTuu....uTTsATA....AsAAsCTsGC consensus/70% sACA...G..Au.AATGAsTC.AAAG...GsTTT....TTsACTTAssTsTGTuu....uTTsATA....AsAAsCTsGC cov pid 26481 . 5 . . . . : . 26560 1 2019nCoV 100.0% 100.0% tcttggaggttccgtggctataaagataacagaacattcttggaatgctgatctttataagctcatgggacacttcgcat 2 SARS 95.5% 77.9% cctgggtggttctatagctgtaaagataacagagcattcttggaatgctgacctttacaagcttatgggccatttctcat 3 MERS 74.7% 47.2% tcttggtgggtctgttgctattaaaataacagaacactcttggagcgttgaactttatgaacttatgggaaaatttgctt consensus/100% sCTsGGsGGsTCsuTsGCTuTsAAuATAACAGAuCAsTCTTGGAusGsTGAsCTTTAsuAuCTsATGGGssAsTTssCsT consensus/90% sCTsGGsGGsTCsuTsGCTuTsAAuATAACAGAuCAsTCTTGGAusGsTGAsCTTTAsuAuCTsATGGGssAsTTssCsT consensus/80% sCTsGGsGGsTCsuTsGCTuTsAAuATAACAGAuCAsTCTTGGAusGsTGAsCTTTAsuAuCTsATGGGssAsTTssCsT consensus/70% sCTsGGsGGsTCsuTsGCTuTsAAuATAACAGAuCAsTCTTGGAusGsTGAsCTTTAsuAuCTsATGGGssAsTTssCsT cov pid 26561 . . . 6 . . . . 26640 1 2019nCoV 100.0% 100.0% ggtggacagcctttgtt------actaatgtgaatgcgtcatcatctgaagcat---tttta---attggatg--taatt 2 SARS 95.5% 77.9% ggtggacagcttttgtt------acaaatgtaaatgcatcatcatcggaagcat---tttta---attgg--ggctaact 3 MERS 74.7% 47.2% ggtggac------tgttttctgcaccaatgcaaatgcatcctcatctgaaggattcctcttaggtat--------taatt consensus/100% GGTGGAC......TGTT......ACsAATGsuAATGCuTCsTCATCsGAAGsAT...TsTTA...AT........TAAsT consensus/90% GGTGGAC......TGTT......ACsAATGsuAATGCuTCsTCATCsGAAGsAT...TsTTA...AT........TAAsT consensus/80% GGTGGAC......TGTT......ACsAATGsuAATGCuTCsTCATCsGAAGsAT...TsTTA...AT........TAAsT consensus/70% GGTGGAC......TGTT......ACsAATGsuAATGCuTCsTCATCsGAAGsAT...TsTTA...AT........TAAsT cov pid 26641 : . . . . 7 . . 26720 1 2019nCoV 100.0% 100.0% atcttgg-------caaacc-acgcgaacaa-atagatggttatgtcatgcatgcaaattacatattttggaggaa---t 2 SARS 95.5% 77.9% atcttgg-------caagccgaag-gaacaa-attgatggctataccatgcatgctaactacattttctggaggaa---c 3 MERS 74.7% 47.2% a-cttgggtactattaaa-------gaa-aatatagatggtggtgctatgcacgccaactatatattttggagaaattcc consensus/100% A.CTTGG.......sAAu.......GAA.AA.ATsGATGGssuTussATGCAsGCsAAsTAsATsTTsTGGAGuAA...s consensus/90% A.CTTGG.......sAAu.......GAA.AA.ATsGATGGssuTussATGCAsGCsAAsTAsATsTTsTGGAGuAA...s consensus/80% A.CTTGG.......sAAu.......GAA.AA.ATsGATGGssuTussATGCAsGCsAAsTAsATsTTsTGGAGuAA...s consensus/70% A.CTTGG.......sAAu.......GAA.AA.ATsGATGGssuTussATGCAsGCsAAsTAsATsTTsTGGAGuAA...s cov pid 26721 . . : . . . . 8 26800 1 2019nCoV 100.0% 100.0% acaaatccaattcagttg--tct---t-cctattctttatttga-----catgagtaaatttccccttaaattaaggggt 2 SARS 95.5% 77.9% acaaatcctatccagttg--tct---t-cctattcactctttga-----catgagcaaatttcctcttaaattaagagga 3 MERS 74.7% 47.2% ac---tcctat------gaatctgagtacttactcactttttgatttatc-----caagtttcaattaaaattaaaagga consensus/100% AC...TCCsAT......G..TCT...T.CsTAsTCssTsTTTGA.....C.....sAAuTTTCsssTsAAATTAAuuGGs consensus/90% AC...TCCsAT......G..TCT...T.CsTAsTCssTsTTTGA.....C.....sAAuTTTCsssTsAAATTAAuuGGs consensus/80% AC...TCCsAT......G..TCT...T.CsTAsTCssTsTTTGA.....C.....sAAuTTTCsssTsAAATTAAuuGGs consensus/70% AC...TCCsAT......G..TCT...T.CsTAsTCssTsTTTGA.....C.....sAAuTTTCsssTsAAATTAAuuGGs cov pid 26801 . . . . : . . . 26880 1 2019nCoV 100.0% 100.0% ac-----tgctgttatgtct-ttaaa-agaaggtcaaatcaatga-----tatgattttat-ctcttctt----agtaaa 2 SARS 95.5% 77.9% ac-----tgctgtaatgtctcttaaggagaa--tcaaatcaatga-----tatgat-ttattctcttctg----gaaaaa 3 MERS 74.7% 47.2% acaccagttcttcaat-----taaaggaga--gtcaaattaacgaactcgta--at---at-ctctcctgtcgcag---- consensus/100% AC.....TsCTsssAT.....TsAAu.AGA...TCAAATsAAsGA.....TA..AT...AT.CTCTsCTs....uu.... consensus/90% AC.....TsCTsssAT.....TsAAu.AGA...TCAAATsAAsGA.....TA..AT...AT.CTCTsCTs....uu.... consensus/80% AC.....TsCTsssAT.....TsAAu.AGA...TCAAATsAAsGA.....TA..AT...AT.CTCTsCTs....uu.... consensus/70% AC.....TsCTsssAT.....TsAAu.AGA...TCAAATsAAsGA.....TA..AT...AT.CTCTsCTs....uu.... cov pid 26881 . 9 . . . . : . 26960 1 2019nCoV 100.0% 100.0% ggtaga---cttata-attagagaaaacaa---------cagagttgttatttctagtgatgttcttgttaacaactaaa 2 SARS 95.5% 77.9% ggtagg---cttatc-attagagaaaacaa---------cagagttgtggtttcaagtgatattcttgttaacaactaaa 3 MERS 74.7% 47.2% ggtaagttacttatccgt-------gacaatgatacactcag---tgt---ttctactgatgttcttgttaacacctaca consensus/100% GGTAuu...CTTATs.uT.......uACAA.........CAG...TGT...TTCsAsTGATuTTCTTGTTAACAsCTAsA consensus/90% GGTAuu...CTTATs.uT.......uACAA.........CAG...TGT...TTCsAsTGATuTTCTTGTTAACAsCTAsA consensus/80% GGTAuu...CTTATs.uT.......uACAA.........CAG...TGT...TTCsAsTGATuTTCTTGTTAACAsCTAsA consensus/70% GGTAuu...CTTATs.uT.......uACAA.........CAG...TGT...TTCsAsTGATuTTCTTGTTAACAsCTAsA cov pid 26961 . . . 0 . . . . 27040 1 2019nCoV 100.0% 100.0% cgaa-----caatgtt--tgt---------ttttcttgtt-----ttattgccactagtctctagtcagtgtgttaatct 2 SARS 95.5% 77.9% cgaa-----c-atgtt--tat---------tt-tcttattatttcttactctcactagt----ggt-agtg-----acct 3 MERS 74.7% 47.2% -gaaagttac---gttgatgtagggccagatt---ctgtta---------------agtc---------tg-------ct consensus/100% .GAA.....C...GTT..TuT.........TT...sTuTT................AGT..........TG.......CT consensus/90% .GAA.....C...GTT..TuT.........TT...sTuTT................AGT..........TG.......CT consensus/80% .GAA.....C...GTT..TuT.........TT...sTuTT................AGT..........TG.......CT consensus/70% .GAA.....C...GTT..TuT.........TT...sTuTT................AGT..........TG.......CT cov pid 27041 : . . . . 1 . . 27120 1 2019nCoV 100.0% 100.0% tacaaccag-----------------------aactc--aat-taccccctgcatacactaattctttcacacgt----- 2 SARS 95.5% 77.9% tg--accggtgcaccacttttgatgatgttcaagctcctaat-tacactcaacatac---------ttca----tctatg 3 MERS 74.7% 47.2% tg---------------tattga-g--gtt---------gatataca----acagac--------tttc----------- consensus/100% Tu.....................................uAT.TACs....uCAsAC.........TTC........... consensus/90% Tu.....................................uAT.TACs....uCAsAC.........TTC........... consensus/80% Tu.....................................uAT.TACs....uCAsAC.........TTC........... consensus/70% Tu.....................................uAT.TACs....uCAsAC.........TTC........... cov pid 27121 . . : . . . . 2 27200 1 2019nCoV 100.0% 100.0% ---ggtgtttattaccctgacaaagttt---tcagatc-----ctcagttttacattcaactcaggacttgtt-ct---- 2 SARS 95.5% 77.9% aggggggtttactatcctgatgaaattt---ttagatcagacactc---ttt--atttaactcaggatttatttct---- 3 MERS 74.7% 47.2% --------tt-------tgataaaacttggcctaggcca---------------att--------ga--tgtttctaagg consensus/100% ........TT.......TGAsuAAusTT...ssAGusC................ATT........GA..TuTT.CT.... consensus/90% ........TT.......TGAsuAAusTT...ssAGusC................ATT........GA..TuTT.CT.... consensus/80% ........TT.......TGAsuAAusTT...ssAGusC................ATT........GA..TuTT.CT.... consensus/70% ........TT.......TGAsuAAusTT...ssAGusC................ATT........GA..TuTT.CT.... cov pid 27201 . . . . : . . . 27280 1 2019nCoV 100.0% 100.0% --------------tacctttc-----------ttttccaatgttacttggttccat-gctatacatgtctctgggacca 2 SARS 95.5% 77.9% --------------t-ccattt-----------tattctaatgttacagggtttcat-actat---------------ta 3 MERS 74.7% 47.2% ctgacggtattatatacc-ctcaaggccgtacatattctaa-------------cataactat-ca-----ct------- consensus/100% ..............T.CC.sTs...........TsTTCsAA.............CAT.uCTAT................. consensus/90% ..............T.CC.sTs...........TsTTCsAA.............CAT.uCTAT................. consensus/80% ..............T.CC.sTs...........TsTTCsAA.............CAT.uCTAT................. consensus/70% ..............T.CC.sTs...........TsTTCsAA.............CAT.uCTAT................. cov pid 27281 . 3 . . . . : . 27360 1 2019nCoV 100.0% 100.0% atggtactaagaggt----ttgataaccctgtcctaccatttaatg------atgg---------tgtttattttgc--- 2 SARS 95.5% 77.9% atcatac------gt----ttggcaaccctgtcataccttttaagg------atgg---------tatttattttgc--- 3 MERS 74.7% 47.2% ----tatcaag--gtcttttt-----ccctatc----------agggagaccatggtgatatgtatgtttactctgcagg consensus/100% ....TAs......GT....TT.....CCCTuTC..........AsG......ATGG.........TuTTTAsTsTGC... consensus/90% ....TAs......GT....TT.....CCCTuTC..........AsG......ATGG.........TuTTTAsTsTGC... consensus/80% ....TAs......GT....TT.....CCCTuTC..........AsG......ATGG.........TuTTTAsTsTGC... consensus/70% ....TAs......GT....TT.....CCCTuTC..........AsG......ATGG.........TuTTTAsTsTGC... cov pid 27361 . . . 4 . . . . 27440 1 2019nCoV 100.0% 100.0% ---ttccactg---------------------------------------agaa-gtctaa-------ca------taat 2 SARS 95.5% 77.9% ---tgccacag---------------------------------------agaa-atcaaatgttgtccg------t--- 3 MERS 74.7% 47.2% acatgctacaggcacaactccacaaaagttgtttgtagctaactattctcaggacgtcaaa-------cagtttgctaa- consensus/100% ...TsCsACsG.......................................AGuA.uTCsAA.......Cu......T... consensus/90% ...TsCsACsG.......................................AGuA.uTCsAA.......Cu......T... consensus/80% ...TsCsACsG.......................................AGuA.uTCsAA.......Cu......T... consensus/70% ...TsCsACsG.......................................AGuA.uTCsAA.......Cu......T... cov pid 27441 : . . . . 5 . . 27520 1 2019nCoV 100.0% 100.0% aagaggctggatttttggtac-tactttagattcgaaga----cccagtccctac---------ttattgtta----ata 2 SARS 95.5% 77.9% ----ggttgggtttttggttc-tacc----at--gaaca----acaagtc---acagtcggtgattattatta----aca 3 MERS 74.7% 47.2% -------tgggtttgtcgtccgta---tag----gagcagctgccaattcc--actggcactg-ttattattagcccat- consensus/100% .......TGGuTTTsTsGTsC.TA..........GAusA....sCsAsTC...AC.........TTATTuTTA....As. consensus/90% .......TGGuTTTsTsGTsC.TA..........GAusA....sCsAsTC...AC.........TTATTuTTA....As. consensus/80% .......TGGuTTTsTsGTsC.TA..........GAusA....sCsAsTC...AC.........TTATTuTTA....As. consensus/70% .......TGGuTTTsTsGTsC.TA..........GAusA....sCsAsTC...AC.........TTATTuTTA....As. cov pid 27521 . . : . . . . 6 27600 1 2019nCoV 100.0% 100.0% acgctactaatgttgttattaa--agtctgtgaatttcaattttgtaatgatcca--tttttgggtg------------- 2 SARS 95.5% 77.9% attctactaatgttgttat--acgagcatgtaactttgaattgtgtgacaaccct--ttctttgctg------------- 3 MERS 74.7% 47.2% ---ctaccagcgctactat--acgaa-----aaattt-------------accctgcttttatgctgggttcttcagttg consensus/100% ...CTACsAusGsTusTAT..A..Au.....uAsTTT.............AsCCs..TTsTssGsTG............. consensus/90% ...CTACsAusGsTusTAT..A..Au.....uAsTTT.............AsCCs..TTsTssGsTG............. consensus/80% ...CTACsAusGsTusTAT..A..Au.....uAsTTT.............AsCCs..TTsTssGsTG............. consensus/70% ...CTACsAusGsTusTAT..A..Au.....uAsTTT.............AsCCs..TTsTssGsTG............. cov pid 27601 . . . . : . . . 27680 1 2019nCoV 100.0% 100.0% ----ttt--------at---taccacaaaaaca-acaaaagttggatggaaagtg-------------agttcagagttt 2 SARS 95.5% 77.9% ----tttctaaacccatgggta-cacagacacatacta---------------tg-------------a----------t 3 MERS 74.7% 47.2% gtaatttctcag---at-ggta----aaa------------------------tgggccgcttcttcaa--tca-----t consensus/100% ....TTT........AT...TA....AuA........................TG.............A..........T consensus/90% ....TTT........AT...TA....AuA........................TG.............A..........T consensus/80% ....TTT........AT...TA....AuA........................TG.............A..........T consensus/70% ....TTT........AT...TA....AuA........................TG.............A..........T cov pid 27681 . 7 . . . . : . 27760 1 2019nCoV 100.0% 100.0% attc--tagtgcgaa--taatt----------------gcactttt----gaa--------tatgtctct-ca-gccttt 2 SARS 95.5% 77.9% attcgataatgc--atttaatt----------------gcactttc----gag--------tacatatct-gatgccttt 3 MERS 74.7% 47.2% actc--tagttc--------ttttgcccgatggatgtggcactttacttagagctttttattgtat-tctaga-gcc--- consensus/100% AsTC..TAuTsC........TT................GCACTTTs....GAu........TusuT.TCT.sA.GCC... consensus/90% AsTC..TAuTsC........TT................GCACTTTs....GAu........TusuT.TCT.sA.GCC... consensus/80% AsTC..TAuTsC........TT................GCACTTTs....GAu........TusuT.TCT.sA.GCC... consensus/70% AsTC..TAuTsC........TT................GCACTTTs....GAu........TusuT.TCT.sA.GCC... cov pid 27761 . . . 8 . . . . 27840 1 2019nCoV 100.0% 100.0% tcttatggacct-tgaag-----gaaaa--ca---------gggtaatt----------------------tca------ 2 SARS 95.5% 77.9% tc-----g--ct-tgatgtttcagaaaagtca----------ggtaatt----------------------tta------ 3 MERS 74.7% 47.2% tc-----g--ctctg--------gaaa--tcattgtcctgctggcaattcctatacttcttttgccacttatcacactcc consensus/100% TC.....G..CT.TG........GAAA...CA..........GGsAATT......................TsA...... consensus/90% TC.....G..CT.TG........GAAA...CA..........GGsAATT......................TsA...... consensus/80% TC.....G..CT.TG........GAAA...CA..........GGsAATT......................TsA...... consensus/70% TC.....G..CT.TG........GAAA...CA..........GGsAATT......................TsA...... cov pid 27841 : . . . . 9 . . 27920 1 2019nCoV 100.0% 100.0% ---aaaatctta-gggaatttgtgtttaagaatattgatgg------ttat-tttaaaatatattctaag------caca 2 SARS 95.5% 77.9% ---aaca-cttacgagagtttgtgtttaaaaataaagatgggtttctctatgttta----------taagggctatca-- 3 MERS 74.7% 47.2% tgcaaca--------ga--ttgt-tct---------gatgg----c-----------aat------ta--------ca-- consensus/100% ...AAsA........GA..TTGT.TsT.........GATGG.........................TA........CA.. consensus/90% ...AAsA........GA..TTGT.TsT.........GATGG.........................TA........CA.. consensus/80% ...AAsA........GA..TTGT.TsT.........GATGG.........................TA........CA.. consensus/70% ...AAsA........GA..TTGT.TsT.........GATGG.........................TA........CA.. cov pid 27921 . . : . . . . 0 28000 1 2019nCoV 100.0% 100.0% cgcctattaat-ttagtgc--gt--ga--tct-ccctcagggtttt------t--cggctttagaacc-attggt---ag 2 SARS 95.5% 77.9% -acctatagat-gtagttc--gt--ga--tctaccttctgg--ttt------taac-actttgaaacctatt--tttaag 3 MERS 74.7% 47.2% ---------atcgtaatgccagtctgaactct-----------tttaaggagt----atttta------att-------- consensus/100% .........AT.sTAuTsC..GT..GA..TCT...........TTT......T....usTTTu......ATT........ consensus/90% .........AT.sTAuTsC..GT..GA..TCT...........TTT......T....usTTTu......ATT........ consensus/80% .........AT.sTAuTsC..GT..GA..TCT...........TTT......T....usTTTu......ATT........ consensus/70% .........AT.sTAuTsC..GT..GA..TCT...........TTT......T....usTTTu......ATT........ cov pid 28001 . . . . : . . . 28080 1 2019nCoV 100.0% 100.0% att-------tgc--caataggtat-----taacatcactaggtttc-------aaacttta--------cttg-c---- 2 SARS 95.5% 77.9% --t-------tgc--ctcttggtat-----taacatta--------c-------aaattttagagccattctta-cagcc 3 MERS 74.7% 47.2% --tacgtaactgcacctttatgtacacttataacattac-------cgaagatgagattttagagtggt--ttggca--- consensus/100% ..T.......TGC..CssTssGTAs.....TAACATsA........C.......AuAsTTTA.........TTu.C.... consensus/90% ..T.......TGC..CssTssGTAs.....TAACATsA........C.......AuAsTTTA.........TTu.C.... consensus/80% ..T.......TGC..CssTssGTAs.....TAACATsA........C.......AuAsTTTA.........TTu.C.... consensus/70% ..T.......TGC..CssTssGTAs.....TAACATsA........C.......AuAsTTTA.........TTu.C.... cov pid 28081 . 1 . . . . : . 28160 1 2019nCoV 100.0% 100.0% tttacatagaagttatttgactcctggtgattcttcttcagg----ttgg---acagctggt--gctgcagctt------ 2 SARS 95.5% 77.9% ttttca----------------cctg----------ctcaagacatttggggcac-----gtcagctgcagcct------ 3 MERS 74.7% 47.2% -ttacacaaa-------------ctg----------ctcaag------------------gt--gtt-ca-cctcttctc consensus/100% .TTsCA.................CTG..........sTCAuG..................GT..GsT.CA.CsT...... consensus/90% .TTsCA.................CTG..........sTCAuG..................GT..GsT.CA.CsT...... consensus/80% .TTsCA.................CTG..........sTCAuG..................GT..GsT.CA.CsT...... consensus/70% .TTsCA.................CTG..........sTCAuG..................GT..GsT.CA.CsT...... cov pid 28161 . . . 2 . . . . 28240 1 2019nCoV 100.0% 100.0% at-----tatgtgggtt------------at---ct----tcaa----cctaggacttt-tctattaaaatataatgaaa 2 SARS 95.5% 77.9% at-----tttgttggct------------at---ttaaagccaa----ct----acatt-tatgctcaagtatgatgaaa 3 MERS 74.7% 47.2% atctcggtatgttgatttgtacggcggcaatatgtt----tcaatttgcc----accttgcctgtt----tatgat---- consensus/100% AT.....TsTGTsGusT............AT...sT....sCAA....Cs....ACsTT.ssTusT....TATuAT.... consensus/90% AT.....TsTGTsGusT............AT...sT....sCAA....Cs....ACsTT.ssTusT....TATuAT.... consensus/80% AT.....TsTGTsGusT............AT...sT....sCAA....Cs....ACsTT.ssTusT....TATuAT.... consensus/70% AT.....TsTGTsGusT............AT...sT....sCAA....Cs....ACsTT.ssTusT....TATuAT.... cov pid 28241 : . . . . 3 . . 28320 1 2019nCoV 100.0% 100.0% atggaaccattacag----atgctgtagactgtgcacttgaccctctctcagaa---acaaagtgtacgttg-------- 2 SARS 95.5% 77.9% atggtacaatcacag----atgctgttgattgt-------------tctcaaaatccac----------ttgctgaactc 3 MERS 74.7% 47.2% -----actatta-agtattattctat--------catt--------cctc-------ac--agtattcgtt--------- consensus/100% .....ACsATsA.AG....ATsCTuT....................sCTC.......AC..........TT......... consensus/90% .....ACsATsA.AG....ATsCTuT....................sCTC.......AC..........TT......... consensus/80% .....ACsATsA.AG....ATsCTuT....................sCTC.......AC..........TT......... consensus/70% .....ACsATsA.AG....ATsCTuT....................sCTC.......AC..........TT......... cov pid 28321 . . : . . . . 4 28400 1 2019nCoV 100.0% 100.0% aaatccttcactgt--agaa-------------aaag-----gaa---------------tctat-----caaacttc-- 2 SARS 95.5% 77.9% aaatgct---ctgttaagagctttgagattgacaaag-----gaa---------------tttac-----cagacctc-- 3 MERS 74.7% 47.2% ----------ctatc-----------------caaagtgatagaaaagcttgggctgccttctacgtatataaacttcaa consensus/100% ..........CTuT...................AAAG.....GAA...............TsTAs.....sAuACsTC.. consensus/90% ..........CTuT...................AAAG.....GAA...............TsTAs.....sAuACsTC.. consensus/80% ..........CTuT...................AAAG.....GAA...............TsTAs.....sAuACsTC.. consensus/70% ..........CTuT...................AAAG.....GAA...............TsTAs.....sAuACsTC.. cov pid 28401 . . . . : . . . 28480 1 2019nCoV 100.0% 100.0% ----taactt----------------------------------tagagt-----ccaaccaacagaatctattgttaga 2 SARS 95.5% 77.9% ----taattt----------------------------------cagggttgttccc--tcaggaga---tgttgtgaga 3 MERS 74.7% 47.2% ccgttaactttcctgttggatttttctgttgatggttatatacgcagagctat-----------aga--ctgt-----gg consensus/100% ....TAAsTT..................................sAGuGs..............AGA...TuT.....Gu consensus/90% ....TAAsTT..................................sAGuGs..............AGA...TuT.....Gu consensus/80% ....TAAsTT..................................sAGuGs..............AGA...TuT.....Gu consensus/70% ....TAAsTT..................................sAGuGs..............AGA...TuT.....Gu cov pid 28481 . 5 . . . . : . 28560 1 2019nCoV 100.0% 100.0% tttcctaat-att----acaa----act-----tgtg--ccctt-----ttggt---gaagttt-ttaacgccaccagat 2 SARS 95.5% 77.9% ttccctaat-att----acaa----act-----tgtg--tcctt-----ttgga---gaggttt-ttaatgctactaaat 3 MERS 74.7% 47.2% ttt--taatgatttgtcacaactccactgctcatatgaatccttcgatgttgaatctggagtttatt--------cagtt consensus/100% TTs..TAAT.ATT....ACAA....ACT.....TuTG..sCCTT.....TTGus...GuuGTTT.TT........sAusT consensus/90% TTs..TAAT.ATT....ACAA....ACT.....TuTG..sCCTT.....TTGus...GuuGTTT.TT........sAusT consensus/80% TTs..TAAT.ATT....ACAA....ACT.....TuTG..sCCTT.....TTGus...GuuGTTT.TT........sAusT consensus/70% TTs..TAAT.ATT....ACAA....ACT.....TuTG..sCCTT.....TTGus...GuuGTTT.TT........sAusT cov pid 28561 . . . 6 . . . . 28640 1 2019nCoV 100.0% 100.0% tt----------------gcatctgtttatgct------tggaacagg---aagagaat--cagcaactgtgttgc---t 2 SARS 95.5% 77.9% tc----------------ccttctgtctatgca------tgggagaga---aaaaaaatttc--taattgtgttgc---t 3 MERS 74.7% 47.2% tcgtctttcgaagcaaaaccttctg-----gctcagttgtggaacaggctgaag---------------gtgttgaatgt consensus/100% Ts................sCsTCTG.....GCs......TGGuAsAGu...AAu...............GTGTTGs...T consensus/90% Ts................sCsTCTG.....GCs......TGGuAsAGu...AAu...............GTGTTGs...T consensus/80% Ts................sCsTCTG.....GCs......TGGuAsAGu...AAu...............GTGTTGs...T consensus/70% Ts................sCsTCTG.....GCs......TGGuAsAGu...AAu...............GTGTTGs...T cov pid 28641 : . . . . 7 . . 28720 1 2019nCoV 100.0% 100.0% gatt----at----tctgtccta-tataattccgca---tcat--tttccacttttaagtgttatggagtgtctccta-- 2 SARS 95.5% 77.9% gatt----ac----tctgtgctc-tacaactcaaca---tttt--tttcaacctttaagtgctatggcgtttctgcca-- 3 MERS 74.7% 47.2% gatttttcacctcttctgt-ctggcacacctcctcaggtttataatttc-------aagcgtt-tgg--tttttaccaat consensus/100% GATT....As....TCTGT.CTs.sAsAssTCssCA...TssT..TTTC.......AAGsGsT.TGG..TsTsTsCsA.. consensus/90% GATT....As....TCTGT.CTs.sAsAssTCssCA...TssT..TTTC.......AAGsGsT.TGG..TsTsTsCsA.. consensus/80% GATT....As....TCTGT.CTs.sAsAssTCssCA...TssT..TTTC.......AAGsGsT.TGG..TsTsTsCsA.. consensus/70% GATT....As....TCTGT.CTs.sAsAssTCssCA...TssT..TTTC.......AAGsGsT.TGG..TsTsTsCsA.. cov pid 28721 . . : . . . . 8 28800 1 2019nCoV 100.0% 100.0% --ctaaattaaatgatctc-------tgctt-tactaatgtctatgca-gatt---catttgtaattagaggtgatgaag 2 SARS 95.5% 77.9% --ctaagttgaatgatctt-------tgctt-ctccaatgtctatgca-gatt---cttttgtagtcaagggagatgatg 3 MERS 74.7% 47.2% tgc--aatt--ataatcttaccaaattgctttcacttttttctgtgaatgattttac--ttgtagt-------------- consensus/100% ..C..AuTT..ATuATCTs.......TGCTT.ssCsssTsTCTuTGsA.GATT...C..TTGTAuT.............. consensus/90% ..C..AuTT..ATuATCTs.......TGCTT.ssCsssTsTCTuTGsA.GATT...C..TTGTAuT.............. consensus/80% ..C..AuTT..ATuATCTs.......TGCTT.ssCsssTsTCTuTGsA.GATT...C..TTGTAuT.............. consensus/70% ..C..AuTT..ATuATCTs.......TGCTT.ssCsssTsTCTuTGsA.GATT...C..TTGTAuT.............. cov pid 28801 . . . . : . . . 28880 1 2019nCoV 100.0% 100.0% tcagacaaatcgctccag-ggcaa---------actggaaag----att----gctgatt--------------ata--- 2 SARS 95.5% 77.9% taagacaaatagcgccag-gacaa---------actg----gtgttatt----gctgatt--------------ata--- 3 MERS 74.7% 47.2% -----caaatatctccagcagcaattgctagcaactg-------ttattcttcactgattttggattacttttcataccc consensus/100% .....CAAATssCsCCAG.uuCAA.........ACTG.........ATT....uCTGATT..............ATA... consensus/90% .....CAAATssCsCCAG.uuCAA.........ACTG.........ATT....uCTGATT..............ATA... consensus/80% .....CAAATssCsCCAG.uuCAA.........ACTG.........ATT....uCTGATT..............ATA... consensus/70% .....CAAATssCsCCAG.uuCAA.........ACTG.........ATT....uCTGATT..............ATA... cov pid 28881 . 9 . . . . : . 28960 1 2019nCoV 100.0% 100.0% ----attat-aaattaccagatgattttacaggctgcgttatagct----tgg---aattcta---acaatcttgattct 2 SARS 95.5% 77.9% ----attat-aaattgccagatgatttcatgggttgtgtccttgct----tgg---aatactaggaaca---ttgatgct 3 MERS 74.7% 47.2% acttagtatgaaat--cc----gatctca------gtgt--tagttctgctggtccaat----------------atccc consensus/100% ....AsTAT.AAAT..CC....GATsTsA......GsGT..TsGsT....TGG...AAT................ATsCs consensus/90% ....AsTAT.AAAT..CC....GATsTsA......GsGT..TsGsT....TGG...AAT................ATsCs consensus/80% ....AsTAT.AAAT..CC....GATsTsA......GsGT..TsGsT....TGG...AAT................ATsCs consensus/70% ....AsTAT.AAAT..CC....GATsTsA......GsGT..TsGsT....TGG...AAT................ATsCs cov pid 28961 . . . 0 . . . . 29040 1 2019nCoV 100.0% 100.0% a-----aggttggtggtaattataattacctg--tatagattgt---ttagg------aagtctaatctcaaaccttttg 2 SARS 95.5% 77.9% acttcaa-----ctggtaattataatta--taaatatag---gtatcttagacatggcaag------cttaggccctttg 3 MERS 74.7% 47.2% a-------gtt-----taattataa----------acag--------t-------------------------cctttt- consensus/100% A...............TAATTATAA..........AsAG........T.........................CCsTTT. consensus/90% A...............TAATTATAA..........AsAG........T.........................CCsTTT. consensus/80% A...............TAATTATAA..........AsAG........T.........................CCsTTT. consensus/70% A...............TAATTATAA..........AsAG........T.........................CCsTTT. cov pid 29041 : . . . . 1 . . 29120 1 2019nCoV 100.0% 100.0% agagagatatttcaactgaaatcta-----------tcaggcc--ggtagcacaccttgta----a--tggtgttgaagg 2 SARS 95.5% 77.9% agagagacat----------atctaatgtgcctttctc---ccctgatggcaaaccttgcaccccacct---------gc 3 MERS 74.7% 47.2% ----------------------ctaat--------------cc-------caca---tgt-------------ttga--- consensus/100% ......................CTA................CC.......CAsA...TGs.................... consensus/90% ......................CTA................CC.......CAsA...TGs.................... consensus/80% ......................CTA................CC.......CAsA...TGs.................... consensus/70% ......................CTA................CC.......CAsA...TGs.................... cov pid 29121 . . : . . . . 2 29200 1 2019nCoV 100.0% 100.0% tttta---attgttacttt--cctttacaatcat-atggtttc--caaccc--actaatggtgttggttaccaa-cca-- 2 SARS 95.5% 77.9% tctta---attgtta--ttggccatta-aatgattatggtttttaca--cc--actactggcattggctaccaa-cct-- 3 MERS 74.7% 47.2% ttttagcgactgtt-------cc-------tcat------------aa-ccttactacta-------ttactaagcctct consensus/100% TsTTA...AsTGTT.......CC.......TsAT............A..CC..ACTAsTu.......sTACsAA.CCs.. consensus/90% TsTTA...AsTGTT.......CC.......TsAT............A..CC..ACTAsTu.......sTACsAA.CCs.. consensus/80% TsTTA...AsTGTT.......CC.......TsAT............A..CC..ACTAsTu.......sTACsAA.CCs.. consensus/70% TsTTA...AsTGTT.......CC.......TsAT............A..CC..ACTAsTu.......sTACsAA.CCs.. cov pid 29201 . . . . : . . . 29280 1 2019nCoV 100.0% 100.0% ----tacag----------agtagtagtact------ttcttt-------------tgaa---cttc------tacatgc 2 SARS 95.5% 77.9% ----tacag----------agttgtagtact------ttcttt-------------tgaa---cttt------taaatgc 3 MERS 74.7% 47.2% taagtacagctatattaaca-----agtgctctcgtcttctttctgatgatcgtactgaagtacctcagttagtgaacgc consensus/100% ....TACAG..........A.....AGTuCT......TTCTTT.............TGAA...CsTs......TusAsGC consensus/90% ....TACAG..........A.....AGTuCT......TTCTTT.............TGAA...CsTs......TusAsGC consensus/80% ....TACAG..........A.....AGTuCT......TTCTTT.............TGAA...CsTs......TusAsGC consensus/70% ....TACAG..........A.....AGTuCT......TTCTTT.............TGAA...CsTs......TusAsGC cov pid 29281 . 3 . . . . : . 29360 1 2019nCoV 100.0% 100.0% ------------accagcaactgt-------ttgtggacctaaaaa--gtctacta---------------atttggtta 2 SARS 95.5% 77.9% ------------accggccacggt-------ttgtggacc--aaaattatccactg---------------accttatta 3 MERS 74.7% 47.2% taatcaatactcacc-----ctgtgtatccattgt---ccc-------atccactgtgtgggaagacggtga--ttatta consensus/100% ............ACC.....CsGT.......TTGT...CC........uTCsACTu...............A..TsuTTA consensus/90% ............ACC.....CsGT.......TTGT...CC........uTCsACTu...............A..TsuTTA consensus/80% ............ACC.....CsGT.......TTGT...CC........uTCsACTu...............A..TsuTTA consensus/70% ............ACC.....CsGT.......TTGT...CC........uTCsACTu...............A..TsuTTA cov pid 29361 . . . 4 . . . . 29440 1 2019nCoV 100.0% 100.0% ---aaaacaa----------------atg----------tgt-------------------------------caatt-- 2 SARS 95.5% 77.9% ---agaacca----------------gtg----------tgt-------------------------------caatt-- 3 MERS 74.7% 47.2% taggaaacaactatctccacttgaaggtggtggctggcttgttgctagtggctcaactgttgccatgactgagcaattac consensus/100% ...uuAACsA................uTG..........TGT...............................CAATT.. consensus/90% ...uuAACsA................uTG..........TGT...............................CAATT.. consensus/80% ...uuAACsA................uTG..........TGT...............................CAATT.. consensus/70% ...uuAACsA................uTG..........TGT...............................CAATT.. cov pid 29441 : . . . . 5 . . 29520 1 2019nCoV 100.0% 100.0% ---------------tca-acttcaat--ggtttaacaggcac---aggtgt----------t--------cttactgag 2 SARS 95.5% 77.9% ---------------tta-attttaat--ggactcactggtac---tggtgtgttaactcctt--------ctt------ 3 MERS 74.7% 47.2% agatgggctttggtattacagttcaatatggt---acagacaccaatagtgt---------ttgccccaagctt---gaa consensus/100% ...............TsA.AsTTsAAT..GGs...ACsGusAC...suGTGT..........T........CTT...... consensus/90% ...............TsA.AsTTsAAT..GGs...ACsGusAC...suGTGT..........T........CTT...... consensus/80% ...............TsA.AsTTsAAT..GGs...ACsGusAC...suGTGT..........T........CTT...... consensus/70% ...............TsA.AsTTsAAT..GGs...ACsGusAC...suGTGT..........T........CTT...... cov pid 29521 . . : . . . . 6 29600 1 2019nCoV 100.0% 100.0% tcta--------acaaaaag-tttctgcctttccaa-----caatt---tggcagagacattgctgacactactgatgct 2 SARS 95.5% 77.9% -------------caaagagatttcaaccatttcaa-----caatt---tggccgtgatgtttctgatttcactgattcc 3 MERS 74.7% 47.2% tttgctaatgacacaaaaa--tt---gcc-tctcaattaggcaattgcgtgg----aatattcc---ctcta-tggt--- consensus/100% .............CAAAuA..TT...uCC.TssCAA.....CAATT...TGG....uAsuTTsC...ssssA.TGuT... consensus/90% .............CAAAuA..TT...uCC.TssCAA.....CAATT...TGG....uAsuTTsC...ssssA.TGuT... consensus/80% .............CAAAuA..TT...uCC.TssCAA.....CAATT...TGG....uAsuTTsC...ssssA.TGuT... consensus/70% .............CAAAuA..TT...uCC.TssCAA.....CAATT...TGG....uAsuTTsC...ssssA.TGuT... cov pid 29601 . . . . : . . . 29680 1 2019nCoV 100.0% 100.0% gt------ccgtgat-----cc-acaga------cacttg-agattcttgacattacaccatgttcttt-----tggtg- 2 SARS 95.5% 77.9% gt------tcgagat-----ccta-aaa------catctg-aaatattagacatttcaccttgcgcttt-----tgggg- 3 MERS 74.7% 47.2% gtttcgggccgtggtgtttttc---agaattgcacagctgtaggtgttcgaca--gca----gcgctttgtttatgatgc consensus/100% GT......sCGsGuT.....sC...AuA......CAssTG.AuuTssTsGACA..sCA....GssCTTT.....TGusG. consensus/90% GT......sCGsGuT.....sC...AuA......CAssTG.AuuTssTsGACA..sCA....GssCTTT.....TGusG. consensus/80% GT......sCGsGuT.....sC...AuA......CAssTG.AuuTssTsGACA..sCA....GssCTTT.....TGusG. consensus/70% GT......sCGsGuT.....sC...AuA......CAssTG.AuuTssTsGACA..sCA....GssCTTT.....TGusG. cov pid 29681 . 7 . . . . : . 29760 1 2019nCoV 100.0% 100.0% gtgtcag------------tgttataacaccag--ga--acaaatact-------------------------tctaacc 2 SARS 95.5% 77.9% gtgtaag------------tgtaattacacctg--ga--acaaatgct-------------------------tc--atc 3 MERS 74.7% 47.2% gtaccagaatttagttggctattatt----ctgatgatggcaactactactgtttgcgtgcttgtgttagtgttc----c consensus/100% GTussAG............TuTsATs....CsG..GA..uCAAsTuCT.........................TC....C consensus/90% GTussAG............TuTsATs....CsG..GA..uCAAsTuCT.........................TC....C consensus/80% GTussAG............TuTsATs....CsG..GA..uCAAsTuCT.........................TC....C consensus/70% GTussAG............TuTsATs....CsG..GA..uCAAsTuCT.........................TC....C cov pid 29761 . . . 8 . . . . 29840 1 2019nCoV 100.0% 100.0% --aggttgctgt--tcttt-atcaggatgttaact------------------------------gcacagaagtccctg 2 SARS 95.5% 77.9% tgaagttgctgt--tctat-atcaagatgttaact------------------------------gcactga------tg 3 MERS 74.7% 47.2% t---gtttctgtcatctatgataaaga----aactaaaacccacgctactctatttggtagtgttgca----------tg consensus/100% ....GTTsCTGT..TCTsT.ATsAuGA....AACT..............................GCA..........TG consensus/90% ....GTTsCTGT..TCTsT.ATsAuGA....AACT..............................GCA..........TG consensus/80% ....GTTsCTGT..TCTsT.ATsAuGA....AACT..............................GCA..........TG consensus/70% ....GTTsCTGT..TCTsT.ATsAuGA....AACT..............................GCA..........TG cov pid 29841 : . . . . 9 . . 29920 1 2019nCoV 100.0% 100.0% t-----------tgcta------ttcatg---ca-----------------gatcaacttactcctactt----ggcgtg 2 SARS 95.5% 77.9% t-----------ttctacagcaattcatg---ca-----------------gatcaactcacaccagctt----ggcgca 3 MERS 74.7% 47.2% tgaacacatttcttctac-------catgtctcaatactcccgttctacgcgatcaa--------tgcttaaacggcgag consensus/100% T...........TsCTA........CATG...CA.................GATCAA........suCTT....GGCGsu consensus/90% T...........TsCTA........CATG...CA.................GATCAA........suCTT....GGCGsu consensus/80% T...........TsCTA........CATG...CA.................GATCAA........suCTT....GGCGsu consensus/70% T...........TsCTA........CATG...CA.................GATCAA........suCTT....GGCGsu cov pid 29921 . . : . . . . 0 30000 1 2019nCoV 100.0% 100.0% tttattctacaggttct------aatg---tttttcaaacacgtgcaggctgtttaataggggctgaacatgtcaacaac 2 SARS 95.5% 77.9% tatattctac------tggaaacaatg---tattccagactcaagcaggctgtcttataggagctgagcatgtcgacact 3 MERS 74.7% 47.2% ---attctaca-----t-------atggcccccttcagacacctgttggttgtgtcctagga-ct-----tgttaattcc consensus/100% ...ATTCTAC......T.......ATG...sssTsCAuACsCssGssGGsTGTsTssTAGGu.CT.....TGTsuAssss consensus/90% ...ATTCTAC......T.......ATG...sssTsCAuACsCssGssGGsTGTsTssTAGGu.CT.....TGTsuAssss consensus/80% ...ATTCTAC......T.......ATG...sssTsCAuACsCssGssGGsTGTsTssTAGGu.CT.....TGTsuAssss consensus/70% ...ATTCTAC......T.......ATG...sssTsCAuACsCssGssGGsTGTsTssTAGGu.CT.....TGTsuAssss cov pid 30001 . . . . : . . . 30080 1 2019nCoV 100.0% 100.0% tcatatg----------------agtgtgacatacccattggtgcaggta-----tatgcg---------------ctag 2 SARS 95.5% 77.9% tcttatg----------------agtgcgacattcctattggagctggca-----tttgtg---------------ctag 3 MERS 74.7% 47.2% tctt-tgttcgtagaggactgcaagt------tgcctcttggt-----caatctctctgtgctcttcctgacacacctag consensus/100% TCsT.TG................AGT......TsCCssTTGGs.....sA.....TsTGsG...............CTAG consensus/90% TCsT.TG................AGT......TsCCssTTGGs.....sA.....TsTGsG...............CTAG consensus/80% TCsT.TG................AGT......TsCCssTTGGs.....sA.....TsTGsG...............CTAG consensus/70% TCsT.TG................AGT......TsCCssTTGGs.....sA.....TsTGsG...............CTAG cov pid 30081 . 1 . . . . : . 30160 1 2019nCoV 100.0% 100.0% t--tatcagac----tcagactaattctcctcggcgggcacgtagtgtagc------------------------tagtc 2 SARS 95.5% 77.9% t--taccatacagtttc---tttatt-------------acgtagta---c------------------------tagcc 3 MERS 74.7% 47.2% tactctcacac------------------ct---------cgcagtgt-gcgctctgttccaggtgaaatgcgcttggc- consensus/100% T..TssCAsAC.............................CGsAGTu...C........................TuGs. consensus/90% T..TssCAsAC.............................CGsAGTu...C........................TuGs. consensus/80% T..TssCAsAC.............................CGsAGTu...C........................TuGs. consensus/70% T..TssCAsAC.............................CGsAGTu...C........................TuGs. cov pid 30161 . . . 2 . . . . 30240 1 2019nCoV 100.0% 100.0% a---atccatcattgcct------acactatgtcactt--ggtgcagaa-aattcagttgc--ttactctaa--taactc 2 SARS 95.5% 77.9% aaaaatctattgtggctt------atactatgtc--tttaggtgctgat-agttcaattgc--ttactctaa--taacac 3 MERS 74.7% 47.2% ----atccatt---gcttttaatcatcctat-tca-----ggt--tgatcaacttaatagtagttattttaaattaa--- consensus/100% ....ATCsATs...GCsT......AssCTAT.TC......GGT..sGAs.AusTsAuTsGs..TTAsTsTAA..TAA... consensus/90% ....ATCsATs...GCsT......AssCTAT.TC......GGT..sGAs.AusTsAuTsGs..TTAsTsTAA..TAA... consensus/80% ....ATCsATs...GCsT......AssCTAT.TC......GGT..sGAs.AusTsAuTsGs..TTAsTsTAA..TAA... consensus/70% ....ATCsATs...GCsT......AssCTAT.TC......GGT..sGAs.AusTsAuTsGs..TTAsTsTAA..TAA... cov pid 30241 : . . . . 3 . . 30320 1 2019nCoV 100.0% 100.0% tattgccatacccacaaattttactattagtgttaccacagaaattctaccagtgtctat---gaccaagaca--tcag- 2 SARS 95.5% 77.9% cattgctatacctactaacttttcaattagcattactacagaagtaatgcctgtttctat---ggctaaaacc--tccg- 3 MERS 74.7% 47.2% ----g-tatacccactaatttttcctttggtgtgact-caggagtac-----------attcagac---aaccattcaga consensus/100% ....G.sATACCsACsAAsTTTsCssTTuGsuTsACs.CAGuAuTss...........AT...GuC...uACs..TCsG. consensus/90% ....G.sATACCsACsAAsTTTsCssTTuGsuTsACs.CAGuAuTss...........AT...GuC...uACs..TCsG. consensus/80% ....G.sATACCsACsAAsTTTsCssTTuGsuTsACs.CAGuAuTss...........AT...GuC...uACs..TCsG. consensus/70% ....G.sATACCsACsAAsTTTsCssTTuGsuTsACs.CAGuAuTss...........AT...GuC...uACs..TCsG. cov pid 30321 . . : . . . . 4 30400 1 2019nCoV 100.0% 100.0% ----ta-----gattgtaca-at-gtacatttgt---ggtgattcaactgaa-tgc-agc-aatcttttgttgc------ 2 SARS 95.5% 77.9% ----ta-----gattgta-atat-gtacatctgc---ggagattctactgaa-tgt--gctaat------ttgcttctcc 3 MERS 74.7% 47.2% aagttactgttgattgta-a-acagtacgtttgcaatggt--ttcca--gaagtgtgagc-aat----tactgc---gcg consensus/100% ....TA.....GATTGTA.A.As.GTACuTsTGs...GGs..TTCsA..GAA.TGs..GC.AAT......sTGC...... consensus/90% ....TA.....GATTGTA.A.As.GTACuTsTGs...GGs..TTCsA..GAA.TGs..GC.AAT......sTGC...... consensus/80% ....TA.....GATTGTA.A.As.GTACuTsTGs...GGs..TTCsA..GAA.TGs..GC.AAT......sTGC...... consensus/70% ....TA.....GATTGTA.A.As.GTACuTsTGs...GGs..TTCsA..GAA.TGs..GC.AAT......sTGC...... cov pid 30401 . . . . : . . . 30480 1 2019nCoV 100.0% 100.0% aatatgg-cagtttttg---tacacaattaaacc------------gtgc---tttaact----gga--atagctgt--- 2 SARS 95.5% 77.9% aatatgg-tagcttttg---cacacaactaaatc------------gtgc-------actctcaggt--attgctgc--- 3 MERS 74.7% 47.2% agtatggccag-ttttgttcca---aaataaaccaggctctccatggtgccaattt-acgc-caggatgatt-ctgtacg consensus/100% AuTATGG.sAG.TTTTG...sA...AAsTAAAsC............GTGC.......ACs....GGs..ATs.CTGs... consensus/90% AuTATGG.sAG.TTTTG...sA...AAsTAAAsC............GTGC.......ACs....GGs..ATs.CTGs... consensus/80% AuTATGG.sAG.TTTTG...sA...AAsTAAAsC............GTGC.......ACs....GGs..ATs.CTGs... consensus/70% AuTATGG.sAG.TTTTG...sA...AAsTAAAsC............GTGC.......ACs....GGs..ATs.CTGs... cov pid 30481 . 5 . . . . : . 30560 1 2019nCoV 100.0% 100.0% ---------tgaacaaga---caaaaacacccaagaagtttttgcacaag---tcaaacaaattt------acaaaacac 2 SARS 95.5% 77.9% ---------tgaacaggatcgc---aacacacgtgaagtgttcgctcaag---tcaaacaaatgt------acaaaac-c 3 MERS 74.7% 47.2% taatttgtttg--cgag--------------cgtgaa----------aagctctcaatca--tctcctatcata-----c consensus/100% .........TG..CuuG..............CusGAA..........AAG...TCAAsCA..TsT......AsA.....C consensus/90% .........TG..CuuG..............CusGAA..........AAG...TCAAsCA..TsT......AsA.....C consensus/80% .........TG..CuuG..............CusGAA..........AAG...TCAAsCA..TsT......AsA.....C consensus/70% .........TG..CuuG..............CusGAA..........AAG...TCAAsCA..TsT......AsA.....C cov pid 30561 . . . 6 . . . . 30640 1 2019nCoV 100.0% 100.0% caccaatt---aaagattttggtggt---tttaattt-----ttc-acaa---------atat-taccagatccatc-aa 2 SARS 95.5% 77.9% c--caactttgaaatattttggtggt---tttaattt-----ttc-acaa---------atat-tacctgaccc-tctaa 3 MERS 74.7% 47.2% c------------aggttttggaggtgactttaatttgacacttctagaacctgtttctatatctactgg---------- consensus/100% C............AsuTTTTGGsGGT...TTTAATTT.....TTC.AsAA.........ATAT.TACssG.......... consensus/90% C............AsuTTTTGGsGGT...TTTAATTT.....TTC.AsAA.........ATAT.TACssG.......... consensus/80% C............AsuTTTTGGsGGT...TTTAATTT.....TTC.AsAA.........ATAT.TACssG.......... consensus/70% C............AsuTTTTGGsGGT...TTTAATTT.....TTC.AsAA.........ATAT.TACssG.......... cov pid 30641 : . . . . 7 . . 30720 1 2019nCoV 100.0% 100.0% aaccaagcaagaggtcat-------------ttattgaagatctacttttcaacaaagtgacactt--gcagatgctggc 2 SARS 95.5% 77.9% agccaactaagaggtctt-------------ttattgaggacttgctctttaataaggtgacactc--gctgatgctggc 3 MERS 74.7% 47.2% ---ca--------gtcgtagtgcacgtagtgctattgaggatttgctatttgacaaagt--cactatagctgatcctggt consensus/100% ...CA........GTCsT.............sTATTGAuGAssTuCTsTTsuAsAAuGT..CACTs..GCsGATsCTGGs consensus/90% ...CA........GTCsT.............sTATTGAuGAssTuCTsTTsuAsAAuGT..CACTs..GCsGATsCTGGs consensus/80% ...CA........GTCsT.............sTATTGAuGAssTuCTsTTsuAsAAuGT..CACTs..GCsGATsCTGGs consensus/70% ...CA........GTCsT.............sTATTGAuGAssTuCTsTTsuAsAAuGT..CACTs..GCsGATsCTGGs cov pid 30721 . . : . . . . 8 30800 1 2019nCoV 100.0% 100.0% ttcatcaaacaa---tatggtgattgcct------tggt--gatattgctgctagagacctcatttgtgcacaaaagttt 2 SARS 95.5% 77.9% ttcatgaagcaa---tatggcgaatgcct------aggt--gatattaatgctagagatctcatttgtgcgcagaagttc 3 MERS 74.7% 47.2% tatat---gcaaggttacgatgattgcatgcagcaaggtccagcatca--gctcgtgatcttatttgtgc--------tc consensus/100% TssAT...uCAA...TAsGusGAsTGCsT......sGGT..uusATsu..GCTsGsGAsCTsATTTGTGC........Ts consensus/90% TssAT...uCAA...TAsGusGAsTGCsT......sGGT..uusATsu..GCTsGsGAsCTsATTTGTGC........Ts consensus/80% TssAT...uCAA...TAsGusGAsTGCsT......sGGT..uusATsu..GCTsGsGAsCTsATTTGTGC........Ts consensus/70% TssAT...uCAA...TAsGusGAsTGCsT......sGGT..uusATsu..GCTsGsGAsCTsATTTGTGC........Ts cov pid 30801 . . . . : . . . 30880 1 2019nCoV 100.0% 100.0% aac--------ggccttact--gttttgccacctttgctcacagatg---aaatg--attgct--caatacacttc---- 2 SARS 95.5% 77.9% aat--------ggacttaca--gtgttgccacctctgctcactgatg---atatg--attgctgcc--tacactgc---- 3 MERS 74.7% 47.2% aatatgtggctgg--ttacaaagtattacctcct---cttatggatgttaatatggaa--gccg-c-gtatacttcatct consensus/100% AAs........GG..TTACs..GTsTTuCCsCCT...CTsAssGATG...AsATG..A..GCs..C..TAsACTsC.... consensus/90% AAs........GG..TTACs..GTsTTuCCsCCT...CTsAssGATG...AsATG..A..GCs..C..TAsACTsC.... consensus/80% AAs........GG..TTACs..GTsTTuCCsCCT...CTsAssGATG...AsATG..A..GCs..C..TAsACTsC.... consensus/70% AAs........GG..TTACs..GTsTTuCCsCCT...CTsAssGATG...AsATG..A..GCs..C..TAsACTsC.... cov pid 30881 . 9 . . . . : . 30960 1 2019nCoV 100.0% 100.0% -tgcact-gttagcgggtacaatcac------ttctggttggacctttggtgcaggt------------gctgcattaca 2 SARS 95.5% 77.9% -tgctctagttagtgg-tactgccac------tgctggatggacatttggtgctggc------------gctgctcttca 3 MERS 74.7% 47.2% ttgc-----ttggcag-------catagcaggtgttggctggac------tgctggcttatcctcctttgctgct----- consensus/100% .TGC.....TTuGsuG.......CAs......TssTGGsTGGAC......TGCsGGs............GCTGCs..... consensus/90% .TGC.....TTuGsuG.......CAs......TssTGGsTGGAC......TGCsGGs............GCTGCs..... consensus/80% .TGC.....TTuGsuG.......CAs......TssTGGsTGGAC......TGCsGGs............GCTGCs..... consensus/70% .TGC.....TTuGsuG.......CAs......TssTGGsTGGAC......TGCsGGs............GCTGCs..... cov pid 30961 . . . 0 . . . . 31040 1 2019nCoV 100.0% 100.0% aataccatttgc------tatgcaaatggctt--ataggtttaatggtattggagttacacagaatgttctct-atgaga 2 SARS 95.5% 77.9% aataccttttgc------tatgcaaatggcat--ataggttcaatggcattggagttacccaaaatgttctct-atgaga 3 MERS 74.7% 47.2% -attccatttgcacagagtat--------cttttataggttaaacggtgttggcattactcaacaggttctttca-gaga consensus/100% .ATsCCsTTTGC......TAT........CsT..ATAGGTTsAAsGGsuTTGGsuTTACsCAusAsGTTCTsT.A.GAGA consensus/90% .ATsCCsTTTGC......TAT........CsT..ATAGGTTsAAsGGsuTTGGsuTTACsCAusAsGTTCTsT.A.GAGA consensus/80% .ATsCCsTTTGC......TAT........CsT..ATAGGTTsAAsGGsuTTGGsuTTACsCAusAsGTTCTsT.A.GAGA consensus/70% .ATsCCsTTTGC......TAT........CsT..ATAGGTTsAAsGGsuTTGGsuTTACsCAusAsGTTCTsT.A.GAGA cov pid 31041 : . . . . 1 . . 31120 1 2019nCoV 100.0% 100.0% accaaaaattgattgccaaccaatttaa-tagt--------gctattggcaaaattcaagactcactttcttccacagc- 2 SARS 95.5% 77.9% accaaaaacaaatcgccaaccaatttaa-caag--------gcgattagtcaaattcaagaatcactt------acaac- 3 MERS 74.7% 47.2% accaaaagcttattgccaataagtttaatcaggctctgggagctat--gcaaa---caggcttcact-------acaact consensus/100% ACCAAAAusssATsGCCAAssAuTTTAA.sAus........GCsAT..GssAA...CAuGssTCACT.......ACAuC. consensus/90% ACCAAAAusssATsGCCAAssAuTTTAA.sAus........GCsAT..GssAA...CAuGssTCACT.......ACAuC. consensus/80% ACCAAAAusssATsGCCAAssAuTTTAA.sAus........GCsAT..GssAA...CAuGssTCACT.......ACAuC. consensus/70% ACCAAAAusssATsGCCAAssAuTTTAA.sAus........GCsAT..GssAA...CAuGssTCACT.......ACAuC. cov pid 31121 . . : . . . . 2 31200 1 2019nCoV 100.0% 100.0% aag------tgcacttggaaaac-----------ttcaagatgtggtcaaccaaaatgcacaagctttaaacacgcttgt 2 SARS 95.5% 77.9% aacatcaactgcattgggcaagc-----------tgcaagacgttgttaaccagaatgctcaagcattaaacacacttgt 3 MERS 74.7% 47.2% aa-------tg--------aagcttttcagaaggttcaggatgctgtgaacaacaatgcacaggctcta-------tc-- consensus/100% AA.......TG........AAuC...........TsCAuGAsGssGTsAACsAsAATGCsCAuGCssTA.......Ts.. consensus/90% AA.......TG........AAuC...........TsCAuGAsGssGTsAACsAsAATGCsCAuGCssTA.......Ts.. consensus/80% AA.......TG........AAuC...........TsCAuGAsGssGTsAACsAsAATGCsCAuGCssTA.......Ts.. consensus/70% AA.......TG........AAuC...........TsCAuGAsGssGTsAACsAsAATGCsCAuGCssTA.......Ts.. cov pid 31201 . . . . : . . . 31280 1 2019nCoV 100.0% 100.0% taaacaacttagc----------tccaat---tttggtgcaatttcaagtg----ttttaaatgatatcctttcacgtct 2 SARS 95.5% 77.9% taaacaacttagc----------tctaat---tttggtgcaatttcaagtg----tgctaaatgatatcctttcgcgact 3 MERS 74.7% 47.2% ----caaattagctagcgagctatctaatacttttggtgctatttc---cgcctctattgga-gacatcatacaacgtct consensus/100% ....CAAsTTAGC..........TCsAAT...TTTGGTGCsATTTC...sG....TssTuuA.GAsATCsTsssuCGsCT consensus/90% ....CAAsTTAGC..........TCsAAT...TTTGGTGCsATTTC...sG....TssTuuA.GAsATCsTsssuCGsCT consensus/80% ....CAAsTTAGC..........TCsAAT...TTTGGTGCsATTTC...sG....TssTuuA.GAsATCsTsssuCGsCT consensus/70% ....CAAsTTAGC..........TCsAAT...TTTGGTGCsATTTC...sG....TssTuuA.GAsATCsTsssuCGsCT cov pid 31281 . 3 . . . . : . 31360 1 2019nCoV 100.0% 100.0% tgac-------aa-agttgaggctgaagtgcaaattgatagg----ttgatcacaggcag---------acttcaaa-gt 2 SARS 95.5% 77.9% tgat-------aa-agtcgaggcggaggtacaaattgacagg----ttaattacaggcag---------acttcaaa-gc 3 MERS 74.7% 47.2% tgatgttctcgaacag--gacgcc------caaatagacagacttattaat----ggccgtttgacaacact--aaatgc consensus/100% TGAs.......AA.AG..GAsGCs......CAAATsGAsAGu....TTuAT....GGCsG.........ACT..AAA.Gs consensus/90% TGAs.......AA.AG..GAsGCs......CAAATsGAsAGu....TTuAT....GGCsG.........ACT..AAA.Gs consensus/80% TGAs.......AA.AG..GAsGCs......CAAATsGAsAGu....TTuAT....GGCsG.........ACT..AAA.Gs consensus/70% TGAs.......AA.AG..GAsGCs......CAAATsGAsAGu....TTuAT....GGCsG.........ACT..AAA.Gs cov pid 31361 . . . 4 . . . . 31440 1 2019nCoV 100.0% 100.0% ttgcagacatatgtgactcaacaatt-----------aattagagctgcagaaatcagagcttctgct-aatcttgctgc 2 SARS 95.5% 77.9% cttcaaacctatgtaacacaacaact-----------aatcagggctgctgaaatcagggcttctgct-aatcttgctgc 3 MERS 74.7% 47.2% ttt--------tgttgcacagcagcttgttcgttccgaatca--gctgc-----tc----tttccgctcaa--ttg--gc consensus/100% sTs........TGTsuCsCAuCAusT...........AATsA..GCTGC.....TC....sTTCsGCT.AA..TTG..GC consensus/90% sTs........TGTsuCsCAuCAusT...........AATsA..GCTGC.....TC....sTTCsGCT.AA..TTG..GC consensus/80% sTs........TGTsuCsCAuCAusT...........AATsA..GCTGC.....TC....sTTCsGCT.AA..TTG..GC consensus/70% sTs........TGTsuCsCAuCAusT...........AATsA..GCTGC.....TC....sTTCsGCT.AA..TTG..GC cov pid 31441 : . . . . 5 . . 31520 1 2019nCoV 100.0% 100.0% tactaaaat---gtca--gagtgtgtacttgg-acaatcaaaaagagtt---gatttttgtgg--aaagggc-----tat 2 SARS 95.5% 77.9% tactaaaat---gtct--gagtgtgttcttgg-acaatcaaaaagagtt---gacttttgtgg--aaagggc-----tac 3 MERS 74.7% 47.2% ta--aagataaagtcaatgagtgtgt-caaggcacaatccaa--gcgttctgga-ttttgcggtcaa--ggcacacata- consensus/100% TA..AAuAT...GTCs..GAGTGTGT.CssGG.ACAATCsAA..GsGTT...GA.TTTTGsGG..AA..GGC.....TA. consensus/90% TA..AAuAT...GTCs..GAGTGTGT.CssGG.ACAATCsAA..GsGTT...GA.TTTTGsGG..AA..GGC.....TA. consensus/80% TA..AAuAT...GTCs..GAGTGTGT.CssGG.ACAATCsAA..GsGTT...GA.TTTTGsGG..AA..GGC.....TA. consensus/70% TA..AAuAT...GTCs..GAGTGTGT.CssGG.ACAATCsAA..GsGTT...GA.TTTTGsGG..AA..GGC.....TA. cov pid 31521 . . : . . . . 6 31600 1 2019nCoV 100.0% 100.0% catctta-tgtccttccctcagtcagcacctcatggtgtagt---------------------cttcttgcatgtgactt 2 SARS 95.5% 77.9% cacctta-tgtccttcccacaagcagccccgcatggtgttgt---------------------cttcctacatgtcacgt 3 MERS 74.7% 47.2% -----tagtgtcctt---------------------tgttgtaaatgcccctaatggcctttacttcatgcatgt----- consensus/100% .....TA.TGTCCTT.....................TGTsGT.....................CTTCsTuCATGT..... consensus/90% .....TA.TGTCCTT.....................TGTsGT.....................CTTCsTuCATGT..... consensus/80% .....TA.TGTCCTT.....................TGTsGT.....................CTTCsTuCATGT..... consensus/70% .....TA.TGTCCTT.....................TGTsGT.....................CTTCsTuCATGT..... cov pid 31601 . . . . : . . . 31680 1 2019nCoV 100.0% 100.0% atg-----t--ccctgcacaa-------gaa-------------aagaacttcacaa--ctgct---cctgccatttgt- 2 SARS 95.5% 77.9% atgtgccat--cc-----cag-------gag-------------aggaacttcacca--cagcg---ccagcaatttgt- 3 MERS 74.7% 47.2% -tg-gttattacccta-gcaaccacattgaggttgtttctgcttatggtctttgcgatgcagctaaccctactaattgta consensus/100% .TG.....T..CC.....CAu.......GAu.............AsGusCTTsuCsA..CsGCs...CCsuCsAsTTGT. consensus/90% .TG.....T..CC.....CAu.......GAu.............AsGusCTTsuCsA..CsGCs...CCsuCsAsTTGT. consensus/80% .TG.....T..CC.....CAu.......GAu.............AsGusCTTsuCsA..CsGCs...CCsuCsAsTTGT. consensus/70% .TG.....T..CC.....CAu.......GAu.............AsGusCTTsuCsA..CsGCs...CCsuCsAsTTGT. cov pid 31681 . 7 . . . . : . 31760 1 2019nCoV 100.0% 100.0% -----catg---atgga---------aaagc-----acactttcctcgtgaagg--tgtctttg-t--ttcaaatgg-ca 2 SARS 95.5% 77.9% -----catg---aaggc---------aaagc-----atacttccctcgtgaagg--tgtttttg-tgttt--aatgg-ca 3 MERS 74.7% 47.2% tagcccctgttaatggctactttattaaaactaataacact----------aggattg---ttgatg-----agtggtca consensus/100% .....CsTG...AsGGs.........AAAuC.....AsACT..........AGG..TG...TTG.T......AuTGG.CA consensus/90% .....CsTG...AsGGs.........AAAuC.....AsACT..........AGG..TG...TTG.T......AuTGG.CA consensus/80% .....CsTG...AsGGs.........AAAuC.....AsACT..........AGG..TG...TTG.T......AuTGG.CA consensus/70% .....CsTG...AsGGs.........AAAuC.....AsACT..........AGG..TG...TTG.T......AuTGG.CA cov pid 31761 . . . 8 . . . . 31840 1 2019nCoV 100.0% 100.0% cacactggtttgtaacacaaaggaa-----tttttatgaaccac---aaatcattactacagac------aacacatttg 2 SARS 95.5% 77.9% cttcttggtttattacacagaggaacttcttttct-----ccac---aaataattactacagac------aatacatttg 3 MERS 74.7% 47.2% tatactggctcgt---------------c-cttctatg---cacctgagcccattac------ctcccttaatac----- consensus/100% sssssTGGsTsuT.................sTTsT......CAC...AusssATTAC......C......AAsAC..... consensus/90% sssssTGGsTsuT.................sTTsT......CAC...AusssATTAC......C......AAsAC..... consensus/80% sssssTGGsTsuT.................sTTsT......CAC...AusssATTAC......C......AAsAC..... consensus/70% sssssTGGsTsuT.................sTTsT......CAC...AusssATTAC......C......AAsAC..... cov pid 31841 : . . . . 9 . . 31920 1 2019nCoV 100.0% 100.0% tgtctggtaactgtgatgttgta--atagg---aattgtcaacaacacagtt-ta-tga---------tccttt-----g 2 SARS 95.5% 77.9% tctcaggaaattgtgatgtcgtt--attgg---catcattaacaacacagtt-ta-tga---------tcctct-----g 3 MERS 74.7% 47.2% -------taa--gt-atgttgcaccacaggtgacat----accaaaacatttctactaacctccctcctcctcttctcgg consensus/100% .......sAA..GT.ATGTsGss..AssGG...sAT....AsCAAsACAsTT.TA.TuA.........TCCTsT.....G consensus/90% .......sAA..GT.ATGTsGss..AssGG...sAT....AsCAAsACAsTT.TA.TuA.........TCCTsT.....G consensus/80% .......sAA..GT.ATGTsGss..AssGG...sAT....AsCAAsACAsTT.TA.TuA.........TCCTsT.....G consensus/70% .......sAA..GT.ATGTsGss..AssGG...sAT....AsCAAsACAsTT.TA.TuA.........TCCTsT.....G cov pid 31921 . . : . . . . 0 32000 1 2019nCoV 100.0% 100.0% caa-----cctgaattagactcattcaaggaggagttagataaatattttaagaatcatacat---caccagatgt---t 2 SARS 95.5% 77.9% caa-----cctgagcttgactcattcaaagaagagctggacaagtacttcaaaaatcatacat---caccagatgt---t 3 MERS 74.7% 47.2% caattccaccgggatt-gac---ttccaagatgagttggatgagtttttcaaaaat-----gttagcaccag-tatacct consensus/100% CAA.....CCsGuusT.GAC...TTCsAuGAsGAGsTuGAsuAuTssTTsAAuAAT.....uT...CACCAG.TuT...T consensus/90% CAA.....CCsGuusT.GAC...TTCsAuGAsGAGsTuGAsuAuTssTTsAAuAAT.....uT...CACCAG.TuT...T consensus/80% CAA.....CCsGuusT.GAC...TTCsAuGAsGAGsTuGAsuAuTssTTsAAuAAT.....uT...CACCAG.TuT...T consensus/70% CAA.....CCsGuusT.GAC...TTCsAuGAsGAGsTuGAsuAuTssTTsAAuAAT.....uT...CACCAG.TuT...T cov pid 32001 . . . . : . . . 32080 1 2019nCoV 100.0% 100.0% gatttagg-----tgacatctctggcattaatgcttcagttgtaaacatt------------caaaaagaaattgaccgc 2 SARS 95.5% 77.9% gatcttgg-----cgacatttcaggcattaacgcttctgtcgtcaacatt------------caaaaagaaattgaccgc 3 MERS 74.7% 47.2% aattttggttccctaaca---cag--attaatact----------acattactcgatcttacctacgagatgttg-tctc consensus/100% uATsTsGG.....suACA...CsG..ATTAAsuCT..........ACATT............CsAsuAGAsuTTG.sCsC consensus/90% uATsTsGG.....suACA...CsG..ATTAAsuCT..........ACATT............CsAsuAGAsuTTG.sCsC consensus/80% uATsTsGG.....suACA...CsG..ATTAAsuCT..........ACATT............CsAsuAGAsuTTG.sCsC consensus/70% uATsTsGG.....suACA...CsG..ATTAAsuCT..........ACATT............CsAsuAGAsuTTG.sCsC cov pid 32081 . 1 . . . . : . 32160 1 2019nCoV 100.0% 100.0% ctcaatgaggttgccaagaatttaaatgaatctctcatcgatctccaagaacttggaaagtatgagcagta--tataa-- 2 SARS 95.5% 77.9% ctcaatgaggtcgctaaaaatttaaatgaatcactcattgaccttcaagaattgggaaaatatgagcaata--tatta-- 3 MERS 74.7% 47.2% ttcaacaa-gttgttaaagcccttaatgagtcttacatagaccttaaagagcttggcaattat-------acttattaca consensus/100% sTCAAsuA.GTsGssAAuusssTsAATGAuTCsssCATsGAsCTssAAGAusTsGGsAAsTAT.......A..TATsA.. consensus/90% sTCAAsuA.GTsGssAAuusssTsAATGAuTCsssCATsGAsCTssAAGAusTsGGsAAsTAT.......A..TATsA.. consensus/80% sTCAAsuA.GTsGssAAuusssTsAATGAuTCsssCATsGAsCTssAAGAusTsGGsAAsTAT.......A..TATsA.. consensus/70% sTCAAsuA.GTsGssAAuusssTsAATGAuTCsssCATsGAsCTssAAGAusTsGGsAAsTAT.......A..TATsA.. cov pid 32161 . . . 2 . . . . 32240 1 2019nCoV 100.0% 100.0% ---aatggccatggtacatttggctaggttttatagctggcttgattgccatag---taatg-gtgacaattatgctt-- 2 SARS 95.5% 77.9% ---aatggccttggtatgtttggctcggcttcattgctggactaattgccatcg---tcatg-gttacaatcttgctt-- 3 MERS 74.7% 47.2% acaaatggccgtggtacatttggcttggtttcattgctgggcttgttgccttagctct-atgcgt----------cttct consensus/100% ...AATGGCCsTGGTAsuTTTGGCTsGGsTTsATsGCTGGssTsuTTGCCsTsG...T.ATG.GT..........CTT.. consensus/90% ...AATGGCCsTGGTAsuTTTGGCTsGGsTTsATsGCTGGssTsuTTGCCsTsG...T.ATG.GT..........CTT.. consensus/80% ...AATGGCCsTGGTAsuTTTGGCTsGGsTTsATsGCTGGssTsuTTGCCsTsG...T.ATG.GT..........CTT.. consensus/70% ...AATGGCCsTGGTAsuTTTGGCTsGGsTTsATsGCTGGssTsuTTGCCsTsG...T.ATG.GT..........CTT.. cov pid 32241 : . . . . 3 . . 32320 1 2019nCoV 100.0% 100.0% --------tgctgtatgaccagttgctgta---gttgt---------ctcaagggctgt-tgt--tc-ttgtggatcctg 2 SARS 95.5% 77.9% --------tgttgcatgactagttgttgca---gttgc---------ctcaaggg-tgcatgc--tc-ttgtggttcttg 3 MERS 74.7% 47.2% tcatactgtgctgc---actggttgtggcacaaactgtatgggaaaacttaag-------tgtaatcgttgt-------- consensus/100% ........TGsTGs...ACsuGTTGssGsA...usTGs.........CTsAAG.......TGs..TC.TTGT........ consensus/90% ........TGsTGs...ACsuGTTGssGsA...usTGs.........CTsAAG.......TGs..TC.TTGT........ consensus/80% ........TGsTGs...ACsuGTTGssGsA...usTGs.........CTsAAG.......TGs..TC.TTGT........ consensus/70% ........TGsTGs...ACsuGTTGssGsA...usTGs.........CTsAAG.......TGs..TC.TTGT........ cov pid 32321 . . : . . . . 4 32400 1 2019nCoV 100.0% 100.0% ctgcaaatttgat------gaaga---cgactctgagccagtgctca-aaggagtcaaattacattacacataaacgaac 2 SARS 95.5% 77.9% ctgcaagtttgat------gagga---tgactctgagccagttctca-agggtgtcaaattacattacacataaacgaac 3 MERS 74.7% 47.2% -tg------tgatagatacgaggaatacgacctcgagccg-----cataaggt-tcatgtt-cacta---attaacgaac consensus/100% .TG......TGAT......GAuGA...sGACsssGAGCCu.....CA.AuGGs.TCAsuTT.CAsTA...ATsAACGAAC consensus/90% .TG......TGAT......GAuGA...sGACsssGAGCCu.....CA.AuGGs.TCAsuTT.CAsTA...ATsAACGAAC consensus/80% .TG......TGAT......GAuGA...sGACsssGAGCCu.....CA.AuGGs.TCAsuTT.CAsTA...ATsAACGAAC consensus/70% .TG......TGAT......GAuGA...sGACsssGAGCCu.....CA.AuGGs.TCAsuTT.CAsTA...ATsAACGAAC cov pid 32401 . . . . : . . . 32480 1 2019nCoV 100.0% 100.0% t-t--atg----------gat-----------ttgtttatgagaatcttcac---------------------------- 2 SARS 95.5% 77.9% t-t--atg----------gat-----------ttgtttatgagattttttactct--------------------tagat 3 MERS 74.7% 47.2% tattaatgagagttcaaagaccacccactctcttgttagtg----ttttcactctctcttttggtcactgcatcct---- consensus/100% T.T..ATG..........GAs...........TTGTTsuTG....TsTTsAC............................ consensus/90% T.T..ATG..........GAs...........TTGTTsuTG....TsTTsAC............................ consensus/80% T.T..ATG..........GAs...........TTGTTsuTG....TsTTsAC............................ consensus/70% T.T..ATG..........GAs...........TTGTTsuTG....TsTTsAC............................ cov pid 32481 . 5 . . . . : . 32560 1 2019nCoV 100.0% 100.0% -aattggaac-------tgtaactttgaagc----aaggtgaaatca--aggatgctactccttcagatttt---gtt-c 2 SARS 95.5% 77.9% caatt---ac-------tgc-ac-----agccagtaa----aaattg--acaatgcttctcctgcaagtact---gtt-c 3 MERS 74.7% 47.2% caa----aacctctctatgt-ac-ctg-agc------------attgtcagaat--------------tattctggttgc consensus/100% .AA.....AC.......TGs.AC.....AGC............ATsu..AsuAT..............TssT...GTT.C consensus/90% .AA.....AC.......TGs.AC.....AGC............ATsu..AsuAT..............TssT...GTT.C consensus/80% .AA.....AC.......TGs.AC.....AGC............ATsu..AsuAT..............TssT...GTT.C consensus/70% .AA.....AC.......TGs.AC.....AGC............ATsu..AsuAT..............TssT...GTT.C cov pid 32561 . . . 6 . . . . 32640 1 2019nCoV 100.0% 100.0% gcgct----------------actgc---aac-gataccgat---------acaagcctcactccctttcggatggctta 2 SARS 95.5% 77.9% atgct----------------acagc---aac-gataccgct---------acaagcctcactccctttcggatggcttg 3 MERS 74.7% 47.2% atgcttagggcttgtattaaaactgcccaagctgatacagctggtctttatacaaa---------ttttcgaat------ consensus/100% usGCT................ACsGC...AuC.GATACsGsT.........ACAAu.........sTTTCGuAT...... consensus/90% usGCT................ACsGC...AuC.GATACsGsT.........ACAAu.........sTTTCGuAT...... consensus/80% usGCT................ACsGC...AuC.GATACsGsT.........ACAAu.........sTTTCGuAT...... consensus/70% usGCT................ACsGC...AuC.GATACsGsT.........ACAAu.........sTTTCGuAT...... cov pid 32641 : . . . . 7 . . 32720 1 2019nCoV 100.0% 100.0% ttgttggcgttgcacttcttgctgtttttcagagcgcttccaaaatcataaccctcaaaaagagatggcaactagcactc 2 SARS 95.5% 77.9% ttattggcgttgcatttcttgctgtttttcagagcgctaccaaaataattgcgctcaataaaagatggcagctagccctt 3 MERS 74.7% 47.2% ----tgacgtcccat------ctg----------------cagaat----------------------caactggtact- consensus/100% ....TGuCGTssCAs......CTG................CAuAAT......................CAuCTuGssCT. consensus/90% ....TGuCGTssCAs......CTG................CAuAAT......................CAuCTuGssCT. consensus/80% ....TGuCGTssCAs......CTG................CAuAAT......................CAuCTuGssCT. consensus/70% ....TGuCGTssCAs......CTG................CAuAAT......................CAuCTuGssCT. cov pid 32721 . . : . . . . 8 32800 1 2019nCoV 100.0% 100.0% tccaagggtgttcactttgt-------ttg---caactt--gct-------gt-----------tgttgtt--tgtaaca 2 SARS 95.5% 77.9% tataagggcttccagttcat-------ttg---caattt--act-------gc-----------tgctatt--tgttacc 3 MERS 74.7% 47.2% --caa------tcagtttctgtcgatcttgagtcaacttcaactcatgatggtcctaccgaacatgttactagtgtga-- consensus/100% ..sAA......sCAsTTssT.......TTG...CAAsTT..uCT.......Gs...........TGsTusT..TGTsA.. consensus/90% ..sAA......sCAsTTssT.......TTG...CAAsTT..uCT.......Gs...........TGsTusT..TGTsA.. consensus/80% ..sAA......sCAsTTssT.......TTG...CAAsTT..uCT.......Gs...........TGsTusT..TGTsA.. consensus/70% ..sAA......sCAsTTssT.......TTG...CAAsTT..uCT.......Gs...........TGsTusT..TGTsA.. cov pid 32801 . . . . : . . . 32880 1 2019nCoV 100.0% 100.0% gtttactcacacctttt----gctcgttgctgctggcctt-------gaagccccttttctctatctttatgctttagtc 2 SARS 95.5% 77.9% atctattcacatctttt----gcttgtcgctgcaggtatg-------gaggcgcaatttttgtacctctatgccttgata 3 MERS 74.7% 47.2% ----------atctttttgacgttggttact-cag---ttaattaacgaa---------------ctctatg----gat- consensus/100% ..........AsCTTTT....GsTsGTsuCT.CsG...Ts.......GAu...............CTsTATG....uuT. consensus/90% ..........AsCTTTT....GsTsGTsuCT.CsG...Ts.......GAu...............CTsTATG....uuT. consensus/80% ..........AsCTTTT....GsTsGTsuCT.CsG...Ts.......GAu...............CTsTATG....uuT. consensus/70% ..........AsCTTTT....GsTsGTsuCT.CsG...Ts.......GAu...............CTsTATG....uuT. cov pid 32881 . 9 . . . . : . 32960 1 2019nCoV 100.0% 100.0% tac---ttcttgc--agagtataaactttgta---agaataataatgag-gctttggct-------------ttgctgga 2 SARS 95.5% 77.9% tat---tttctac--aatgcatcaac---gcatgtagaattattatgag-atgttggct-------------ttgttgga 3 MERS 74.7% 47.2% tacgtgtctctgctta----atcaaatttg---gcagaa---------gtaccttaactcaccgtatactacttgtt--- consensus/100% TAs...TsssTuC..A....ATsAAs...G.....AGAA.........G.ussTTuuCT.............TTGsT... consensus/90% TAs...TsssTuC..A....ATsAAs...G.....AGAA.........G.ussTTuuCT.............TTGsT... consensus/80% TAs...TsssTuC..A....ATsAAs...G.....AGAA.........G.ussTTuuCT.............TTGsT... consensus/70% TAs...TsssTuC..A....ATsAAs...G.....AGAA.........G.ussTTuuCT.............TTGsT... cov pid 32961 . . . 0 . . . . 33040 1 2019nCoV 100.0% 100.0% aatgccgttccaaaaaccca-----------------tta-------ctttat----------------ga--tgccaac 2 SARS 95.5% 77.9% agtgcaaatccaagaaccca-----------------tta-------ctttat----------------ga--tgccaac 3 MERS 74.7% 47.2% --tgtacatccctaaacccacagctaagtatacacctttagttggcacttcattgcaccctgtgctgtggaactgtcagc consensus/100% ..TGssssTCCssuAACCCA.................TTA.......CTTsAT................GA..TGsCAuC consensus/90% ..TGssssTCCssuAACCCA.................TTA.......CTTsAT................GA..TGsCAuC consensus/80% ..TGssssTCCssuAACCCA.................TTA.......CTTsAT................GA..TGsCAuC consensus/70% ..TGssssTCCssuAACCCA.................TTA.......CTTsAT................GA..TGsCAuC cov pid 33041 : . . . . 1 . . 33120 1 2019nCoV 100.0% 100.0% tattttctttgctggc-atac---taattgttacga--ctattgt--ataccttacaatag---tgt-------aacttc 2 SARS 95.5% 77.9% tactttgtttgctggc-acacacataa---ctatga--ctactgt--ataccatataacag---tgtcacagata----- 3 MERS 74.7% 47.2% ta--tcctttgctggttatac------------tgaatctgctgttaattc--tacaaaagctttg--gc---------- consensus/100% TA..TssTTTGCTGGs.AsAC............sGA..CTusTGT..ATsC..TAsAAsAG...TG.............. consensus/90% TA..TssTTTGCTGGs.AsAC............sGA..CTusTGT..ATsC..TAsAAsAG...TG.............. consensus/80% TA..TssTTTGCTGGs.AsAC............sGA..CTusTGT..ATsC..TAsAAsAG...TG.............. consensus/70% TA..TssTTTGCTGGs.AsAC............sGA..CTusTGT..ATsC..TAsAAsAG...TG.............. cov pid 33121 . . : . . . . 2 33200 1 2019nCoV 100.0% 100.0% ttcaa------------------------ttg-tcattacttcagg-------------tgatggca----caacaagtc 2 SARS 95.5% 77.9% --caa------------------------ttg-tcgttactgaagg-------------tgacggcat-ttcaaca---c 3 MERS 74.7% 47.2% --caaacaggacgcagctcagcgaatcgcttggttgctacataaggatggaggaatccctgatgg-atgttc-------c consensus/100% ..CAA........................TTG.TsusTACsssAGG.............TGAsGG.A....C.......C consensus/90% ..CAA........................TTG.TsusTACsssAGG.............TGAsGG.A....C.......C consensus/80% ..CAA........................TTG.TsusTACsssAGG.............TGAsGG.A....C.......C consensus/70% ..CAA........................TTG.TsusTACsssAGG.............TGAsGG.A....C.......C cov pid 33201 . . . . : . . . 33280 1 2019nCoV 100.0% 100.0% ctatttctgaac------atgact-----ac-cagattggtggttatac--------tgaaaaatggg-aatctggag-- 2 SARS 95.5% 77.9% caa------aactcaaagaagact-----ac-caaattggtggttattc--------tgagga-taggcactcaggtg-- 3 MERS 74.7% 47.2% c----tct--ac----------ctccggcactcaagtt------tattcgcgcaaagcgagga--aga------ggagcc consensus/100% C.........AC..........CT.....AC.CAuuTT......TATsC........sGAuuA..uGu......GGsG.. consensus/90% C.........AC..........CT.....AC.CAuuTT......TATsC........sGAuuA..uGu......GGsG.. consensus/80% C.........AC..........CT.....AC.CAuuTT......TATsC........sGAuuA..uGu......GGsG.. consensus/70% C.........AC..........CT.....AC.CAuuTT......TATsC........sGAuuA..uGu......GGsG.. cov pid 33281 . 3 . . . . : . 33360 1 2019nCoV 100.0% 100.0% ----------taaaagactgtgttgtat-tacacagtta--------------cttc------------ac-----ttca 2 SARS 95.5% 77.9% ----------ttaaagactatgtcgt-tgtacatggcta--------------tttc------------accgaagtt-- 3 MERS 74.7% 47.2% attctccaactaagaaactgcgc------tac---gttaagcgtagattttctcttctgcgccatgaagacc----tt-a consensus/100% ..........TsAuAuACTusGs......TAC...GsTA..............sTTC............AC.....TT.. consensus/90% ..........TsAuAuACTusGs......TAC...GsTA..............sTTC............AC.....TT.. consensus/80% ..........TsAuAuACTusGs......TAC...GsTA..............sTTC............AC.....TT.. consensus/70% ..........TsAuAuACTusGs......TAC...GsTA..............sTTC............AC.....TT.. cov pid 33361 . . . 4 . . . . 33440 1 2019nCoV 100.0% 100.0% gactatta----ccagc-tg----tactcaactcaattgagtacagacact------ggtgttgaacatgttaccttctt 2 SARS 95.5% 77.9% ---tacta----ccagcttgagtctacacaa----att-actacagacact------ggtattgaaaatgctacattctt 3 MERS 74.7% 47.2% g--tgttattgtccaac-----------caac--------------acactatgtcagg----------gttacatt-tt consensus/100% ...TusTA....CCAuC...........CAA...............ACACT......GG..........GsTACsTT.TT consensus/90% ...TusTA....CCAuC...........CAA...............ACACT......GG..........GsTACsTT.TT consensus/80% ...TusTA....CCAuC...........CAA...............ACACT......GG..........GsTACsTT.TT consensus/70% ...TusTA....CCAuC...........CAA...............ACACT......GG..........GsTACsTT.TT cov pid 33441 : . . . . 5 . . 33520 1 2019nCoV 100.0% 100.0% catctacaataaaattgttgatgagcctgaagaac---atgtccaaattcacacaatcgacg----gttcatccggagtt 2 SARS 95.5% 77.9% catctttaacaagcttgttaaagaccc------accgaatgtgcaaatacacacaatcgacg----gctcttcaggagtt 3 MERS 74.7% 47.2% ca--------------------gacccc----aac---atgtg---gt-------atctacgttcgggtcatca----tt consensus/100% CA....................GAsCC......AC...ATGTs...uT.......ATCsACG....GsTCsTCs....TT consensus/90% CA....................GAsCC......AC...ATGTs...uT.......ATCsACG....GsTCsTCs....TT consensus/80% CA....................GAsCC......AC...ATGTs...uT.......ATCsACG....GsTCsTCs....TT consensus/70% CA....................GAsCC......AC...ATGTs...uT.......ATCsACG....GsTCsTCs....TT cov pid 33521 . . : . . . . 6 33600 1 2019nCoV 100.0% 100.0% gtta-atccag----taa-tgg----aaccaatttatgatgaaccgacgacgactactagcgtgcctttgtaagcacaag 2 SARS 95.5% 77.9% gcta-atccag----caa-tgg----atccaatttatgatgagccgacgacgactactagcgtgcctttgtaagcacaa- 3 MERS 74.7% 47.2% --tacactcagttcacaattggcttaaacc---ttatggcg-gccaac--------ctg-------ttt----------- consensus/100% ..TA.AssCAG....sAA.TGG....AsCC...TTATGusG.uCCuAC........CTu.......TTT........... consensus/90% ..TA.AssCAG....sAA.TGG....AsCC...TTATGusG.uCCuAC........CTu.......TTT........... consensus/80% ..TA.AssCAG....sAA.TGG....AsCC...TTATGusG.uCCuAC........CTu.......TTT........... consensus/70% ..TA.AssCAG....sAA.TGG....AsCC...TTATGusG.uCCuAC........CTu.......TTT........... cov pid 33601 . . . . : . . . 33680 1 2019nCoV 100.0% 100.0% ctga---tgagtacgaacttatgtactcattcgtttcg---------------gaagagacaggtacgttaatagttaat 2 SARS 95.5% 77.9% --gaaagtgagtacgaacttatgtactcattcgtttcg---------------gaagaaacaggtacgttaatagttaat 3 MERS 74.7% 47.2% c------tgagtac---catat-tactc--tagctttgctaaatctcactgatgaaga----------tt--tagctag- consensus/100% .......TGAGTAC...CsTAT.TACTC..TsGsTTsG...............GAAGA..........TT..TAGsTAu. consensus/90% .......TGAGTAC...CsTAT.TACTC..TsGsTTsG...............GAAGA..........TT..TAGsTAu. consensus/80% .......TGAGTAC...CsTAT.TACTC..TsGsTTsG...............GAAGA..........TT..TAGsTAu. consensus/70% .......TGAGTAC...CsTAT.TACTC..TsGsTTsG...............GAAGA..........TT..TAGsTAu. cov pid 33681 . 7 . . . . : . 33760 1 2019nCoV 100.0% 100.0% agcgtacttctttttc-----ttgctttcgtggtattcttgc----tagttacact--agc--cat-------ccttact 2 SARS 95.5% 77.9% agcgtacttctttttc-----ttgctttcgtggtattcttgc----tagtcacact--agc--cat-------ccttact 3 MERS 74.7% 47.2% ag---a----tttttcacccattgcgctc------tttttgcgcaat-gtcagatttgagctacatgagttcgccttgct consensus/100% AG...A....TTTTTC.....TTGCssTC......TTsTTGC....T.GTsAsAsT..AGC..CAT.......CCTTuCT consensus/90% AG...A....TTTTTC.....TTGCssTC......TTsTTGC....T.GTsAsAsT..AGC..CAT.......CCTTuCT consensus/80% AG...A....TTTTTC.....TTGCssTC......TTsTTGC....T.GTsAsAsT..AGC..CAT.......CCTTuCT consensus/70% AG...A....TTTTTC.....TTGCssTC......TTsTTGC....T.GTsAsAsT..AGC..CAT.......CCTTuCT cov pid 33761 . . . 8 . . . . 33840 1 2019nCoV 100.0% 100.0% gcgc----ttcgattgt-----gtgcgt---------actgctgc-aatat-------tgttaa-----cgt---gagtc 2 SARS 95.5% 77.9% gcgc----ttcgattgt-----gtgcgt---------actgctgc-aatat-------tgttaa-----cgt---gagtt 3 MERS 74.7% 47.2% gcgcaaaactc--ttgttcttaatgcatcagagatctactg-tgctaacatacatagat-ttaagcctgtgtatagagtt consensus/100% GCGC....sTC..TTGT.....uTGCuT.........ACTG.TGC.AAsAT.......T.TTAA.....sGT...GAGTs consensus/90% GCGC....sTC..TTGT.....uTGCuT.........ACTG.TGC.AAsAT.......T.TTAA.....sGT...GAGTs consensus/80% GCGC....sTC..TTGT.....uTGCuT.........ACTG.TGC.AAsAT.......T.TTAA.....sGT...GAGTs consensus/70% GCGC....sTC..TTGT.....uTGCuT.........ACTG.TGC.AAsAT.......T.TTAA.....sGT...GAGTs cov pid 33841 : . . . . 9 . . 33920 1 2019nCoV 100.0% 100.0% ttgtaaaacc-----ttctttttacg------tttactctcgtgttaaaaatctgaattc---ttct---agag---ttc 2 SARS 95.5% 77.9% tagtaaaaccaacggt-----ttacg------tctactcgcgtgttaaaaatctgaactc---ttctgaaggag---ttc 3 MERS 74.7% 47.2% ------aac--------------acggcaatccctac-----tattaaggat-tggcttctcgttc----agggattttc consensus/100% ......AAC..............ACG......ssTAC.....TuTTAAuuAT.TGussTC...TTC....uGuG...TTC consensus/90% ......AAC..............ACG......ssTAC.....TuTTAAuuAT.TGussTC...TTC....uGuG...TTC consensus/80% ......AAC..............ACG......ssTAC.....TuTTAAuuAT.TGussTC...TTC....uGuG...TTC consensus/70% ......AAC..............ACG......ssTAC.....TuTTAAuuAT.TGussTC...TTC....uGuG...TTC cov pid 33921 . . : . . . . 0 34000 1 2019nCoV 100.0% 100.0% ctgatcttc-------tgg----------------------tctaa-----acgaactaaat-------------atta- 2 SARS 95.5% 77.9% ctgatcttc-------tgg----------------------tctaa-----acgaactaact-------------attat 3 MERS 74.7% 47.2% c----ctttaccatagtggcctccctttacatatgtcaatctctaaattgcatgcactggatgatgttactcgcaatta- consensus/100% C....CTTs.......TGG......................TCTAA.....AsGsACTuusT.............ATTA. consensus/90% C....CTTs.......TGG......................TCTAA.....AsGsACTuusT.............ATTA. consensus/80% C....CTTs.......TGG......................TCTAA.....AsGsACTuusT.............ATTA. consensus/70% C....CTTs.......TGG......................TCTAA.....AsGsACTuusT.............ATTA. cov pid 34001 . . . . : . . . 34080 1 2019nCoV 100.0% 100.0% tattagttttt------c--tg-tttggaactt-----taa-------tt--ttagccat--ggc---agat------tc 2 SARS 95.5% 77.9% tatta----tt------c--tg-tttggaactt-----taaca-----ttgctta-tcat--ggc---aga--------- 3 MERS 74.7% 47.2% catca----ttacaatgccatgctttagaacttaccctcaacaaatgtttg-ttactcctttggccgtagatgttgtctc consensus/100% sATsA....TT......C..TG.TTTuGAACTT.....sAA.......TT..TTA.sCsT..GGC...AGA......... consensus/90% sATsA....TT......C..TG.TTTuGAACTT.....sAA.......TT..TTA.sCsT..GGC...AGA......... consensus/80% sATsA....TT......C..TG.TTTuGAACTT.....sAA.......TT..TTA.sCsT..GGC...AGA......... consensus/70% sATsA....TT......C..TG.TTTuGAACTT.....sAA.......TT..TTA.sCsT..GGC...AGA......... cov pid 34081 . 1 . . . . : . 34160 1 2019nCoV 100.0% 100.0% ca-acggt-------------------ac--------------tat-------tac--cgttgaagagcttaaaaagctc 2 SARS 95.5% 77.9% ca-acggt-------------------ac--------------tat-------tac--cgttgaggagcttaaacaactc 3 MERS 74.7% 47.2% catacggtcttccaatcagggtaataaacaaattgttcattcttatcccattttacatcatccaggattttaa------- consensus/100% CA.ACGGT...................AC..............TAT.......TAC..CuTssAuGAssTTAA....... consensus/90% CA.ACGGT...................AC..............TAT.......TAC..CuTssAuGAssTTAA....... consensus/80% CA.ACGGT...................AC..............TAT.......TAC..CuTssAuGAssTTAA....... consensus/70% CA.ACGGT...................AC..............TAT.......TAC..CuTssAuGAssTTAA....... cov pid 34161 . . . 2 . . . . 34240 1 2019nCoV 100.0% 100.0% cttgaacaatgg---------------------aacc--------tagt---aataggtttc--ct--attcc-ttacat 2 SARS 95.5% 77.9% ctggaacaatgg---------------------aacc--------tagt---aataggtttc--ct--attcc-tagcct 3 MERS 74.7% 47.2% c--gaactatggctttctcggcgtctttatttaaacccgtccagctagtccca----gtttctcctgcatttcatcgcat consensus/100% C..GAACsATGG.....................AACC........TAGT...A....GTTTC..CT..ATTsC.TsuCsT consensus/90% C..GAACsATGG.....................AACC........TAGT...A....GTTTC..CT..ATTsC.TsuCsT consensus/80% C..GAACsATGG.....................AACC........TAGT...A....GTTTC..CT..ATTsC.TsuCsT consensus/70% C..GAACsATGG.....................AACC........TAGT...A....GTTTC..CT..ATTsC.TsuCsT cov pid 34241 : . . . . 3 . . 34320 1 2019nCoV 100.0% 100.0% ggatt-tgtcttctacaatttg--cctatgccaacaggaataggtttttgtatataattaagttaattttcct-ctggct 2 SARS 95.5% 77.9% ggattatgt-tactacaatttg--cctattctaatcggaacaggtttttgtacataataaagcttgttttcct-ctggct 3 MERS 74.7% 47.2% tga----gt---ctac----tgactctatt-------------gttttcacataca------------ttcctgctagc- consensus/100% sGA....GT...CTAC....TG..sCTATs.............GTTTTsusAsAsA............TTCCT.CTuGC. consensus/90% sGA....GT...CTAC....TG..sCTATs.............GTTTTsusAsAsA............TTCCT.CTuGC. consensus/80% sGA....GT...CTAC....TG..sCTATs.............GTTTTsusAsAsA............TTCCT.CTuGC. consensus/70% sGA....GT...CTAC....TG..sCTATs.............GTTTTsusAsAsA............TTCCT.CTuGC. cov pid 34321 . . : . . . . 4 34400 1 2019nCoV 100.0% 100.0% gttatggcca-gtaac---tttagct-----tgttttgtgc---------------ttgctgct--------------gt 2 SARS 95.5% 77.9% cttgtggcca-gtaac-actt--gct-----tgttttgtgc---------------ttgctgct--------------gt 3 MERS 74.7% 47.2% -----ggctatgtagctgctttagctgtcaatgt---gtgtctcattcccctattattactgctacgtcaagatacttgt consensus/100% .....GGCsA.GTAuC...TT..GCT.....TGT...GTGs...............TTuCTGCT..............GT consensus/90% .....GGCsA.GTAuC...TT..GCT.....TGT...GTGs...............TTuCTGCT..............GT consensus/80% .....GGCsA.GTAuC...TT..GCT.....TGT...GTGs...............TTuCTGCT..............GT consensus/70% .....GGCsA.GTAuC...TT..GCT.....TGT...GTGs...............TTuCTGCT..............GT cov pid 34401 . . . . : . . . 34480 1 2019nCoV 100.0% 100.0% t----------ta-cagaataaattgg---------------------atcaccggtggaatt------gctatcg---- 2 SARS 95.5% 77.9% c----------ta-cagaattaattgg---------------------gtgactggcgggatt------gcgattg---- 3 MERS 74.7% 47.2% cgtcgcagcattatcagaacta--tggttctctatttccttgttctgtataact-------ttttattagccattgtact consensus/100% s..........TA.CAGAAssA..TGG.....................uTsACs.......TT......GCsATsG.... consensus/90% s..........TA.CAGAAssA..TGG.....................uTsACs.......TT......GCsATsG.... consensus/80% s..........TA.CAGAAssA..TGG.....................uTsACs.......TT......GCsATsG.... consensus/70% s..........TA.CAGAAssA..TGG.....................uTsACs.......TT......GCsATsG.... cov pid 34481 . 5 . . . . : . 34560 1 2019nCoV 100.0% 100.0% ---caatggcttgt--cttgt---------ag--gcttgatgtggc----tcagcta-cttcat---------------- 2 SARS 95.5% 77.9% ---caatggcttgt--attgt---------ag--gcttgatgtggc----ttagcta-cttcgt---------------- 3 MERS 74.7% 47.2% agtcaatgg--tgtacattatccaactggaagttgcctgat--agccttcttagttatcctcataatactttggtttgta consensus/100% ...CAATGG..TGT..sTTuT.........AG..GCsTGAT..uGC....TsAGsTA.CsTCuT................ consensus/90% ...CAATGG..TGT..sTTuT.........AG..GCsTGAT..uGC....TsAGsTA.CsTCuT................ consensus/80% ...CAATGG..TGT..sTTuT.........AG..GCsTGAT..uGC....TsAGsTA.CsTCuT................ consensus/70% ...CAATGG..TGT..sTTuT.........AG..GCsTGAT..uGC....TsAGsTA.CsTCuT................ cov pid 34561 . . . 6 . . . . 34640 1 2019nCoV 100.0% 100.0% ----------------------tgct----tctt-----tcagactgtttgcgcgtac--gcgttc-------------- 2 SARS 95.5% 77.9% ----------------------tgct----tcct-----tcaggctgtttgctcgtac--ccgctc-------------- 3 MERS 74.7% 47.2% gatagaattcgtttctgtctcatgctgaattcctacattcca--ctgtttg-----acatgcgttcccactttattcgtg consensus/100% ......................TGCT....TCsT.....sCA..CTGTTTG.....AC..sCGsTC.............. consensus/90% ......................TGCT....TCsT.....sCA..CTGTTTG.....AC..sCGsTC.............. consensus/80% ......................TGCT....TCsT.....sCA..CTGTTTG.....AC..sCGsTC.............. consensus/70% ......................TGCT....TCsT.....sCA..CTGTTTG.....AC..sCGsTC.............. cov pid 34641 : . . . . 7 . . 34720 1 2019nCoV 100.0% 100.0% -----------------catg---tggtc------attca-atccagaaactaacatt------------cttc--tcaa 2 SARS 95.5% 77.9% -----------------aatg---tggtc------attca-acccagaaacaaacatt------------cttc--tcaa 3 MERS 74.7% 47.2% ttagtacagtttcttctcatggtatggtccctgtaatacacacc---aaac---cattatttattagaaacttcgatcag consensus/100% .................sATG...TGGTC......ATsCA.AsC...AAAC...CATT............CTTC..TCAu consensus/90% .................sATG...TGGTC......ATsCA.AsC...AAAC...CATT............CTTC..TCAu consensus/80% .................sATG...TGGTC......ATsCA.AsC...AAAC...CATT............CTTC..TCAu consensus/70% .................sATG...TGGTC......ATsCA.AsC...AAAC...CATT............CTTC..TCAu cov pid 34721 . . : . . . . 8 34800 1 2019nCoV 100.0% 100.0% cg-tgc-----cactccatg------------gcactattctgaccagaccgcttctagaaagtgaactcgtaatcggag 2 SARS 95.5% 77.9% tg-tgc-----ctctccggg------------ggacaattgtgaccagaccgctcatggaaagtgaacttgtcattggtg 3 MERS 74.7% 47.2% cgttgcagctgttctc---gttgtttttatttgcactctt---------ccacttatatagagtgcacttat-att--ag consensus/100% sG.TGC.....ssCTC...G............GsACssTT.........CCuCTssTusAuAGTGsACTsuT.ATs..sG consensus/90% sG.TGC.....ssCTC...G............GsACssTT.........CCuCTssTusAuAGTGsACTsuT.ATs..sG consensus/80% sG.TGC.....ssCTC...G............GsACssTT.........CCuCTssTusAuAGTGsACTsuT.ATs..sG consensus/70% sG.TGC.....ssCTC...G............GsACssTT.........CCuCTssTusAuAGTGsACTsuT.ATs..sG cov pid 34801 . . . . : . . . 34880 1 2019nCoV 100.0% 100.0% ctgt--------gatccttcgtggacatctt-cgtattgctggacaccatctaggacg---ctgtgacatcaaggac--c 2 SARS 95.5% 77.9% ctgt--------gatcattcgtggtca-cttgcgaatggccggacactccctagggcg---ctgtgacattaaggac--c 3 MERS 74.7% 47.2% ccgttttagtaagat---------------------tagc----------cta----gtttctgtaac-t----gacttc consensus/100% CsGT........GAT.....................TsGC..........CTA....G...CTGTuAC.T....GAC..C consensus/90% CsGT........GAT.....................TsGC..........CTA....G...CTGTuAC.T....GAC..C consensus/80% CsGT........GAT.....................TsGC..........CTA....G...CTGTuAC.T....GAC..C consensus/70% CsGT........GAT.....................TsGC..........CTA....G...CTGTuAC.T....GAC..C cov pid 34881 . 9 . . . . : . 34960 1 2019nCoV 100.0% 100.0% tgcctaaa--gaaat-----cactgtt---g---ctacatcacgaacgc-------tttcttattaca-aattgg----g 2 SARS 95.5% 77.9% tgccaaaa--gagat-----cactgtg---g---ctacatcacgaacgc-------tttcttattaca-aattag----g 3 MERS 74.7% 47.2% tccttaaacggcaatgtttccactgttttcgtgcctgca--acg--cgcgattcagttcctcttcacataatc-gccccg consensus/100% TsCssAAA..GsuAT.....CACTGTs...G...CTuCA..ACG..CGC.......TTsCTssTsACA.AATs.G....G consensus/90% TsCssAAA..GsuAT.....CACTGTs...G...CTuCA..ACG..CGC.......TTsCTssTsACA.AATs.G....G consensus/80% TsCssAAA..GsuAT.....CACTGTs...G...CTuCA..ACG..CGC.......TTsCTssTsACA.AATs.G....G consensus/70% TsCssAAA..GsuAT.....CACTGTs...G...CTuCA..ACG..CGC.......TTsCTssTsACA.AATs.G....G cov pid 34961 . . . 0 . . . . 35040 1 2019nCoV 100.0% 100.0% agcttcgc-------------agc--------------------gtgtag---caggtgactca--ggt-----tttgct 2 SARS 95.5% 77.9% agcgtcgc-------------agc--------------------gtgtaggcac---tgattca--ggt-----tttgct 3 MERS 74.7% 47.2% agc-tcgcttatcgtttaagcagctctgcgctactatgggtcccgtgtagaggc---taatccattagtctctctttg-- consensus/100% AGC.TCGC.............AGC....................GTGTAG...C...TuAssCA..uGT.....TTTG.. consensus/90% AGC.TCGC.............AGC....................GTGTAG...C...TuAssCA..uGT.....TTTG.. consensus/80% AGC.TCGC.............AGC....................GTGTAG...C...TuAssCA..uGT.....TTTG.. consensus/70% AGC.TCGC.............AGC....................GTGTAG...C...TuAssCA..uGT.....TTTG.. cov pid 35041 : . . . . 1 . . 35120 1 2019nCoV 100.0% 100.0% g-catacagtcgctacaggattggc-----aactataaattaaacacagaccatt---ccagtagcagtgacaata---t 2 SARS 95.5% 77.9% g-catacaaccgctaccgtattgga-----aactataaattaaatacagaccacg---ccggtagcaacgacaata---t 3 MERS 74.7% 47.2% gacata---------------tggaaaacgaactatg--tt--------accctttgtcca--ag-aacg--aatagggt consensus/100% G.CATA...............TGGs.....AACTATu..TT........ACCsss...CCu..AG.AusG..AATA...T consensus/90% G.CATA...............TGGs.....AACTATu..TT........ACCsss...CCu..AG.AusG..AATA...T consensus/80% G.CATA...............TGGs.....AACTATu..TT........ACCsss...CCu..AG.AusG..AATA...T consensus/70% G.CATA...............TGGs.....AACTATu..TT........ACCsss...CCu..AG.AusG..AATA...T cov pid 35121 . . : . . . . 2 35200 1 2019nCoV 100.0% 100.0% tg-----------cttt---gcttgtac---agtaagtg--acaaca-----gatgtttcatctcgt-tgactttc---a 2 SARS 95.5% 77.9% tg-----------cttt---gctagtac---agtaagtg--acaaca-----gatgtttcatcttgt-tgacttcc---a 3 MERS 74.7% 47.2% tgttcatagtaaactttttcatttttaccgtagtatgtgctataacactcttggtgt--------gtatggctttcctta consensus/100% TG...........CTTT...usTssTAC...AGTAsGTG..AsAACA.....GuTGT........GT.TGuCTTsC...A consensus/90% TG...........CTTT...usTssTAC...AGTAsGTG..AsAACA.....GuTGT........GT.TGuCTTsC...A consensus/80% TG...........CTTT...usTssTAC...AGTAsGTG..AsAACA.....GuTGT........GT.TGuCTTsC...A consensus/70% TG...........CTTT...usTssTAC...AGTAsGTG..AsAACA.....GuTGT........GT.TGuCTTsC...A cov pid 35201 . . . . : . . . 35280 1 2019nCoV 100.0% 100.0% -ggttactatagcagagatatt-actaattat----------tatga-ggactt----------ttaaagtttc------ 2 SARS 95.5% 77.9% -ggttacaatagcagagatattgatt-atcat----------tatga-ggactt----------tcaggattgc------ 3 MERS 74.7% 47.2% cggctac--tag---------------attatgtgtgcaatgtatgacaggcttcaataccctgttag---ttcagcccg consensus/100% .GGsTAC..TAG...............ATsAT..........TATGA.uGuCTT..........TsAu...TsC...... consensus/90% .GGsTAC..TAG...............ATsAT..........TATGA.uGuCTT..........TsAu...TsC...... consensus/80% .GGsTAC..TAG...............ATsAT..........TATGA.uGuCTT..........TsAu...TsC...... consensus/70% .GGsTAC..TAG...............ATsAT..........TATGA.uGuCTT..........TsAu...TsC...... cov pid 35281 . 3 . . . . : . 35360 1 2019nCoV 100.0% 100.0% catttggaat-cttga--ttacatcata----------aacctca-ta-attaaa-aatttatctaag-----------t 2 SARS 95.5% 77.9% tatttggaat-cttgacgttata--ata----------agt-tcaata-gtgagacaat-tatttaag-----------c 3 MERS 74.7% 47.2% catt----atacttg----tata--atactggacgttcag--tc--tatgtaa---aat---tccaggatagtaaacccc consensus/100% sATT....AT.CTTG....TAsA..ATA..........Au..TC..TA.uTsA...AAT...TssAuG...........s consensus/90% sATT....AT.CTTG....TAsA..ATA..........Au..TC..TA.uTsA...AAT...TssAuG...........s consensus/80% sATT....AT.CTTG....TAsA..ATA..........Au..TC..TA.uTsA...AAT...TssAuG...........s consensus/70% sATT....AT.CTTG....TAsA..ATA..........Au..TC..TA.uTsA...AAT...TssAuG...........s cov pid 35361 . . . 4 . . . . 35440 1 2019nCoV 100.0% 100.0% cacta--actgagaataaatattctcaattagatgaagagcaaccaatggagatt-gatta-------aacgaac----- 2 SARS 95.5% 77.9% ctcta--actaagaagaattattcggagttagatgatgaagaacctatggag-ttagattatccataaaacgaac----- 3 MERS 74.7% 47.2% ctctaccacc-----------------------tgacgag-------tgg-g-tt----------t--aacgaactcctt consensus/100% CsCTA..ACs.......................TGAsGAu.......TGG.G.TT.............AACGAAC..... consensus/90% CsCTA..ACs.......................TGAsGAu.......TGG.G.TT.............AACGAAC..... consensus/80% CsCTA..ACs.......................TGAsGAu.......TGG.G.TT.............AACGAAC..... consensus/70% CsCTA..ACs.......................TGAsGAu.......TGG.G.TT.............AACGAAC..... cov pid 35441 : . . . . 5 . . 35520 1 2019nCoV 100.0% 100.0% -------------atga------------------aaattattcttttcttggcact------ga---ta---acactcg 2 SARS 95.5% 77.9% -------------atga------------------aaattattctcttcctgacatt------gattgtatttacat--- 3 MERS 74.7% 47.2% cataatgtctaatatgacgcaactcactgaggcgcagattatt--------gccattattaaagactgga---ac----- consensus/100% .............ATGA..................AuATTATT........GsCAsT......GA...sA...AC..... consensus/90% .............ATGA..................AuATTATT........GsCAsT......GA...sA...AC..... consensus/80% .............ATGA..................AuATTATT........GsCAsT......GA...sA...AC..... consensus/70% .............ATGA..................AuATTATT........GsCAsT......GA...sA...AC..... cov pid 35521 . . : . . . . 6 35600 1 2019nCoV 100.0% 100.0% ctacttgt---------gagcttt------atcactaccaagagtgtgttagaggtacaacagtacttttaaaagaacct 2 SARS 95.5% 77.9% ---cttgc---------gagctat------atcactatcaggagtgtgttagaggtacgactgtactactaaaagaacct 3 MERS 74.7% 47.2% ---tttgcatggtccctgatctttctcttaattactatc---------------gtactacagta--------------- consensus/100% ...sTTGs.........GAsCTsT......ATsACTAsC...............GTACsACsGTA............... consensus/90% ...sTTGs.........GAsCTsT......ATsACTAsC...............GTACsACsGTA............... consensus/80% ...sTTGs.........GAsCTsT......ATsACTAsC...............GTACsACsGTA............... consensus/70% ...sTTGs.........GAsCTsT......ATsACTAsC...............GTACsACsGTA............... cov pid 35601 . . . . : . . . 35680 1 2019nCoV 100.0% 100.0% tgctcttctggaacatacgagggcaattcaccatttcatcctctagctgataacaaatttgcactgact-tg-cttta-- 2 SARS 95.5% 77.9% tgcccatcaggaacatacgagggcaattcaccatttcaccctcttgctgacaataaatttgcactaact-tg-cacta-- 3 MERS 74.7% 47.2% --------tgg---atac------------ccat----ccc--------gtagta----tg-actgtctatgtctttaaa consensus/100% ........sGG...ATAC............CCAT....sCC........usAusA....TG.ACTusCT.TG.CssTA.. consensus/90% ........sGG...ATAC............CCAT....sCC........usAusA....TG.ACTusCT.TG.CssTA.. consensus/80% ........sGG...ATAC............CCAT....sCC........usAusA....TG.ACTusCT.TG.CssTA.. consensus/70% ........sGG...ATAC............CCAT....sCC........usAusA....TG.ACTusCT.TG.CssTA.. cov pid 35681 . 7 . . . . : . 35760 1 2019nCoV 100.0% 100.0% --gcactcaatttgctttt---gct----tg-------tcctgacgg----cgtaaaacacgtctatcagttacgtgcca 2 SARS 95.5% 77.9% --gcacacactttgctttt---gct----tg-------tgctgacggtactcg----acatacctatcagctgcgtgcaa 3 MERS 74.7% 47.2% atg-------tttg-ttttatggctcctatggccatcttcc--atgg----cg----------ctatca----------- consensus/100% ..G.......TTTG.TTTT...GCT....TG.......TsC..AsGG....CG..........CTATCA........... consensus/90% ..G.......TTTG.TTTT...GCT....TG.......TsC..AsGG....CG..........CTATCA........... consensus/80% ..G.......TTTG.TTTT...GCT....TG.......TsC..AsGG....CG..........CTATCA........... consensus/70% ..G.......TTTG.TTTT...GCT....TG.......TsC..AsGG....CG..........CTATCA........... cov pid 35761 . . . 8 . . . . 35840 1 2019nCoV 100.0% 100.0% gatcagttt--cacctaaactgttcatcagacaagaggaagttca---agaacttta-ctctccaatt--tttct--tat 2 SARS 95.5% 77.9% gatcagttt--caccaaaacttttcatcagacaagaggaggttcaacaagagctcta-ctcgccactt--tttct--cat 3 MERS 74.7% 47.2% -at--atttagcgcc------gtttatc---caa-------tt------ga--tctagcttcccagataatctctggcat consensus/100% .AT..uTTT..CuCC......sTTsATC...CAA.......TT......GA..TsTA.CTssCCAssT..TsTCT..sAT consensus/90% .AT..uTTT..CuCC......sTTsATC...CAA.......TT......GA..TsTA.CTssCCAssT..TsTCT..sAT consensus/80% .AT..uTTT..CuCC......sTTsATC...CAA.......TT......GA..TsTA.CTssCCAssT..TsTCT..sAT consensus/70% .AT..uTTT..CuCC......sTTsATC...CAA.......TT......GA..TsTA.CTssCCAssT..TsTCT..sAT cov pid 35841 : . . . . 9 . . 35920 1 2019nCoV 100.0% 100.0% tgttgcggcaatagtgtttataacactttgcttcacac-tcaaaagaaagacagaatgattgaactttca--ttaattga 2 SARS 95.5% 77.9% tgttgctgctctagtatttttaatactttgcttcac-cattaagagaaagacagaatgaatgagct--cactttaattga 3 MERS 74.7% 47.2% tgtagcagc-----tgttt----ca----gct-----------------------atga-tg----------tggatt-- consensus/100% TGTsGCsGC.....TuTTT....sA....GCT.......................ATGA.TG..........TsuATT.. consensus/90% TGTsGCsGC.....TuTTT....sA....GCT.......................ATGA.TG..........TsuATT.. consensus/80% TGTsGCsGC.....TuTTT....sA....GCT.......................ATGA.TG..........TsuATT.. consensus/70% TGTsGCsGC.....TuTTT....sA....GCT.......................ATGA.TG..........TsuATT.. cov pid 35921 . . : . . . . 0 36000 1 2019nCoV 100.0% 100.0% cttcta-tttgtgctttttag-----cc-----tttctg----ct--------------attccttgttttaattatg-- 2 SARS 95.5% 77.9% cttcta-tttgtgctttttag-----cc-----tttctg----ct--------------attccttgttttaataatg-- 3 MERS 74.7% 47.2% -tcctactttgtgc-----agagtatccggctgtttatgagaactggatcatggtggtcattc--------aatcctgag consensus/100% .TsCTA.TTTGTGC.....AG.....CC.....TTTsTG....CT..............ATTC........AATssTG.. consensus/90% .TsCTA.TTTGTGC.....AG.....CC.....TTTsTG....CT..............ATTC........AATssTG.. consensus/80% .TsCTA.TTTGTGC.....AG.....CC.....TTTsTG....CT..............ATTC........AATssTG.. consensus/70% .TsCTA.TTTGTGC.....AG.....CC.....TTTsTG....CT..............ATTC........AATssTG.. cov pid 36001 . . . . : . . . 36080 1 2019nCoV 100.0% 100.0% -cttattatcttttg---gttctcacttg-------aactgc-----------------aaga-tc-a------taatga 2 SARS 95.5% 77.9% -cttattatattttg---gttttcactcg-------aaatcc-----------------agga-tcta------gaa-ga 3 MERS 74.7% 47.2% actaattgccttttgaacgttc-catttggtggtacaactgtcgtacgtccactcgtagaggactctaccagtgtaa--- consensus/100% .CTsATTussTTTTG...GTTs.CAsTsG.......AAsTss.................AuGA.TC.A......sAA... consensus/90% .CTsATTussTTTTG...GTTs.CAsTsG.......AAsTss.................AuGA.TC.A......sAA... consensus/80% .CTsATTussTTTTG...GTTs.CAsTsG.......AAsTss.................AuGA.TC.A......sAA... consensus/70% .CTsATTussTTTTG...GTTs.CAsTsG.......AAsTss.................AuGA.TC.A......sAA... cov pid 36081 . 1 . . . . : . 36160 1 2019nCoV 100.0% 100.0% aac-----ttgtcac----g----cct--aaacga---acatgaaatttc---ttgttt-t--ct---------taggaa 2 SARS 95.5% 77.9% acc-----ttgt-accaaag----tct--aaacga---acatgaaacttctcattgttt-tgact---------t--gta 3 MERS 74.7% 47.2% --ctgctgttgtaaccaatggccacctcaaaatggctggcatg-catttc--ggtgcttgtgactacgacagact----- consensus/100% ..C.....TTGT.AC....G....sCT..AAAsGu...uCATG.sAsTTC...sTGsTT.T..CT.........T..... consensus/90% ..C.....TTGT.AC....G....sCT..AAAsGu...uCATG.sAsTTC...sTGsTT.T..CT.........T..... consensus/80% ..C.....TTGT.AC....G....sCT..AAAsGu...uCATG.sAsTTC...sTGsTT.T..CT.........T..... consensus/70% ..C.....TTGT.AC....G....sCT..AAAsGu...uCATG.sAsTTC...sTGsTT.T..CT.........T..... cov pid 36161 . . . 2 . . . . 36240 1 2019nCoV 100.0% 100.0% tcatcacaactgtagctgcat-ttcaccaagaatgtagtttacagt-catgtac-tc-aacatcaaccatatgtagttga 2 SARS 95.5% 77.9% tt-tctcta-tgcagttgcatatgcac------tgtag--tacagcgc-tgtgcatctaata--aacctcatgtgcttga 3 MERS 74.7% 47.2% ---tcctaa-tgaagt--------cacc------gtgg---------c------------ca--aacccaatgtgct--- consensus/100% ...TCsssA.TGsAGs........CAC.......GTuG.........C............sA..AACCssATGTusT... consensus/90% ...TCsssA.TGsAGs........CAC.......GTuG.........C............sA..AACCssATGTusT... consensus/80% ...TCsssA.TGsAGs........CAC.......GTuG.........C............sA..AACCssATGTusT... consensus/70% ...TCsssA.TGsAGs........CAC.......GTuG.........C............sA..AACCssATGTusT... cov pid 36241 : . . . . 3 . . 36320 1 2019nCoV 100.0% 100.0% tgacccgtgtcctattcacttctattct--aaatggtatattagagtaggagctagaaaat-----cagc------ac-- 2 SARS 95.5% 77.9% agatccttg------------------t--aa--ggtaca--acactaggggt-----aatacttatagc------actg 3 MERS 74.7% 47.2% -gat---tg---------ctt------taaaaatggtg----a----agcggc-----aa-------agctacggaac-- consensus/100% .GAs...TG..................T..AA..GGTu....A....AGsuGs.....AA.......AGC......AC.. consensus/90% .GAs...TG..................T..AA..GGTu....A....AGsuGs.....AA.......AGC......AC.. consensus/80% .GAs...TG..................T..AA..GGTu....A....AGsuGs.....AA.......AGC......AC.. consensus/70% .GAs...TG..................T..AA..GGTu....A....AGsuGs.....AA.......AGC......AC.. cov pid 36321 . . : . . . . 4 36400 1 2019nCoV 100.0% 100.0% ctt---taattgaattgtgcgt---ggatgaggctggttctaaatcacccatt---ca----------gtacatcgatat 2 SARS 95.5% 77.9% cttggct-------ttgtgc-tctagga-aaggtt---------ttacctttt---catagat----ggcacac---tat 3 MERS 74.7% 47.2% ------taatt---ccg-gc------------gttg------------ccatttaccatagatataaggca--------- consensus/100% ......T.......ssG.GC............GsT.............CssTT...CA..........GsA......... consensus/90% ......T.......ssG.GC............GsT.............CssTT...CA..........GsA......... consensus/80% ......T.......ssG.GC............GsT.............CssTT...CA..........GsA......... consensus/70% ......T.......ssG.GC............GsT.............CssTT...CA..........GsA......... cov pid 36401 . . . . : . . . 36480 1 2019nCoV 100.0% 100.0% cggt--aattatacagtttcctgtttacct--t-ttaca----attaattgccaggaacctaaattgggtagt---cttg 2 SARS 95.5% 77.9% -ggttcaaacatgca----------cacctaatgttact----atcaactgtcaagatcc--agctgg-tggtgcgctta 3 MERS 74.7% 47.2% -ggt--aat--tacagg----agtccgccta---ttacggcggat--attg-----------aa------------ctt- consensus/100% .GGT..AAs..TuCA..........suCCT....TTACs....AT..AsTG...........Au............CTT. consensus/90% .GGT..AAs..TuCA..........suCCT....TTACs....AT..AsTG...........Au............CTT. consensus/80% .GGT..AAs..TuCA..........suCCT....TTACs....AT..AsTG...........Au............CTT. consensus/70% .GGT..AAs..TuCA..........suCCT....TTACs....AT..AsTG...........Au............CTT. cov pid 36481 . 5 . . . . : . 36560 1 2019nCoV 100.0% 100.0% tagt---gcgttg-----ttcgttctatga----ag--------act--t---ttta----gagtatcatgacgttcgtg 2 SARS 95.5% 77.9% tagctaggtgttggtaccttc-----atga----aggtcaccaaactgctgcattta----gag-------acgtacttg 3 MERS 74.7% 47.2% -------gcattg----cttc-------gagcttagg--------ct----c-tttagtaagagtatcttaa-------- consensus/100% .......GsuTTG.....TTC.......GA....AG.........CT......TTTA....GAG.......A........ consensus/90% .......GsuTTG.....TTC.......GA....AG.........CT......TTTA....GAG.......A........ consensus/80% .......GsuTTG.....TTC.......GA....AG.........CT......TTTA....GAG.......A........ consensus/70% .......GsuTTG.....TTC.......GA....AG.........CT......TTTA....GAG.......A........ cov pid 36561 . . . 6 . . . . 36640 1 2019nCoV 100.0% 100.0% ttg-ttttagatttcatctaaacgaa---caa----actaaaatgtctgataatgg-accccaa---aatcagcgaaatg 2 SARS 95.5% 77.9% ttg-ttttaaa-------taaacgaa---caa----attaaaatgtctgataatgg-accccaatcaaaccaacgtagtg 3 MERS 74.7% 47.2% ttgatttta------------acgaatctcaatttcat-----tgtt-----atggcatccc--------ctgc----tg consensus/100% TTG.TTTTA............ACGAA...CAA....As.....TGTs.....ATGG.AsCCC........CsuC....TG consensus/90% TTG.TTTTA............ACGAA...CAA....As.....TGTs.....ATGG.AsCCC........CsuC....TG consensus/80% TTG.TTTTA............ACGAA...CAA....As.....TGTs.....ATGG.AsCCC........CsuC....TG consensus/70% TTG.TTTTA............ACGAA...CAA....As.....TGTs.....ATGG.AsCCC........CsuC....TG cov pid 36641 : . . . . 7 . . 36720 1 2019nCoV 100.0% 100.0% caccccg---cattacgtttggtggaccctcagattcaac--tggcagtaac-----caga-----------atggagaa 2 SARS 95.5% 77.9% ccccccg---cattacatttggtggacccacagattcaac--tgacaataac-----caga-----------atggagga 3 MERS 74.7% 47.2% cacctcgtgctgtttcctttg-----cc----gat--aacaatgata-taacaaatacaaacctatctcgaggtagagga consensus/100% CsCCsCG...suTTsCsTTTG.....CC....GAT..AAC..TGusA.TAAC.....CAuA...........uTuGAGuA consensus/90% CsCCsCG...suTTsCsTTTG.....CC....GAT..AAC..TGusA.TAAC.....CAuA...........uTuGAGuA consensus/80% CsCCsCG...suTTsCsTTTG.....CC....GAT..AAC..TGusA.TAAC.....CAuA...........uTuGAGuA consensus/70% CsCCsCG...suTTsCsTTTG.....CC....GAT..AAC..TGusA.TAAC.....CAuA...........uTuGAGuA cov pid 36721 . . : . . . . 8 36800 1 2019nCoV 100.0% 100.0% cgcagtggggcgcgatcaaaacaacgtcggccccaaggtttacccaataatactgcgtcttggttcaccgctctcactca 2 SARS 95.5% 77.9% cgcaatggggcaaggccaaaacagcgccgaccccaaggtttacccaataatactgcgtcttggttcacagctctcactca 3 MERS 74.7% 47.2% cgtaat---------ccaaaaccacg---------agctgcaccaaataacactgtctcttggtacactgggcttaccca consensus/100% CGsAuT.........sCAAAACsuCG.........AGsTssACCsAATAAsACTGssTCTTGGTsCACsGssCTsACsCA consensus/90% CGsAuT.........sCAAAACsuCG.........AGsTssACCsAATAAsACTGssTCTTGGTsCACsGssCTsACsCA consensus/80% CGsAuT.........sCAAAACsuCG.........AGsTssACCsAATAAsACTGssTCTTGGTsCACsGssCTsACsCA consensus/70% CGsAuT.........sCAAAACsuCG.........AGsTssACCsAATAAsACTGssTCTTGGTsCACsGssCTsACsCA cov pid 36801 . . . . : . . . 36880 1 2019nCoV 100.0% 100.0% acatggcaaggaag--------accttaaattcc--ctcgaggacaaggcgt---tccaattaacaccaatagcagtcca 2 SARS 95.5% 77.9% gcatggcaaggagg--------aacttagattcc--ctcgaggccagggcgt---tccaatcaacaccaatagtggtcca 3 MERS 74.7% 47.2% acacgg---gaaagtccctcttacctt----tccacct---gggcagggtgtacctc---ttaatgccaat-----tcta consensus/100% uCAsGG...GuAuG........AsCTT....TCC..CT...GGsCAuGGsGT...TC...TsAAsuCCAAT.....TCsA consensus/90% uCAsGG...GuAuG........AsCTT....TCC..CT...GGsCAuGGsGT...TC...TsAAsuCCAAT.....TCsA consensus/80% uCAsGG...GuAuG........AsCTT....TCC..CT...GGsCAuGGsGT...TC...TsAAsuCCAAT.....TCsA consensus/70% uCAsGG...GuAuG........AsCTT....TCC..CT...GGsCAuGGsGT...TC...TsAAsuCCAAT.....TCsA cov pid 36881 . 9 . . . . : . 36960 1 2019nCoV 100.0% 100.0% gatgacc--------aaat--tggctactaccgaagagctaccagacgaattcgtggtggtgacggtaaaat-------- 2 SARS 95.5% 77.9% gatgacc--------aaat--tggctactaccgaagagctacccgacgagttcgtggtggtgacggcaaaat-------- 3 MERS 74.7% 47.2% -----cccctgcgcaaaatgctgggtattggcggaga-----cag----------------gacagaaaaattaataccg consensus/100% .....CC........AAAT..TGGsTAsTusCGuAGA.....CsG................GACuGsAAAAT........ consensus/90% .....CC........AAAT..TGGsTAsTusCGuAGA.....CsG................GACuGsAAAAT........ consensus/80% .....CC........AAAT..TGGsTAsTusCGuAGA.....CsG................GACuGsAAAAT........ consensus/70% .....CC........AAAT..TGGsTAsTusCGuAGA.....CsG................GACuGsAAAAT........ cov pid 36961 . . . 0 . . . . 37040 1 2019nCoV 100.0% 100.0% gaaa--gatctcagt--------ccaagatggtatttctactac-ctaggaactgggccagaagctggacttcc-ctatg 2 SARS 95.5% 77.9% gaaa--gagctcagc--------cccagatggtacttctattac-ctaggaactggcccagaagcttcacttcc-ctacg 3 MERS 74.7% 47.2% ggaatggaattaagcaactggctcccaggtggtacttctactacact-ggaactggacccgaagcagcactcccattccg consensus/100% GuAA..GAssTsAGs........CCsAGuTGGTAsTTCTAsTAC.CT.GGAACTGGsCCsGAAGCsssACTsCC.sTssG consensus/90% GuAA..GAssTsAGs........CCsAGuTGGTAsTTCTAsTAC.CT.GGAACTGGsCCsGAAGCsssACTsCC.sTssG consensus/80% GuAA..GAssTsAGs........CCsAGuTGGTAsTTCTAsTAC.CT.GGAACTGGsCCsGAAGCsssACTsCC.sTssG consensus/70% GuAA..GAssTsAGs........CCsAGuTGGTAsTTCTAsTAC.CT.GGAACTGGsCCsGAAGCsssACTsCC.sTssG cov pid 37041 : . . . . 1 . . 37120 1 2019nCoV 100.0% 100.0% gtgctaacaaagacggcatcatatgggt---tgcaactgagggagcc-ttgaatacaccaaaagatcaca---ttggcac 2 SARS 95.5% 77.9% gcgctaacaaagaaggcatcgtatgggt---tgcaactgagggagcc-ttgaatacacccaaagaccaca---ttggcac 3 MERS 74.7% 47.2% g-gctgttaaggatggcatcgtttgggtccatg-aa--gatggcgccactg-atgctcct-----tca-acttttgggac consensus/100% G.GCTussAAuGAsGGCATCuTsTGGGT...TG.AA..GAsGGsGCC.sTG.ATuCsCCs.....sCA.A...TTGGsAC consensus/90% G.GCTussAAuGAsGGCATCuTsTGGGT...TG.AA..GAsGGsGCC.sTG.ATuCsCCs.....sCA.A...TTGGsAC consensus/80% G.GCTussAAuGAsGGCATCuTsTGGGT...TG.AA..GAsGGsGCC.sTG.ATuCsCCs.....sCA.A...TTGGsAC consensus/70% G.GCTussAAuGAsGGCATCuTsTGGGT...TG.AA..GAsGGsGCC.sTG.ATuCsCCs.....sCA.A...TTGGsAC cov pid 37121 . . : . . . . 2 37200 1 2019nCoV 100.0% 100.0% ccgcaatcctgctaacaatg---ctgcaat------------cgtgc----tac--aacttcctcaaggaacaacattgc 2 SARS 95.5% 77.9% ccgcaatcctaataacaatg---ctgccac------------cgtgc----tac--aacttcctcaaggaacaacattgc 3 MERS 74.7% 47.2% gcggaaccc---taacaatgattcagctattgttacacaattcgcgcccggtactaagcttcct---------------- consensus/100% sCGsAAsCC...TAACAATG...CsGCsAs............CGsGC....TAC..AuCTTCCT................ consensus/90% sCGsAAsCC...TAACAATG...CsGCsAs............CGsGC....TAC..AuCTTCCT................ consensus/80% sCGsAAsCC...TAACAATG...CsGCsAs............CGsGC....TAC..AuCTTCCT................ consensus/70% sCGsAAsCC...TAACAATG...CsGCsAs............CGsGC....TAC..AuCTTCCT................ cov pid 37201 . . . . : . . . 37280 1 2019nCoV 100.0% 100.0% caaaaggcttctacgcagaagggagcagaggcggcagtcaagcctcttc-------tc--------------gttcctc- 2 SARS 95.5% 77.9% caaaaggcttctacgcagagggaagcagaggcggcagtcaagcctcttc-------tc--------------gctcctc- 3 MERS 74.7% 47.2% --aaaaacttccacattgaggggactggaggcaatagtcaatcatcttcaagagcctctagcttaagcagaaactcttcc consensus/100% ..AAAuuCTTCsACussGAuGGuAssuGAGGCuusAGTCAAsCsTCTTC.......TC..............usTCsTC. consensus/90% ..AAAuuCTTCsACussGAuGGuAssuGAGGCuusAGTCAAsCsTCTTC.......TC..............usTCsTC. consensus/80% ..AAAuuCTTCsACussGAuGGuAssuGAGGCuusAGTCAAsCsTCTTC.......TC..............usTCsTC. consensus/70% ..AAAuuCTTCsACussGAuGGuAssuGAGGCuusAGTCAAsCsTCTTC.......TC..............usTCsTC. cov pid 37281 . 3 . . . . : . 37360 1 2019nCoV 100.0% 100.0% --atcacgtag-tcgcaacagttcaaga------aattcaactccaggcagcagtaggggaacttctcctg------cta 2 SARS 95.5% 77.9% --atcacgtag-tcgcggtaattcaaga------aattcaactcctggcagcagtaggggaaattctcctg------ctc 3 MERS 74.7% 47.2% agatc---tagttcacaa-ggttcaagatcaggaaactctaccc---gcggc---------acttctccaggtccatctg consensus/100% ..ATC...TAG.TCuCuu.uuTTCAAGA......AAsTCsACsC...GCuGC.........AsTTCTCCsG......CTs consensus/90% ..ATC...TAG.TCuCuu.uuTTCAAGA......AAsTCsACsC...GCuGC.........AsTTCTCCsG......CTs consensus/80% ..ATC...TAG.TCuCuu.uuTTCAAGA......AAsTCsACsC...GCuGC.........AsTTCTCCsG......CTs consensus/70% ..ATC...TAG.TCuCuu.uuTTCAAGA......AAsTCsACsC...GCuGC.........AsTTCTCCsG......CTs cov pid 37361 . . . 4 . . . . 37440 1 2019nCoV 100.0% 100.0% gaat-ggctggcaat-ggcggtgatgctgctcttgctttgctgctgcttgacagattgaaccagc--ttgagagcaaaat 2 SARS 95.5% 77.9% gaat-ggctagcgga-ggtggtgaaactgccctcgcgctattgctgctagacagattgaaccagc--ttgagagcaaagt 3 MERS 74.7% 47.2% gaatcgg--agcagtaggaggtgat-ctact-ttaccttgat-cttctgaacagact--acaagcccttgag-------- consensus/100% GAAT.GG..uGCuus.GGsGGTGAs.CTuCs.TsuCssTusT.CTsCTsuACAGAsT..ACsAGC..TTGAG........ consensus/90% GAAT.GG..uGCuus.GGsGGTGAs.CTuCs.TsuCssTusT.CTsCTsuACAGAsT..ACsAGC..TTGAG........ consensus/80% GAAT.GG..uGCuus.GGsGGTGAs.CTuCs.TsuCssTusT.CTsCTsuACAGAsT..ACsAGC..TTGAG........ consensus/70% GAAT.GG..uGCuus.GGsGGTGAs.CTuCs.TsuCssTusT.CTsCTsuACAGAsT..ACsAGC..TTGAG........ cov pid 37441 : . . . . 5 . . 37520 1 2019nCoV 100.0% 100.0% gtctggtaaaggccaacaacaa---caaggccaa-----actgtcactaagaaa--t-ctgctgctgaggcttctaagaa 2 SARS 95.5% 77.9% ttctggtaaaggccaacaacaa---caaggccaa-----actgtcactaagaaa--t-ctgctgctgaggcatctaaaaa 3 MERS 74.7% 47.2% -tctggcaaag--taa-agcaatcgca--gccaaaagtaa---tcactaagaaagatgctgctgctg------ctaaaaa consensus/100% .TCTGGsAAAG..sAA.AuCAA...CA..GCCAA.....A...TCACTAAGAAA..T.CTGCTGCTG......CTAAuAA consensus/90% .TCTGGsAAAG..sAA.AuCAA...CA..GCCAA.....A...TCACTAAGAAA..T.CTGCTGCTG......CTAAuAA consensus/80% .TCTGGsAAAG..sAA.AuCAA...CA..GCCAA.....A...TCACTAAGAAA..T.CTGCTGCTG......CTAAuAA consensus/70% .TCTGGsAAAG..sAA.AuCAA...CA..GCCAA.....A...TCACTAAGAAA..T.CTGCTGCTG......CTAAuAA cov pid 37521 . . : . . . . 6 37600 1 2019nCoV 100.0% 100.0% ------gcctcggcaaaaacgtactgccactaaag----ca-taca--atgtaacacaagctttcggcagac---gtggt 2 SARS 95.5% 77.9% ------gcctcgccaaaaacgtactgccac-aaaa----cagtaca--acgtcactcaagcatttgggagac---gtggt 3 MERS 74.7% 47.2% taagatgc---gccacaagcgcacttccaccaaaagtttca--acatggtg-----caagcttttggt---cttcgcgga consensus/100% ......GC...GsCAsAAuCGsACTsCCAC.AAAu....CA..ACA..usG.....CAAGCsTTsGGs...C...GsGGs consensus/90% ......GC...GsCAsAAuCGsACTsCCAC.AAAu....CA..ACA..usG.....CAAGCsTTsGGs...C...GsGGs consensus/80% ......GC...GsCAsAAuCGsACTsCCAC.AAAu....CA..ACA..usG.....CAAGCsTTsGGs...C...GsGGs consensus/70% ......GC...GsCAsAAuCGsACTsCCAC.AAAu....CA..ACA..usG.....CAAGCsTTsGGs...C...GsGGs cov pid 37601 . . . . : . . . 37680 1 2019nCoV 100.0% 100.0% ccagaacaaacc--caaggaaattttggggaccaggaact--aatcagacaa----ggaactgattacaaacattggccg 2 SARS 95.5% 77.9% ccagaacaaacc--caaggaaatttcggggaccaagacct--aatcagacaa----ggaactgattacaaacattggccg 3 MERS 74.7% 47.2% ccagga--gacctccagggaaactttggtgatc------ttcaattgaataaactcggcactgaggacccacgttggccc consensus/100% CCAGuA..uACC..CAuGGAAAsTTsGGsGAsC......T..AATsuuAsAA....GGsACTGAssACssACuTTGGCCs consensus/90% CCAGuA..uACC..CAuGGAAAsTTsGGsGAsC......T..AATsuuAsAA....GGsACTGAssACssACuTTGGCCs consensus/80% CCAGuA..uACC..CAuGGAAAsTTsGGsGAsC......T..AATsuuAsAA....GGsACTGAssACssACuTTGGCCs consensus/70% CCAGuA..uACC..CAuGGAAAsTTsGGsGAsC......T..AATsuuAsAA....GGsACTGAssACssACuTTGGCCs cov pid 37681 . 7 . . . . : . 37760 1 2019nCoV 100.0% 100.0% caaattgcacaatttgcccc------cagcgcttcagcgttctt-cgga-atgtcgcg-------------cattgg--- 2 SARS 95.5% 77.9% caaattgcacaatttgctcc------aagtgcctctgcattctt-tgga-atgtcacg-------------cattgg--- 3 MERS 74.7% 47.2% caaattgctgagcttgctcctacagccagtgctt--------ttatgggtatgtcgcaatttaaacttacccatcagaac consensus/100% CAAATTGCssAusTTGCsCC......sAGsGCsT........TT.sGGu.ATGTCuCu.............CATsuG... consensus/90% CAAATTGCssAusTTGCsCC......sAGsGCsT........TT.sGGu.ATGTCuCu.............CATsuG... consensus/80% CAAATTGCssAusTTGCsCC......sAGsGCsT........TT.sGGu.ATGTCuCu.............CATsuG... consensus/70% CAAATTGCssAusTTGCsCC......sAGsGCsT........TT.sGGu.ATGTCuCu.............CATsuG... cov pid 37761 . . . 8 . . . . 37840 1 2019nCoV 100.0% 100.0% ---------catggaagtcaca-------------ccttcgggaacgtggttgacctacaca--ggtgccatcaaattgg 2 SARS 95.5% 77.9% ---------catggaagtcaca-------------ccttcgggaacatggctgacttat-ca-tggagccattaaattgg 3 MERS 74.7% 47.2% aatgatgatcatgg------caaccctgtgtacttccttcgg--------------ta--cagtggagccattaaact-- consensus/100% .........CATGG......CA.............CCTTCGG..............TA..CA..GGsGCCATsAAAsT.. consensus/90% .........CATGG......CA.............CCTTCGG..............TA..CA..GGsGCCATsAAAsT.. consensus/80% .........CATGG......CA.............CCTTCGG..............TA..CA..GGsGCCATsAAAsT.. consensus/70% .........CATGG......CA.............CCTTCGG..............TA..CA..GGsGCCATsAAAsT.. cov pid 37841 : . . . . 9 . . 37920 1 2019nCoV 100.0% 100.0% atgac--aaag-atcc-----a-aatttcaaagatcaa-gt--------cattttgctgaataagcatattgacgcatac 2 SARS 95.5% 77.9% atgac--aaag-atcc-----acaat-tcaaaga-caacgt--------catactgctgaacaagcacattgacgcatac 3 MERS 74.7% 47.2% -tgacccaaagaatcccaactacaat----------aa-gtggttggagc-ttct--tgagcaaa-atattgatgcctac consensus/100% .TGAC..AAAG.ATCC.....A.AAT..........AA.GT........C.TssT..TGAusAAu.AsATTGAsGCsTAC consensus/90% .TGAC..AAAG.ATCC.....A.AAT..........AA.GT........C.TssT..TGAusAAu.AsATTGAsGCsTAC consensus/80% .TGAC..AAAG.ATCC.....A.AAT..........AA.GT........C.TssT..TGAusAAu.AsATTGAsGCsTAC consensus/70% .TGAC..AAAG.ATCC.....A.AAT..........AA.GT........C.TssT..TGAusAAu.AsATTGAsGCsTAC cov pid 37921 . . : . . . . 0 38000 1 2019nCoV 100.0% 100.0% aaaacattcccaccaacagagcctaaaaagg-------acaaaa---------agaagaa------ggctga-----tga 2 SARS 95.5% 77.9% aaaacattcccaccaacagagcctaaaaagg-------acaaaa---------agaaaaa------gactga-----tga 3 MERS 74.7% 47.2% aaaaccttccc------------taagaaggaaaagaaacaaaaggcaccaaaagaagaatcaacagaccaaatgtctga consensus/100% AAAACsTTCCC............TAAuAAGG.......ACAAAA.........AGAAuAA......GuCsuA.....TGA consensus/90% AAAACsTTCCC............TAAuAAGG.......ACAAAA.........AGAAuAA......GuCsuA.....TGA consensus/80% AAAACsTTCCC............TAAuAAGG.......ACAAAA.........AGAAuAA......GuCsuA.....TGA consensus/70% AAAACsTTCCC............TAAuAAGG.......ACAAAA.........AGAAuAA......GuCsuA.....TGA cov pid 38001 . . . . : . . . 38080 1 2019nCoV 100.0% 100.0% aactcaagcctt-accgcagagacagaagaaacagcaaactgtg------------actc------------ttcttcc- 2 SARS 95.5% 77.9% agctc-agcctttgccgcagagacaaaagaagcagcccactgtg------------actc------------ttcttcc- 3 MERS 74.7% 47.2% acctc------------------ca-aaggagcagcg---tgtgcaaggtagcatcactcagcgcactcgcacccgtcca consensus/100% AsCTC..................CA.AAGuAuCAGCs...TGTG............ACTC............ssCsTCC. consensus/90% AsCTC..................CA.AAGuAuCAGCs...TGTG............ACTC............ssCsTCC. consensus/80% AsCTC..................CA.AAGuAuCAGCs...TGTG............ACTC............ssCsTCC. consensus/70% AsCTC..................CA.AAGuAuCAGCs...TGTG............ACTC............ssCsTCC. cov pid 38081 . 1 . . . . : . 38160 1 2019nCoV 100.0% 100.0% --tg--ctgcagatttgg----atgatt-----tctccaaacaattgcaacaa-tcca-tgagcag------tgctgact 2 SARS 95.5% 77.9% --tg--cggctgacatgg----atgatt-----tctccagacaacttcaa-aattcca-tgagtggagcttctgctgatt 3 MERS 74.7% 47.2% agtgttcagcc----tggtccaatgattgatgtt-----------------aa---cactgattag------tg-tcact consensus/100% ..TG..CsGCs....TGG....ATGATT.....T.................AA...CA.TGAssuG......TG.TsAsT consensus/90% ..TG..CsGCs....TGG....ATGATT.....T.................AA...CA.TGAssuG......TG.TsAsT consensus/80% ..TG..CsGCs....TGG....ATGATT.....T.................AA...CA.TGAssuG......TG.TsAsT consensus/70% ..TG..CsGCs....TGG....ATGATT.....T.................AA...CA.TGAssuG......TG.TsAsT cov pid 38161 . . . 2 . . . . 38240 1 2019nCoV 100.0% 100.0% caactcaggcctaaac--tcatgca-gaccacacaaggcagatgggctatataaacgttt------------------tc 2 SARS 95.5% 77.9% caactcaggcataaacactcatg-atgaccacacaaggcagatgggctatgtaaacgttt------------------tc 3 MERS 74.7% 47.2% caa---ag---taa-----ca---a-gatcgc----ggca--------at-----cgtttgtgtttggcaaccccatctc consensus/100% CAA...AG...TAA.....CA...A.GAsCuC....GGCA........AT.....CGTTT..................TC consensus/90% CAA...AG...TAA.....CA...A.GAsCuC....GGCA........AT.....CGTTT..................TC consensus/80% CAA...AG...TAA.....CA...A.GAsCuC....GGCA........AT.....CGTTT..................TC consensus/70% CAA...AG...TAA.....CA...A.GAsCuC....GGCA........AT.....CGTTT..................TC cov pid 38241 : . . . . 3 . . 38320 1 2019nCoV 100.0% 100.0% gcttttccgtttacgatatatagtctactcttgtgcagaatgaattc---tcgtaactacatagcacaagtagatgtagt 2 SARS 95.5% 77.9% gcaattccgtttacgatacatagtctactcttgtgcagaatgaattc---tcgtaactaaacagcacaagtaggtttagt 3 MERS 74.7% 47.2% accat--cgctt----------gtccactcttgcacagaatggaatcatgttgtaatta--cagtgcaa-taag-gtaat consensus/100% uCssT..CGsTT..........GTCsACTCTTGsuCAGAATGuAsTC...TsGTAAsTA..sAGsuCAA.TAuu.sTAuT consensus/90% uCssT..CGsTT..........GTCsACTCTTGsuCAGAATGuAsTC...TsGTAAsTA..sAGsuCAA.TAuu.sTAuT consensus/80% uCssT..CGsTT..........GTCsACTCTTGsuCAGAATGuAsTC...TsGTAAsTA..sAGsuCAA.TAuu.sTAuT consensus/70% uCssT..CGsTT..........GTCsACTCTTGsuCAGAATGuAsTC...TsGTAAsTA..sAGsuCAA.TAuu.sTAuT cov pid 38321 . . : . . . . 4 38400 1 2019nCoV 100.0% 100.0% t--aac---tttaatctcacatagcaat-cttta---atcagtgtgtaacat-tagggaggacttg--aaaga--gccac 2 SARS 95.5% 77.9% t--aac---tttaatctcacatagcaat-cttta---atcaatgtgtaacat-tagggaggacttg--aaaga--gccac 3 MERS 74.7% 47.2% tataacccatttaattg---atagctatgctttattaa--agtgtgtagc-tgtagagagaa--tgttaaagactgtcac consensus/100% T..AAC...TTTAATss...ATAGCsAT.CTTTA...A..AuTGTGTAuC.T.TAGuGAGuA..TG..AAAGA..GsCAC consensus/90% T..AAC...TTTAATss...ATAGCsAT.CTTTA...A..AuTGTGTAuC.T.TAGuGAGuA..TG..AAAGA..GsCAC consensus/80% T..AAC...TTTAATss...ATAGCsAT.CTTTA...A..AuTGTGTAuC.T.TAGuGAGuA..TG..AAAGA..GsCAC consensus/70% T..AAC...TTTAATss...ATAGCsAT.CTTTA...A..AuTGTGTAuC.T.TAGuGAGuA..TG..AAAGA..GsCAC cov pid 38401 . . . . : . . . 38480 1 2019nCoV 100.0% 100.0% cacattttcaccgaggccacgcggagtacgatcgagtgtacagtgaacaatgct----agggagagctgcctata-tg-g 2 SARS 95.5% 77.9% cacattttcatcgaggccacgcggagtacgatcgagggtacagtgaataatgct----agggagagctgcctata-tg-g 3 MERS 74.7% 47.2% c------tc----------tgc---------ttgattgca-agtgaacagtgccccccgggaagagct--ctacagtgtg consensus/100% C......TC..........sGC.........TsGAssGsA.AGTGAAsAuTGCs....uGGuAGAGCT..CTAsA.TG.G consensus/90% C......TC..........sGC.........TsGAssGsA.AGTGAAsAuTGCs....uGGuAGAGCT..CTAsA.TG.G consensus/80% C......TC..........sGC.........TsGAssGsA.AGTGAAsAuTGCs....uGGuAGAGCT..CTAsA.TG.G consensus/70% C......TC..........sGC.........TsGAssGsA.AGTGAAsAuTGCs....uGGuAGAGCT..CTAsA.TG.G cov pid 38481 . 5 . . . . : . 38560 1 2019nCoV 100.0% 100.0% aagagccctaatgtg--taaaattaattttagtagtgctatccccatgt-------gatt---ttaatagcttcttagga 2 SARS 95.5% 77.9% aagagccctaatgtg--taaaattaattttagtagtgctatccccatgt-------gatt---ttaatagcttcttagga 3 MERS 74.7% 47.2% a--------aatgtaaataaaa--------aatag--ctat-----tattcaattagattaggctaa-------ttag-- consensus/100% A........AATGTu..TAAAA........AuTAG..CTAT.....TuT.......GATT...sTAA.......TTAG.. consensus/90% A........AATGTu..TAAAA........AuTAG..CTAT.....TuT.......GATT...sTAA.......TTAG.. consensus/80% A........AATGTu..TAAAA........AuTAG..CTAT.....TuT.......GATT...sTAA.......TTAG.. consensus/70% A........AATGTu..TAAAA........AuTAG..CTAT.....TuT.......GATT...sTAA.......TTAG.. cov pid 38561 . . . 6 ] 38604 1 2019nCoV 100.0% 100.0% gaatga----caaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa 2 SARS 95.5% 77.9% gaatga----caaaaaaaaaaaaaaaaaaaaaaaa--------- 3 MERS 74.7% 47.2% --atgatttgcaaaaaaaaaaaa--------------------- consensus/100% ..ATGA....CAAAAAAAAAAAA..................... consensus/90% ..ATGA....CAAAAAAAAAAAA..................... consensus/80% ..ATGA....CAAAAAAAAAAAA..................... consensus/70% ..ATGA....CAAAAAAAAAAAA.....................

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